Hotspot

rps19-psbA

LSC · 41703-41870 · 168 bp

Back to Goudaea

Pi 0.0536

MarkerSeek score 79.70

Primer available yes

Label rps19-psbA

Feature Metadata

label_name: rps19-psbA
feature_type: igs
region: LSC
length_bp: 168
variable_sites: 9
pi: 0.0536
unique_haplotype_count: 2
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 79.70

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
rps19-psbA_p1	TCTGACTTTCGCGAGACATG	AGCTGTTGTTGAAGCTCCAT	50.0	45.0	58.0	57.7	251-253 bp	1.0	80.5
rps19-psbA_p2	TCTGACTTTCGCGAGACATG	ATGCTCACAACTTCCCCCTA	50.0	50.0	58.0	58.3	276-278 bp	1.0	79.8
rps19-psbA_p3	CCTACTCTGACTTTCGCGAG	AGCTGTTGTTGAAGCTCCAT	55.0	45.0	57.8	57.7	256-258 bp	1.0	79.1
rps19-psbA_p4	CCTACTCTGACTTTCGCGAG	ATGCTCACAACTTCCCCCTA	55.0	50.0	57.8	58.3	281-283 bp	1.0	78.5
rps19-psbA_p5	TCTGACTTTCGCGAGACATG	TAATGCTCACAACTTCCCCC	50.0	50.0	58.0	57.5	278-280 bp	1.0	78.4