Hotspot

trnL-CAA-ycf2

IRa · 148245-148943 · 699 bp

Back to Caiophora

Pi 0.00858
MarkerSeek score 63.70
Primer available yes
Label trnL-CAA-ycf2

Feature Metadata

label_name
trnL-CAA-ycf2
feature_type
igs
region
IRa
length_bp
699
variable_sites
6
pi
0.00858
unique_haplotype_count
2
primer_available
yes
alignment_reliability
1.00
markerseek_score
63.70

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID fwd_seq rev_seq fwd_gc rev_gc fwd_tm rev_tm amplicon_size cross_species_success_rate primer_score
trnL-CAA-ycf2_p1 AAATGGTAGACACGCGAGAC ATGGCTTTTCCCGGATGAAA 50.0 45.0 58.0 57.8 808 bp 1.0 78.7
trnL-CAA-ycf2_p2 AAATGGTAGACACGCGAGAC TGGCTTTTCCCGGATGAAAT 50.0 45.0 58.0 57.8 807 bp 1.0 78.7
trnL-CAA-ycf2_p3 TGAAATGGTAGACACGCGAG ATGGCTTTTCCCGGATGAAA 50.0 45.0 58.0 57.8 810 bp 1.0 78.7
trnL-CAA-ycf2_p4 TGAAATGGTAGACACGCGAG TGGCTTTTCCCGGATGAAAT 50.0 45.0 58.0 57.8 809 bp 1.0 78.7
trnL-CAA-ycf2_p5 AAATGGTAGACACGCGAGAC AAGATGGCTTTTCCCGGATG 50.0 50.0 58.0 58.2 811 bp 1.0 78.7