Hotspot

psbE-petL

LSC · 63889-65285 · 1397 bp

Back to Farsetia

Pi 0.00718

MarkerSeek score 63.20

Primer available yes

Label psbE-petL

Feature Metadata

label_name: psbE-petL
feature_type: igs
region: LSC
length_bp: 1397
variable_sites: 10
pi: 0.00718
unique_haplotype_count: 2
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 63.20

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
psbE-petL_p1	ATAACCAGCCCGCAATGAAT	AGCTGCTAGTAGAAAACCGA	45.0	45.0	57.9	56.3	1547-1548 bp	1.0	66.5
psbE-petL_p2	AATAACCAGCCCGCAATGAA	AGCTGCTAGTAGAAAACCGA	45.0	45.0	58.2	56.3	1548-1549 bp	1.0	65.8
psbE-petL_p3	ATAACCAGCCCGCAATGAAT	AAGCTGCTAGTAGAAAACCGA	45.0	42.9	57.9	57.0	1548-1549 bp	1.0	64.5
psbE-petL_p4	ATAACCAGCCCGCAATGAAT	AGCTGCTAGTAGAAAACCGAA	45.0	42.9	57.9	57.0	1547-1548 bp	1.0	64.5
psbE-petL_p5	CCGCAATGAATAGGGAAGGT	AGCTGCTAGTAGAAAACCGA	50.0	45.0	57.7	56.3	1538-1539 bp	1.0	64.2