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argB-trnM(cat)

Genome · 58485-59614 · 1130 bp

Back to Chiharaea

Pi 0.0177

MarkerSeek score 62.30

Primer available yes

Label argB-trnM(cat)

Feature Metadata

label_name: argB-trnM(cat)
feature_type: igs
region: Genome
length_bp: 1130
variable_sites: 20
pi: 0.0177
unique_haplotype_count: 2
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 62.30

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
argB-trnM(cat)_p1	TTAGTCAAGGCGTGCAATCA	CGACCTTGGGCTTATGAGTC	45.0	55.0	57.8	58.1	1284 bp	1.0	79.4
argB-trnM(cat)_p2	TGATGGCAGAGTTGAGCATG	CGACCTTGGGCTTATGAGTC	50.0	55.0	58.3	58.1	1253 bp	1.0	78.8
argB-trnM(cat)_p3	TAGTCAAGGCGTGCAATCAG	CGACCTTGGGCTTATGAGTC	50.0	55.0	58.3	58.1	1283 bp	1.0	78.6
argB-trnM(cat)_p4	TTAGTCAAGGCGTGCAATCA	CTCAAGCGGGATTTGAACCT	45.0	50.0	57.8	58.2	1305 bp	1.0	78.5
argB-trnM(cat)_p5	TGATGGCAGAGTTGAGCATG	CTCAAGCGGGATTTGAACCT	50.0	50.0	58.3	58.2	1274 bp	1.0	77.9