Hotspot

trnT-UGU-trnL-UAA

LSC · 47760-48355 · 596 bp

Back to Cymbidium

Pi 0.0263
MarkerSeek score 71.70
Primer available yes
Label trnT-UGU-trnL-UAA

Feature Metadata

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID fwd_seq rev_seq fwd_gc rev_gc fwd_tm rev_tm amplicon_size cross_species_success_rate primer_score
trnT-UGU-trnL-UAA_p1 GCGATGCTCTAACCTCTGAG ACCAATTTCGCCATATCCCC 55.0 50.0 57.9 58.0 616-715 bp 1.0 90.9
trnT-UGU-trnL-UAA_p2 GCGATGCTCTAACCTCTGAG TAGCGTCTACCAATTTCGCC 55.0 50.0 57.9 58.1 624-723 bp 1.0 90.4
trnT-UGU-trnL-UAA_p3 GGAATCGAACCGATGACCAT ACCAATTTCGCCATATCCCC 50.0 50.0 57.8 58.0 648-747 bp 1.0 90.0
trnT-UGU-trnL-UAA_p4 AGAAAAAGAGCCGGCTATCG ACCAATTTCGCCATATCCCC 50.0 50.0 58.1 58.0 667-766 bp 0.931818 88.8
trnT-UGU-trnL-UAA_p5 AGAAAAAGAGCCGGCTATCG TAGCGTCTACCAATTTCGCC 50.0 50.0 58.1 58.1 675-774 bp 0.931818 88.2