Hotspot

rpoC1-rpoB

LSC · 23955-23980 · 26 bp

Back to Moquilea

Pi 0.0385

MarkerSeek score 74.60

Primer available yes

Label rpoC1-rpoB

Feature Metadata

label_name: rpoC1-rpoB
feature_type: igs
region: LSC
length_bp: 26
variable_sites: 1
pi: 0.0385
unique_haplotype_count: 2
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 74.60

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
rpoC1-rpoB_p1	TGGCCCAAGCACTTATTTGT	ACGATCTTTGGCTCTGGAAC	45.0	50.0	58.0	57.9	175 bp	1.0	79.6
rpoC1-rpoB_p2	TGTCACCTCTCCGACAATCT	ACGATCTTTGGCTCTGGAAC	50.0	50.0	58.1	57.9	216 bp	1.0	79.0
rpoC1-rpoB_p3	TAGGATTTTCGTGGCCCAAG	ACGATCTTTGGCTCTGGAAC	50.0	50.0	57.9	57.9	186 bp	1.0	78.6
rpoC1-rpoB_p4	GTAGGATTTTCGTGGCCCAA	ACGATCTTTGGCTCTGGAAC	50.0	50.0	58.2	57.9	187 bp	1.0	78.3
rpoC1-rpoB_p5	ACCTCTCCGACAATCTCTCC	ACGATCTTTGGCTCTGGAAC	55.0	50.0	58.2	57.9	212 bp	1.0	77.7