| Label | Region | Length (bp) | Pi | Alignment reliability | MarkerSeek score | Primer available | Action |
|---|---|---|---|---|---|---|---|
| trnK-UUU-rbcL | Genome | 1079 | 0.0102 | 0.97 | 51.3 | yes | View details |
| trnF-GAA-trnL-UAA | Genome | 368 | 0.0125 | 1.00 | 53.1 | yes | View details |
| trnL-UAA-trnT-UGU | Genome | 1576 | 0.0148 | 0.93 | 77.2 | yes | View details |
| petN-trnC-GCA | Genome | 1069 | 0.0102 | 1.00 | 62.4 | yes | View details |
| trnQ-UUG-accD | Genome | 1180 | 0.0134 | 0.99 | 60.0 | yes | View details |
| petA-psbJ | Genome | 1103 | 0.0093 | 0.97 | 54.9 | yes | View details |
| trnR-ACG-trnN-GUU | Genome | 541 | 0.0199 | 1.00 | 63.7 | yes | View details |
| ycf1-rps15 | Genome | 572 | 0.0132 | 0.98 | 68.9 | yes | View details |
| ndhF-trnH-GUG | Genome | 224 | 0.0076 | 0.99 | 66.5 | no | View details |
| atpI-atpH | Genome | 1000 | 0.0081 | 1.00 | 65.5 | yes | View details |
| trnV-UAC-ndhC | Genome | 437 | 0.0169 | 0.97 | 63.9 | yes | View details |
| ycf3-psaA | Genome | 892 | 0.0073 | 1.00 | 63.4 | yes | View details |
| rps12-trnV-GAC | Genome | 1660 | 0.0069 | 1.00 | 63.2 | yes | View details |
| psbD-trnT-GGU | Genome | 1483 | 0.0066 | 0.99 | 62.0 | yes | View details |
| psbM-petN | Genome | 529 | 0.0093 | 1.00 | 60.9 | yes | View details |
| rps8-rpl14 | Genome | 387 | 0.0118 | 0.99 | 60.0 | yes | View details |
| Candidate markers include all hotspot labels marked in the diversity plot, listed in genomic order, plus the top 10 remaining regions by MarkerSeek score. Primer design is attempted for every listed region. Primer available: yes means at least one valid primer pair was found; no means no valid pair passed screening; NA means primer design was skipped. | |||||||
Species
26
Genome length
127–128 kb
Candidate markers
226
Primer pairs
80
Genome-wide nucleotide diversity
Candidate markers
7 hotspot labels from the diversity plot in genomic order, plus the top 9 remaining regions by MarkerSeek score (out of 226 candidates).
Primer pairs
Showing the top 30 of 80 primer pairs (ranked by primer score).
| Primer ID | Label | Forward | Reverse | Amplicon (bp) | Cross-species rate | Score |
|---|---|---|---|---|---|---|
| trnK-UUU-rbcL_p1 | trnK-UUU-rbcL | TGGAGTCGCACTTAAAAGCC |
TTTGAATTCCCGGCAATGGA |
1131–1220 | 1.000 | 82.5 |
| trnK-UUU-rbcL_p2 | trnK-UUU-rbcL | AACCCTACCGATGGTATGGA |
TTTGAATTCCCGGCAATGGA |
1184–1273 | 1.000 | 82.4 |
| trnK-UUU-rbcL_p3 | trnK-UUU-rbcL | AGTCGTGGTCTTACAAACCC |
TTTGAATTCCCGGCAATGGA |
1199–1288 | 1.000 | 81.9 |
| trnK-UUU-rbcL_p4 | trnK-UUU-rbcL | GTCGTGGTCTTACAAACCCT |
TTTGAATTCCCGGCAATGGA |
1198–1287 | 1.000 | 81.9 |
| trnK-UUU-rbcL_p5 | trnK-UUU-rbcL | TGGAGTCGCACTTAAAAGCC |
TTGAATTCCCGGCAATGGAT |
1130–1219 | 1.000 | 81.8 |
| trnV-UAC-ndhC_p1 | trnV-UAC-ndhC | AGAAGGTCTACGGTTCGAGT |
TTCTGGCCCTTTGCTAATCG |
587–653 | 0.962 | 81.7 |
| trnV-UAC-ndhC_p2 | trnV-UAC-ndhC | GAAGGTCTACGGTTCGAGTC |
TTCTGGCCCTTTGCTAATCG |
586–652 | 0.962 | 79.0 |
| trnV-UAC-ndhC_p3 | trnV-UAC-ndhC | GTTCGAGTCCGTATAGCCCT |
TTCTGGCCCTTTGCTAATCG |
575–641 | 0.962 | 78.0 |
| trnV-UAC-ndhC_p4 | trnV-UAC-ndhC | AAGGTCTACGGTTCGAGTCC |
TTCTGGCCCTTTGCTAATCG |
585–651 | 0.962 | 76.7 |
| trnV-UAC-ndhC_p5 | trnV-UAC-ndhC | GAGAAGGTCTACGGTTCGAG |
TTCTGGCCCTTTGCTAATCG |
588–654 | 0.962 | 76.7 |
| trnF-GAA-trnL-UAA_p1 | trnF-GAA-trnL-UAA | TTTGAACTGGTGACACGAGG |
AATCGTGAGGGTTCAAGTCC |
447–463 | 1.000 | 82.8 |
| trnF-GAA-trnL-UAA_p2 | trnF-GAA-trnL-UAA | AAATGAATCATGTGCCGGGA |
AATCGTGAGGGTTCAAGTCC |
473–489 | 1.000 | 81.7 |
| trnF-GAA-trnL-UAA_p3 | trnF-GAA-trnL-UAA | AATGAATCATGTGCCGGGAA |
AATCGTGAGGGTTCAAGTCC |
472–488 | 1.000 | 81.7 |
| trnF-GAA-trnL-UAA_p4 | trnF-GAA-trnL-UAA | CAAATGAATCATGTGCCGGG |
AATCGTGAGGGTTCAAGTCC |
474–490 | 1.000 | 81.1 |
| trnF-GAA-trnL-UAA_p5 | trnF-GAA-trnL-UAA | TACCAACTGAGCTATCCCGA |
AATCGTGAGGGTTCAAGTCC |
409–425 | 1.000 | 80.1 |
| trnL-UAA-trnT-UGU_p1 | trnL-UAA-trnT-UGU | ACCAATTTCGCCATATCCCC |
GCGATGCTCTAACCTCTGAG |
1111–1766 | 1.000 | 89.2 |
| trnL-UAA-trnT-UGU_p2 | trnL-UAA-trnT-UGU | ACCAATTTCGCCATATCCCC |
GAGTCGAACCGATGACCATC |
1142–1797 | 1.000 | 88.9 |
| trnL-UAA-trnT-UGU_p3 | trnL-UAA-trnT-UGU | TAGCGTCTACCAATTTCGCC |
GCGATGCTCTAACCTCTGAG |
1119–1774 | 1.000 | 88.6 |
| trnL-UAA-trnT-UGU_p4 | trnL-UAA-trnT-UGU | TAGCGTCTACCAATTTCGCC |
GAGTCGAACCGATGACCATC |
1150–1805 | 1.000 | 88.3 |
| trnL-UAA-trnT-UGU_p5 | trnL-UAA-trnT-UGU | AGTCCGTAGCGTCTACCAAT |
GCGATGCTCTAACCTCTGAG |
1125–1780 | 1.000 | 87.3 |
| ycf3-psaA_p1 | ycf3-psaA | AGCCCTTACCCCTGGTAATT |
TGCCCATTCCTCGAAAGAAG |
985–1083 | 1.000 | 85.7 |
| ycf3-psaA_p2 | ycf3-psaA | AGCCCTTACCCCTGGTAATT |
GCCCATTCCTCGAAAGAAGT |
984–1082 | 1.000 | 85.7 |
| ycf3-psaA_p3 | ycf3-psaA | AGCTATAGCCCTTACCCCTG |
TGCCCATTCCTCGAAAGAAG |
991–1089 | 1.000 | 85.5 |
| ycf3-psaA_p4 | ycf3-psaA | AGCTATAGCCCTTACCCCTG |
GCCCATTCCTCGAAAGAAGT |
990–1088 | 1.000 | 85.5 |
| ycf3-psaA_p5 | ycf3-psaA | TTGGTTGAAGATCACAGGGC |
TGCCCATTCCTCGAAAGAAG |
949–1047 | 1.000 | 85.1 |
| psbD-trnT-GGU_p1 | psbD-trnT-GGU | GAGCAATAGACCGGACCAAC |
CAGTGTGGTAGAGTAACGCC |
1628–1703 | 1.000 | 83.8 |
| psbD-trnT-GGU_p2 | psbD-trnT-GGU | GAGCAATAGACCGGACCAAC |
GTGGTAGAGTAACGCCATGG |
1624–1699 | 1.000 | 83.3 |
| psbD-trnT-GGU_p3 | psbD-trnT-GGU | AAGAGCAATAGACCGGACCA |
CAGTGTGGTAGAGTAACGCC |
1630–1705 | 1.000 | 83.1 |
| psbD-trnT-GGU_p4 | psbD-trnT-GGU | AGAGCAATAGACCGGACCAA |
CAGTGTGGTAGAGTAACGCC |
1629–1704 | 1.000 | 83.1 |
| psbD-trnT-GGU_p5 | psbD-trnT-GGU | AGAGCAATAGACCGGACCAA |
GTGGTAGAGTAACGCCATGG |
1625–1700 | 1.000 | 82.7 |
Result downloads
Reference species (26)
One GenBank record per species. Use the NCBI button to open the Nucleotide entry for the listed accession.
| Species | Accession | Length (bp) | Link |
|---|---|---|---|
| Glycyrrhiza acanthocarpa | MT120750.1 | 127694 | View on NCBI ↗ |
| Glycyrrhiza alaschanica | NC_065140.1 | 127990 | View on NCBI ↗ |
| Glycyrrhiza aspera | NC_048509.1 | 127831 | View on NCBI ↗ |
| Glycyrrhiza astragalina | MT120755.1 | 126903 | View on NCBI ↗ |
| Glycyrrhiza echinata | NC_065141.1 | 127993 | View on NCBI ↗ |
| Glycyrrhiza eurycarpa x Glycyrrhiza uralensis | PV158117.1 | 127888 | View on NCBI ↗ |
| Glycyrrhiza foetida | MT120762.1 | 127819 | View on NCBI ↗ |
| Glycyrrhiza glabra | NC_024038.1 | 127943 | View on NCBI ↗ |
| Glycyrrhiza glabra x Glycyrrhiza uralensis | NC_046414.1 | 127939 | View on NCBI ↗ |
| Glycyrrhiza glandulifera | MT120772.1 | 127939 | View on NCBI ↗ |
| Glycyrrhiza gobica | NC_065142.1 | 127970 | View on NCBI ↗ |
| Glycyrrhiza gontscharovii | NC_065143.1 | 127616 | View on NCBI ↗ |
| Glycyrrhiza iconica | MT120774.1 | 127906 | View on NCBI ↗ |
| Glycyrrhiza inflata | NC_042146.1 | 127927 | View on NCBI ↗ |
| Glycyrrhiza inflata x Glycyrrhiza uralensis | PV158121.1 | 127867 | View on NCBI ↗ |
| Glycyrrhiza korshinskyi | NC_065145.1 | 127894 | View on NCBI ↗ |
| Glycyrrhiza laxissima | MT120777.1 | 127885 | View on NCBI ↗ |
| Glycyrrhiza lepidota | NC_034229.1 | 127939 | View on NCBI ↗ |
| Glycyrrhiza macedonica | MT120782.1 | 127894 | View on NCBI ↗ |
| Glycyrrhiza pallidiflora | NC_062051.1 | 127459 | View on NCBI ↗ |
| Glycyrrhiza squamulosa | NC_072665.1 | 127779 | View on NCBI ↗ |
| Glycyrrhiza triphylla | MT120803.1 | 127767 | View on NCBI ↗ |
| Glycyrrhiza uralensis | NC_047343.1 | 127887 | View on NCBI ↗ |
| Glycyrrhiza uralensis x Glycyrrhiza eurycarpa | PV158116.1 | 127891 | View on NCBI ↗ |
| Glycyrrhiza uralensis x Glycyrrhiza inflata | PV158120.1 | 127796 | View on NCBI ↗ |
| Glycyrrhiza zaissanica | NC_065144.1 | 127984 | View on NCBI ↗ |