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clpP-psbB

LSC · 74537-75376 · 840 bp

Back to Halophila

Pi 0.234

MarkerSeek score 78.10

Primer available yes

Label clpP-psbB

Feature Metadata

label_name: clpP-psbB
feature_type: igs
region: LSC
length_bp: 840
variable_sites: 146
pi: 0.234
unique_haplotype_count: 2
primer_available: yes
alignment_reliability: 0.74
markerseek_score: 78.10

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
clpP-psbB_p1	GCAGTAGAACCCTACCGTTG	CCGCTAATTCGTATAGGGCC	55.0	55.0	58.0	58.0	1271-1346 bp	1.0	91.9
clpP-psbB_p2	GCAGTAGAACCCTACCGTTG	CGGATCAAGAACAGGGTCAG	55.0	55.0	58.0	58.0	1303-1378 bp	1.0	91.8
clpP-psbB_p3	GCAGTAGAACCCTACCGTTG	CTGCCAAAAAGCACAAACCA	55.0	45.0	58.0	58.0	1472-1547 bp	1.0	91.8
clpP-psbB_p4	GCAGTAGAACCCTACCGTTG	TGCCAAAAAGCACAAACCAG	55.0	45.0	58.0	58.0	1471-1546 bp	1.0	91.8
clpP-psbB_p5	GCAGTAGAACCCTACCGTTG	CATACAAGCCCGTGACATGA	55.0	50.0	58.0	58.0	1628-1703 bp	1.0	91.8