Hotspot

ndhC-trnV-UAC

LSC · 51873-52556 · 684 bp

Back to Pleurospermum

Pi 0.0274

MarkerSeek score 73.00

Primer available yes

Label ndhC-trnV-UAC

Feature Metadata

label_name: ndhC-trnV-UAC
feature_type: igs
region: LSC
length_bp: 684
variable_sites: 51
pi: 0.0274
unique_haplotype_count: 8
primer_available: yes
alignment_reliability: 0.99
markerseek_score: 73.00

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
ndhC-trnV-UAC_p1	TCATATTCGTAAAGCAGAAACA	GTTCGAGTCCGTATAGCCCT	31.8	55.0	53.9	58.7	721-743 bp	1.0	49.6
ndhC-trnV-UAC_p2	TCATATTCGTAAAGCAGAAACA	CCGAGAAAGTCTACGGTTCG	31.8	55.0	53.9	58.1	736-758 bp	1.0	49.5
ndhC-trnV-UAC_p3	ATCATATTCGTAAAGCAGAAACA	CCGAGAAAGTCTACGGTTCG	30.4	55.0	54.5	58.1	737-759 bp	1.0	49.5
ndhC-trnV-UAC_p4	TCATATTCGTAAAGCAGAAACAT	CCGAGAAAGTCTACGGTTCG	30.4	55.0	54.5	58.1	736-758 bp	1.0	49.5
ndhC-trnV-UAC_p5	CATATTCGTAAAGCAGAAACA	CCGAGAAAGTCTACGGTTCG	33.3	55.0	52.3	58.1	735-757 bp	1.0	49.5