Hotspot

trnT-UGU-trnL-UAA

LSC · 49180-50360 · 1181 bp

Back to Physocarpus

Pi 0.000847
MarkerSeek score 59.20
Primer available yes
Label trnT-UGU-trnL-UAA

Feature Metadata

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID fwd_seq rev_seq fwd_gc rev_gc fwd_tm rev_tm amplicon_size cross_species_success_rate primer_score
trnT-UGU-trnL-UAA_p1 GCGATGCTCTAACCTCTGAG ACCAATTTCGCCATATCCCC 55.0 50.0 57.9 58.0 1231-1238 bp 1.0 79.0
trnT-UGU-trnL-UAA_p2 GCGATGCTCTAACCTCTGAG TAGCGTCTACCAATTTCGCC 55.0 50.0 57.9 58.1 1239-1246 bp 1.0 78.4
trnT-UGU-trnL-UAA_p3 GGAATCGAACCGATGACCAT ACCAATTTCGCCATATCCCC 50.0 50.0 57.8 58.0 1263-1270 bp 1.0 78.1
trnT-UGU-trnL-UAA_p4 ATGGAGAAAAGCCGGCTATC ACCAATTTCGCCATATCCCC 50.0 50.0 57.7 58.0 1283-1290 bp 1.0 77.9
trnT-UGU-trnL-UAA_p5 GGAATCGAACCGATGACCAT TAGCGTCTACCAATTTCGCC 50.0 50.0 57.8 58.1 1271-1278 bp 1.0 77.6