Hotspot

rrn16-trnI-GAU

IRb · 104189-104482 · 294 bp

Back to Drummondita

Pi 0.0249
MarkerSeek score 55.90
Primer available yes
Label rrn16-trnI-GAU

Feature Metadata

label_name
rrn16-trnI-GAU
feature_type
igs
region
IRb
length_bp
294
variable_sites
11
pi
0.0249
unique_haplotype_count
2
primer_available
yes
alignment_reliability
1.00
markerseek_score
55.90

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID fwd_seq rev_seq fwd_gc rev_gc fwd_tm rev_tm amplicon_size cross_species_success_rate primer_score
rrn16-trnI-GAU_p1 CAAGGTAGCCGTACTGGAAG CTATCCATGTGGCTGAGAGC 55.0 55.0 57.7 57.8 420 bp 1.0 78.4
rrn16-trnI-GAU_p2 CAAGGTAGCCGTACTGGAAG GGCACAACGACGCAATTATC 55.0 50.0 57.7 58.2 388 bp 1.0 78.4
rrn16-trnI-GAU_p3 CAAGGTAGCCGTACTGGAAG CGCTGATGAGCACATTGAAC 55.0 50.0 57.7 57.8 439 bp 1.0 78.3
rrn16-trnI-GAU_p4 AGTGACTGGAGTGAAGTCGT CTATCCATGTGGCTGAGAGC 50.0 55.0 58.3 57.8 442 bp 1.0 78.2
rrn16-trnI-GAU_p5 AGTGACTGGAGTGAAGTCGT CGCTGATGAGCACATTGAAC 50.0 50.0 58.3 57.8 461 bp 1.0 78.1