Hotspot

rps16

LSC · 4521-5607 · 1087 bp

Back to Chimonobambusa

Pi 0.00117

MarkerSeek score 51.70

Primer available yes

Label rps16

Feature Metadata

label_name: rps16
feature_type: gene
region: LSC
length_bp: 1087
variable_sites: 7
pi: 0.00117
unique_haplotype_count: 7
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 51.70

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
rps16_p1	TGGCACGACATAAATCCAGT	TCCCTATACCACTTTGCAATGA	45.0	40.9	57.2	57.1	1247-1248 bp	1.0	51.4
rps16_p2	TGGCACGACATAAATCCAGT	TCAATTCCCTATACCACTTTGCA	45.0	39.1	57.2	57.8	1252-1253 bp	1.0	48.8
rps16_p3	TGGCACGACATAAATCCAGT	TCCCTATACCACTTTGCAATGAA	45.0	39.1	57.2	57.8	1247-1248 bp	1.0	48.8
rps16_p4	TGGCACGACATAAATCCAGT	TTCCCTATACCACTTTGCAATGA	45.0	39.1	57.2	57.8	1248-1249 bp	1.0	48.8
rps16_p5	TGGCACGACATAAATCCAGT	CCCTATACCACTTTGCAATGA	45.0	42.9	57.2	55.6	1246-1247 bp	1.0	47.4