Hotspot

trnT-UGU-trnL-UAA

LSC · 48021-48728 · 708 bp

Back to Physochlaina

Pi 0.00282

MarkerSeek score 60.60

Primer available yes

Label trnT-UGU-trnL-UAA

Feature Metadata

label_name: trnT-UGU-trnL-UAA
feature_type: igs
region: LSC
length_bp: 708
variable_sites: 3
pi: 0.00282
unique_haplotype_count: 3
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 60.60

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
trnT-UGU-trnL-UAA_p1	GCGATGCTCTAACCTCTGAG	CCGTAGCGTCTACCGATTTC	55.0	55.0	57.9	58.2	769 bp	1.0	77.3
trnT-UGU-trnL-UAA_p2	GGAATCGAACCGATGACCAT	CCGTAGCGTCTACCGATTTC	50.0	55.0	57.8	58.2	801 bp	1.0	76.4
trnT-UGU-trnL-UAA_p3	GCGATGCTCTAACCTCTGAG	CGTCTACCGATTTCGCCATA	55.0	50.0	57.9	57.6	763 bp	1.0	76.0
trnT-UGU-trnL-UAA_p4	CAATAGGGAAAAGCCGGCTA	CCGTAGCGTCTACCGATTTC	50.0	55.0	57.7	58.2	823 bp	1.0	75.6
trnT-UGU-trnL-UAA_p5	GGAATCGAACCGATGACCAT	CGTCTACCGATTTCGCCATA	50.0	50.0	57.8	57.6	795 bp	1.0	75.1