Markers + reference

Myoporum

20 species · Scrophulariaceae · Lamiales

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Species 20
Genome length 151–152 kb
Candidate markers 264
Primer pairs —

Genome-wide nucleotide diversity

Sliding-window nucleotide diversity
Sliding-window nucleotide diversity (π) across the plastome.

Candidate markers

11 hotspot labels from the diversity plot in genomic order, plus the top 10 remaining regions by MarkerSeek score (out of 264 candidates).

Label Region Length (bp) Pi Alignment reliability MarkerSeek score Primer available Action
trnH-GUG-psbA LSC 327 0.0112 1.00 43.9 no View details
trnK-UUU-rps16 LSC 993 0.0079 0.99 57.0 no View details
atpH-atpI LSC 1048 0.0059 0.98 44.2 no View details
trnT-GGU-psbD LSC 1329 0.0106 1.00 59.5 no View details
ycf3-trnS-GGA LSC 834 0.0063 1.00 59.0 no View details
petA-psbJ LSC 1078 0.0088 1.00 62.3 no View details
petD LSC 1227 0.0094 1.00 50.9 no View details
rpl23-ycf2 LSC 387 0.0072 1.00 49.3 no View details
ycf1 IRb 999 0.0104 0.99 54.7 no View details
rpl32-trnL-UAG SSC 839 0.0102 1.00 60.1 no View details
ycf1 SSC 5388 0.0042 1.00 37.6 no View details
trnT-UGU-trnL-UAA LSC 680 0.0066 1.00 67.7 no View details
ccsA-ndhD SSC 257 0.0088 1.00 58.2 no View details
ycf2-trnH-GUG LSC 6 0.1161 1.00 56.8 no View details
psbB-psbT LSC 177 0.0091 0.99 56.8 no View details
petN-psbM LSC 985 0.0035 1.00 56.6 no View details
lhbA-trnG-UCC LSC 285 0.0125 0.99 56.5 no View details
clpP LSC 1959 0.0015 1.00 55.5 no View details
rps4-trnT-UGU LSC 379 0.0040 1.00 54.4 no View details
trnS-GCU-trnG-UCC LSC 663 0.0044 1.00 52.9 no View details
rbcL-accD LSC 682 0.0028 1.00 52.7 no View details
Candidate markers include all hotspot labels marked in the diversity plot, listed in genomic order, plus the top 10 remaining regions by MarkerSeek score. Primer design is attempted for every listed region. Primer available: yes means at least one valid primer pair was found; no means no valid pair passed screening; NA means primer design was skipped.

Result downloads

candidate_marker_features.tsv primers.tsv

Reference species (20)

One GenBank record per species. Use the NCBI button to open the Nucleotide entry for the listed accession.

Species Accession Length (bp) Link
Myoporum acuminatum NC_077408.1 151736 View on NCBI ↗
Myoporum bateae NC_077407.1 151107 View on NCBI ↗
Myoporum betcheanum NC_077275.1 151675 View on NCBI ↗
Myoporum boninense NC_077409.1 151573 View on NCBI ↗
Myoporum bontioides NC_050956.1 151742 View on NCBI ↗
Myoporum brevipes NC_077401.1 151687 View on NCBI ↗
Myoporum caprarioides NC_077271.1 151739 View on NCBI ↗
Myoporum cordifolium NC_077445.1 151764 View on NCBI ↗
Myoporum degeneri NC_077432.1 151652 View on NCBI ↗
Myoporum floribundum NC_077449.1 151069 View on NCBI ↗
Myoporum insulare NC_077404.1 151725 View on NCBI ↗
Myoporum laetum NC_050955.1 151725 View on NCBI ↗
Myoporum obscurum NC_077435.1 151660 View on NCBI ↗
Myoporum parvifolium NC_077269.1 151785 View on NCBI ↗
Myoporum petiolatum NC_077268.1 151663 View on NCBI ↗
Myoporum platycarpum NC_077273.1 151712 View on NCBI ↗
Myoporum sandwicense NC_077431.1 151687 View on NCBI ↗
Myoporum stokesii NC_077433.1 151689 View on NCBI ↗
Myoporum tetrandrum NC_077452.1 151746 View on NCBI ↗
Myoporum wilderi NC_077434.1 151680 View on NCBI ↗