Hotspot

psbT-psbN

LSC · 77726-77790 · 65 bp

Back to Vauquelinia

Pi 0.0487

MarkerSeek score 80.30

Primer available yes

Label psbT-psbN

Feature Metadata

label_name: psbT-psbN
feature_type: igs
region: LSC
length_bp: 65
variable_sites: 5
pi: 0.0487
unique_haplotype_count: 3
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 80.30

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
psbT-psbN_p1	TCGAGAACCGCCTAAAGTTC	GATCCATTCGAGGAACACGG	50.0	55.0	57.6	58.4	127-188 bp	1.0	79.2
psbT-psbN_p2	GAGAACCGCCTAAAGTTCCA	GATCCATTCGAGGAACACGG	50.0	55.0	57.5	58.4	125-187 bp	1.0	78.4
psbT-psbN_p3	TCGAGAACCGCCTAAAGTTC	AGATCCATTCGAGGAACACG	50.0	50.0	57.6	57.4	128-188 bp	1.0	77.9
psbT-psbN_p4	TCGAGAACCGCCTAAAGTTC	GGCAACCCTCTCAACAACTA	50.0	50.0	57.6	57.4	150-186 bp	1.0	77.6
psbT-psbN_p5	GAGAACCGCCTAAAGTTCCA	GGCAACCCTCTCAACAACTA	50.0	50.0	57.5	57.4	148-185 bp	1.0	76.8