Hotspot

rps3

LSC · 82013-82732 · 720 bp

Back to Shibataea

Pi 0.000926

MarkerSeek score 46.80

Primer available yes

Label rps3

Feature Metadata

label_name: rps3
feature_type: gene
region: LSC
length_bp: 720
variable_sites: 1
pi: 0.000926
unique_haplotype_count: 2
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 46.80

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
rps3_p1	ACAGAATGGGAAGACAAGGC	TCCATCTTAGATTTCGATTCCCA	50.0	39.1	57.8	57.1	792-793 bp	1.0	47.5
rps3_p2	ACAGAATGGGAAGACAAGGC	TCCATCTTAGATTTCGATTCCCAG	50.0	41.7	57.8	58.1	792-793 bp	1.0	45.4
rps3_p3	CAGAATGGGAAGACAAGGCT	TCCATCTTAGATTTCGATTCCCA	50.0	39.1	57.5	57.1	791-792 bp	1.0	45.1
rps3_p4	ACAGAATGGGAAGACAAGGC	CCATCTTAGATTTCGATTCCCAG	50.0	43.5	57.8	56.8	791-792 bp	1.0	45.0
rps3_p5	ACAGAATGGGAAGACAAGGC	CCATCTTAGATTTCGATTCCCA	50.0	40.9	57.8	55.7	791-792 bp	1.0	43.9