Hotspot

ndhC-trnV-UAC

LSC · 50128-50884 · 757 bp

Back to Gynoxys

Pi 0.00269

MarkerSeek score 56.40

Primer available yes

Label ndhC-trnV-UAC

Feature Metadata

label_name: ndhC-trnV-UAC
feature_type: igs
region: LSC
length_bp: 757
variable_sites: 6
pi: 0.00269
unique_haplotype_count: 7
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 56.40

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
ndhC-trnV-UAC_p1	CCCTTTGCTAATCGGAGCTA	AGAAGGTCTACGGTTCGAGT	50.0	50.0	57.1	57.8	900-901 bp	1.0	71.8
ndhC-trnV-UAC_p2	TCGGAGCTAAAAATCCCGAA	AGAAGGTCTACGGTTCGAGT	45.0	50.0	56.9	57.8	889-890 bp	1.0	70.5
ndhC-trnV-UAC_p3	CCCTTTGCTAATCGGAGCTAA	AGAAGGTCTACGGTTCGAGT	47.6	50.0	57.8	57.8	900-901 bp	1.0	69.5
ndhC-trnV-UAC_p4	CCCTTTGCTAATCGGAGCTA	GAAGGTCTACGGTTCGAGTC	50.0	55.0	57.1	57.5	899-900 bp	1.0	69.0
ndhC-trnV-UAC_p5	GGCCCTTTGCTAATCGGAG	AGAAGGTCTACGGTTCGAGT	57.9	50.0	58.3	57.8	902-903 bp	1.0	68.7