Hotspot

trnS-GCU-trnG-UCC

LSC · 8440-9096 · 657 bp

Back to Stranvaesia

Pi 0.00203
MarkerSeek score 60.20
Primer available yes
Label trnS-GCU-trnG-UCC

Feature Metadata

label_name
trnS-GCU-trnG-UCC
feature_type
igs
region
LSC
length_bp
657
variable_sites
2
pi
0.00203
unique_haplotype_count
3
primer_available
yes
alignment_reliability
1.00
markerseek_score
60.20

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID fwd_seq rev_seq fwd_gc rev_gc fwd_tm rev_tm amplicon_size cross_species_success_rate primer_score
trnS-GCU-trnG-UCC_p1 CAATCCGACGCTTTAGTCCA AATCAAACCGAAAGACCCCT 50.0 45.0 58.0 57.0 768-793 bp 1.0 72.5
trnS-GCU-trnG-UCC_p2 CAATCCGACGCTTTAGTCCA ATCAAACCGAAAGACCCCTT 50.0 45.0 58.0 57.0 767-792 bp 1.0 72.5
trnS-GCU-trnG-UCC_p3 AATCCGACGCTTTAGTCCAC AATCAAACCGAAAGACCCCT 50.0 45.0 58.0 57.0 767-792 bp 1.0 72.5
trnS-GCU-trnG-UCC_p4 AATCCGACGCTTTAGTCCAC ATCAAACCGAAAGACCCCTT 50.0 45.0 58.0 57.0 766-791 bp 1.0 72.5
trnS-GCU-trnG-UCC_p5 ACGGAAAGAGAGGGATTCGA ATCAAACCGAAAGACCCCTT 50.0 45.0 58.2 57.0 821-846 bp 1.0 71.3