| Genus | Family | Order | Species | Genome length | Top marker | Markers | Primers | Action |
|---|---|---|---|---|---|---|---|---|
| Ceratophyllum | Ceratophyllaceae | Ceratophyllales | 4 | 156–157 kb | rpl32-trnL-UAG (78.2) | 269 | 95 | View |
| Ceratopteris | Pteridaceae | Polypodiales | 3 | 149–154 kb | petB (83.3) | 270 | 95 | View |
| Ceratostigma | Plumbaginaceae | Caryophyllales | 3 | 165–165 kb | ycf3-accD (80.4) | 261 | 65 | View |
| Cercidiphyllum | Cercidiphyllaceae | Saxifragales | 2 | 160–160 kb | DR679_pgr001-trnI-GAU (68.9) | 264 | 110 | View |
| Cercis | Fabaceae | Fabales | 3 | 159–159 kb | trnN-GUU-ndhF (77.7) | 261 | 85 | View |
| Cercocarpus | Rosaceae | Rosales | 3 | 158–158 kb | rpl2-trnH-GUG (73.8) | 267 | 100 | View |
| Ceriops | Rhizophoraceae | Malpighiales | 3 | 164–167 kb | trnK-UUU-trnQ-UUG (86.2) | 265 | 85 | View |
| Ceropegia | Apocynaceae | Gentianales | 4 | 161–161 kb | rpl2-trnH-GUG (73.1) | 267 | 100 | View |
| Chaenomeles | Rosaceae | Rosales | 4 | 160–160 kb | ycf3-trnS (49.7) | 270 | 100 | View |
| Chaenorhinum | Plantaginaceae | Lamiales | 2 | 151–151 kb | psbF-psbE (83.9) | 269 | 100 | View |
| Chaerophyllum | Apiaceae | Apiales | 3 | 153–154 kb | trnH-GUG-psbA (87.8) | 268 | 85 | View |
| Chaetoceros | Chaetocerotaceae | Chaetocerotales | 9 | 116–119 kb | ycf89 (82.1) | 327 | 80 | View |
| Chaetophoropsis | Chaetophoraceae | Chaetophorales | 2 | 104–215 kb | rpl16-atpF (86.1) | 80 | 70 | View |
| Chaetoseris | Asteraceae | Asterales | 6 | 153–153 kb | trnT-GGU-psbD (49.0) | 275 | 90 | View |
| Chamaecrista | Fabaceae | Fabales | 2 | 158–159 kb | psbE-petL (85.2) | 270 | — | View |
| Chamaecyparis | Cupressaceae | Cupressales | 4 | 127–128 kb | rps12-clpP (90.8) | 260 | 70 | View |
| Chamaedorea | Arecaceae | Arecales | 5 | 156–157 kb | psaC-ndhE (78.4) | 271 | 95 | View |
| Chamaegastrodia | Orchidaceae | Asparagales | 2 | 116–131 kb | accD-psaI (83.6) | 224 | 65 | View |
| Chamaelirium | Melanthiaceae | Liliales | 2 | 157–158 kb | rps15-ycf1 (78.2) | 274 | 90 | View |
| Chamaenerion | Onagraceae | Myrtales | 4 | 159–161 kb | trnL-trnF (85.4) | 261 | 95 | View |
| Chamaerhodos | Rosaceae | Rosales | 5 | 154–154 kb | ycf1-ndhF (80.0) | 269 | 95 | View |
| Chamaesium | Apiaceae | Apiales | 9 | 145–156 kb | rpl32-trnL-UAG (83.3) | 273 | 100 | View |
| Chasechloa | Poaceae | Poales | 2 | 138–140 kb | ndhI-ndhA (77.2) | 254 | 110 | View |
| Chasmanthium | Poaceae | Poales | 2 | 141–141 kb | trnG-GCC-trnfM-CAU (65.2) | 265 | 90 | View |
| Cheirodendron | Araliaceae | Apiales | 2 | 157–157 kb | atpF-atpH (66.3) | 261 | 90 | View |
| Cheirolophus | Asteraceae | Asterales | 2 | 152–153 kb | trnW-CCA-trnP-UGG (70.0) | 263 | 100 | View |
| Cheirostylis | Orchidaceae | Asparagales | 5 | 147–152 kb | petA-psbJ (86.2) | 272 | 100 | View |
| Chengiodendron | Oleaceae | Lamiales | 2 | 156–156 kb | rpl32-trnL(UAG) (60.1) | 266 | 100 | View |
| Cheniella | Fabaceae | Fabales | 15 | 157–157 kb | rpl32-trnL-UAG (75.0) | 270 | 95 | View |
| Chenopodiastrum | Amaranthaceae | Caryophyllales | 2 | 152–153 kb | rps16-trnQ-UUG (83.0) | 271 | 95 | View |
| Chenopodium | Amaranthaceae | Caryophyllales | 14 | 152–152 kb | rps4-trnT-UGU (68.5) | 267 | 95 | View |
| Chesneya | Fabaceae | Fabales | 2 | 127–129 kb | petA-psbJ (88.6) | 223 | 75 | View |
| Chiharaea | Corallinaceae | Corallinales | 2 | 181–181 kb | rpl1-rpl11 (77.5) | 449 | 105 | View |
| Chikusichloa | Poaceae | Poales | 2 | 137–137 kb | trnG-UCC (64.5) | 265 | 100 | View |
| Chiloschista | Orchidaceae | Asparagales | 5 | 143–145 kb | rpoB-trnC-GCA (77.1) | 260 | 95 | View |
| Chimonanthus | Calycanthaceae | Laurales | 6 | 153–153 kb | trnR-ACG-trnN-GUU (74.5) | 265 | 95 | View |
| Chimonobambusa | Poaceae | Poales | 11 | 139–140 kb | trnG-UCC-trnT-GGU (65.0) | 271 | 90 | View |
| Chimonocalamus | Poaceae | Poales | 10 | 140–140 kb | rps19-psbA (71.5) | 266 | 90 | View |
| Chionanthus | Oleaceae | Lamiales | 19 | 155–156 kb | trnH(GUG)-psbA (85.3) | 264 | 90 | View |
| Chionographis | Melanthiaceae | Liliales | 3 | 155–157 kb | petG-trnW-CCA (79.5) | 274 | 105 | View |
| Chloranthus | Chloranthaceae | Chloranthales | 7 | 158–159 kb | trnS-GCU-trnG-UCC (83.9) | 267 | 100 | View |
| Chloris | Poaceae | Poales | 3 | 135–136 kb | trnR-UCU-trnfM-CAU (78.4) | 273 | 95 | View |
| Chloroparvula | Chloropicaceae | Chloropicales | 2 | 70–71 kb | atpF (82.4) | 192 | 70 | View |
| Chlorophytum | Asparagaceae | Asparagales | 2 | 154–154 kb | trnH-GUG-psbA (82.5) | 267 | 80 | View |
| Chloropicon | Chloropicaceae | Chloropicales | 6 | 64–65 kb | ftsH (81.4) | 196 | 70 | View |
| Chondracanthus | Gigartinaceae | Gigartinales | 2 | 176–176 kb | ompR-rns (86.0) | 454 | 100 | View |
| Chonemorpha | Apocynaceae | Gentianales | 2 | 156–156 kb | ndhG-ndhI (72.8) | 275 | 95 | View |
| Chorda | Chordaceae | Laminariales | 2 | 130–144 kb | rnl-trnA-UGC (85.8) | 346 | 100 | View |
| Chorilaena | Rutaceae | Sapindales | 2 | 157–157 kb | ccsA-ndhD (78.8) | 268 | 100 | View |
| Chorispora | Brassicaceae | Brassicales | 2 | 162–163 kb | rpl23-trnH-CAC (71.1) | 262 | 65 | View |
2112 genera