Pi
0.02
MarkerSeek score
60.10
Primer available
yes
Label
trnL-UAA
Feature Metadata
Pi Curve
Haplotype Network
Species Separation
Primer Ranking
| Primer ID | fwd_seq | rev_seq | fwd_gc | rev_gc | fwd_tm | rev_tm | amplicon_size | cross_species_success_rate | primer_score |
|---|---|---|---|---|---|---|---|---|---|
| trnL-UAA_p1 | GGGGAACAGCATTGAGATCC | GGGTAGGAGAAATGGTTAGGG | 55.0 | 52.4 | 58.3 | 57.1 | 688-690 bp | 1.0 | 62.8 |
| trnL-UAA_p2 | GGGGAACAGCATTGAGATCC | AGGAGAAATGGTTAGGGAGTCA | 55.0 | 45.5 | 58.3 | 58.2 | 684-686 bp | 1.0 | 60.1 |
| trnL-UAA_p3 | AGGGGAACAGCATTGAGATC | GGGTAGGAGAAATGGTTAGGG | 50.0 | 52.4 | 57.3 | 57.1 | 689-691 bp | 1.0 | 59.6 |
| trnL-UAA_p4 | GGGAACAGCATTGAGATCCT | GGGTAGGAGAAATGGTTAGGG | 50.0 | 52.4 | 57.3 | 57.1 | 687-689 bp | 1.0 | 59.6 |
| trnL-UAA_p5 | GGGGAACAGCATTGAGATCC | GGAGAAATGGTTAGGGAGTCA | 55.0 | 47.6 | 58.3 | 56.7 | 683-685 bp | 1.0 | 59.5 |
| trnL-UAA_p1 | TCAATACCGGCAACAATGAA | GGGTAGGAGAAATGGTTAGGG | 40.0 | 52.4 | 55.6 | 57.1 | 125 bp | 1.0 | 46.9 |
| trnL-UAA_p2 | TCAATACCGGCAACAATGAAA | GGGTAGGAGAAATGGTTAGGG | 38.1 | 52.4 | 56.4 | 57.1 | 125 bp | 1.0 | 45.2 |
| trnL-UAA_p3 | ATCAATACCGGCAACAATGA | GGGTAGGAGAAATGGTTAGGG | 40.0 | 52.4 | 55.4 | 57.1 | 126 bp | 1.0 | 45.0 |
| trnL-UAA_p4 | TCAATACCGGCAACAATGAA | AGGAGAAATGGTTAGGGAGTCA | 40.0 | 45.5 | 55.6 | 58.2 | 121 bp | 1.0 | 44.2 |
| trnL-UAA_p5 | TCAATACCGGCAACAATGAA | GGAGAAATGGTTAGGGAGTCA | 40.0 | 47.6 | 55.6 | 56.7 | 120 bp | 1.0 | 43.5 |