Hotspot

psbM-trnD-GUC

LSC · 30864-31936 · 1073 bp

Back to Iochroma

Pi 0.00173

MarkerSeek score 51.00

Primer available yes

Label psbM-trnD-GUC

Feature Metadata

label_name: psbM-trnD-GUC
feature_type: igs
region: LSC
length_bp: 1073
variable_sites: 5
pi: 0.00173
unique_haplotype_count: 5
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 51.00

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
psbM-trnD-GUC_p1	AGTAGAAAAGCGGTAGGAACT	CCCGTATTTCCCTGGGATTG	42.9	55.0	56.4	58.0	1225-1228 bp	1.0	59.5
psbM-trnD-GUC_p2	AGTAGAAAAGCGGTAGGAACT	TCCCGTATTTCCCTGGGATT	42.9	50.0	56.4	58.1	1226-1229 bp	1.0	58.8
psbM-trnD-GUC_p3	AAGTAGAAAAGCGGTAGGAACT	CCCGTATTTCCCTGGGATTG	40.9	55.0	57.1	58.0	1226-1229 bp	1.0	57.3
psbM-trnD-GUC_p4	AGAAAAGCGGTAGGAACTAGA	CCCGTATTTCCCTGGGATTG	42.9	55.0	56.1	58.0	1222-1225 bp	1.0	57.3
psbM-trnD-GUC_p5	AAGTAGAAAAGCGGTAGGAACT	TCCCGTATTTCCCTGGGATT	40.9	50.0	57.1	58.1	1227-1230 bp	1.0	56.6