Hotspot

trnY-GUA-trnE-UUC

LSC · 31292-31350 · 59 bp

Back to Allomorphia

Pi 0.0407

MarkerSeek score 62.50

Primer available yes

Label trnY-GUA-trnE-UUC

Feature Metadata

label_name: trnY-GUA-trnE-UUC
feature_type: igs
region: LSC
length_bp: 59
variable_sites: 6
pi: 0.0407
unique_haplotype_count: 2
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 62.50

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
trnY-GUA-trnE-UUC_p1	CGGATCAGGGAATTCTTGGG	AAGTATGCCCCCATCGTCTA	55.0	50.0	58.0	57.9	238 bp	1.0	81.0
trnY-GUA-trnE-UUC_p2	CGGATCAGGGAATTCTTGGG	TAATATGATGGCGGTTGGGC	55.0	50.0	58.0	58.1	258 bp	1.0	80.9
trnY-GUA-trnE-UUC_p3	TCATTTCATGGCGGATCAGG	AAGTATGCCCCCATCGTCTA	50.0	50.0	58.0	57.9	249 bp	1.0	80.9
trnY-GUA-trnE-UUC_p4	TCATTTCATGGCGGATCAGG	TAATATGATGGCGGTTGGGC	50.0	50.0	58.0	58.1	269 bp	1.0	80.8
trnY-GUA-trnE-UUC_p5	CGGATCAGGGAATTCTTGGG	TCGTCTAGTGGTTCAGGACA	55.0	50.0	58.0	57.7	225 bp	1.0	79.7