Hotspot

psbL-psbF

LSC · 62428-62449 · 22 bp

Back to Elytrophorus

Pi 0.0455

MarkerSeek score 77.90

Primer available yes

Label psbL-psbF

Feature Metadata

label_name: psbL-psbF
feature_type: igs
region: LSC
length_bp: 22
variable_sites: 1
pi: 0.0455
unique_haplotype_count: 2
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 77.90

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
psbL-psbF_p1	CATTCGGGTTTGATTGTGTCA	CACGGATTAGCTGTACCCAC	42.9	55.0	57.1	58.1	113 bp	1.0	64.9
psbL-psbF_p2	AGACTGGTCCGATTCAATTCA	CACGGATTAGCTGTACCCAC	42.9	55.0	57.0	58.1	144 bp	1.0	64.2
psbL-psbF_p3	CATTCGGGTTTGATTGTGTCA	TCACGGATTAGCTGTACCCA	42.9	50.0	57.1	58.1	114 bp	1.0	64.2
psbL-psbF_p4	AGACTGGTCCGATTCAATTCA	TCACGGATTAGCTGTACCCA	42.9	50.0	57.0	58.1	145 bp	1.0	63.5
psbL-psbF_p5	AGACTGGTCCGATTCAATTCA	TCAGCAATGCAGTTCATCCA	42.9	45.0	57.0	57.8	102 bp	1.0	63.3