| Genus | Family | Order | Species | Genome length | Top marker | Markers | Primers | Action |
|---|---|---|---|---|---|---|---|---|
| Cicer | Fabaceae | Fabales | 4 | 125–126 kb | trnN-GUU-trnR-ACG (86.3) | 224 | 80 | View |
| Cicerbita | Asteraceae | Asterales | 4 | 153–153 kb | trnG-UCC-trnT (74.6) | 272 | 80 | View |
| Cichorium | Asteraceae | Asterales | 2 | 153–153 kb | trnC-GCA-petN (67.6) | 281 | 80 | View |
| Cinchona | Rubiaceae | Gentianales | 4 | 155–157 kb | ccsA-ndhD (72.7) | 273 | 100 | View |
| Cinnamomum | Lauraceae | Laurales | 31 | 153–159 kb | rps19-rpl2 (67.2) | 256 | 75 | View |
| Circaea | Onagraceae | Myrtales | 7 | 156–156 kb | trnH-GUG-psbA (70.9) | 267 | 105 | View |
| Cirsium | Asteraceae | Asterales | 18 | 152–153 kb | ndhF (79.4) | 271 | 90 | View |
| Cissus | Vitaceae | Vitales | 5 | 158–160 kb | petA-psbJ (88.4) | 255 | 85 | View |
| Cistanthe | Montiaceae | Caryophyllales | 2 | 156–157 kb | psbC-trnS-UGA (75.6) | 268 | 95 | View |
| Citropsis | Rutaceae | Sapindales | 3 | 159–160 kb | psbC-trnS-UGA (57.2) | 285 | 95 | View |
| Citrullus | Cucurbitaceae | Cucurbitales | 4 | 157–157 kb | trnG-TCC-trnR-TCT (76.9) | 265 | 90 | View |
| Citrus | Rutaceae | Sapindales | 35 | 160–161 kb | ndhK-ndhC (60.1) | 276 | 95 | View |
| Claderia | Orchidaceae | Asparagales | 2 | 161–161 kb | rpl2-rpl23 (76.5) | 271 | 105 | View |
| Cladopus | Podostemaceae | Malpighiales | 4 | 133–133 kb | trnQ-UUG-trnK-UUU (79.7) | 256 | 90 | View |
| Clausena | Rutaceae | Sapindales | 5 | 160–161 kb | trnH-GUG-psbA (83.9) | 265 | 105 | View |
| Clausia | Brassicaceae | Brassicales | 2 | 156–158 kb | trnH-CAC-psbA (79.6) | 270 | 70 | View |
| Cleisostoma | Orchidaceae | Asparagales | 11 | 147–149 kb | clpP-psbB (87.7) | 267 | 100 | View |
| Cleistogenes | Poaceae | Poales | 11 | 134–135 kb | trnC-GCA-rpoB (56.7) | 268 | 90 | View |
| Clematis | Ranunculaceae | Ranunculales | 160 | 159–160 kb | infA-rps4 (78.3) | 278 | 85 | View |
| Clematoclethra | Actinidiaceae | Ericales | 2 | 157–157 kb | trnI-CAU-trnH-GUG (88.3) | 263 | 95 | View |
| Cleome | Cleomaceae | Brassicales | 2 | 158–159 kb | trnT-GGU-psbD (83.8) | 264 | 75 | View |
| Cleomella | Cleomaceae | Brassicales | 2 | 154–154 kb | ndhD-psaC (80.9) | 268 | 100 | View |
| Clerodendrum | Lamiaceae | Lamiales | 5 | 152–152 kb | trnH-GUG-psbA (79.1) | 272 | 85 | View |
| Clethra | Clethraceae | Ericales | 2 | 157–157 kb | rpl16-rps3 (71.0) | 273 | 110 | View |
| Climacoptera | Amaranthaceae | Caryophyllales | 2 | 150–150 kb | rpl23 (87.7) | 269 | 100 | View |
| Clinopodium | Lamiaceae | Lamiales | 8 | 151–152 kb | rps16-trnQ(UUG) (81.1) | 274 | 85 | View |
| Clitoria | Fabaceae | Fabales | 2 | 152–152 kb | cemA-psaI (84.7) | 260 | 105 | View |
| Clivia | Amaryllidaceae | Asparagales | 7 | 157–159 kb | rps19-psbA (72.2) | 271 | 110 | View |
| Cnidium | Apiaceae | Apiales | 2 | 147–151 kb | trnL-CAA-ycf2 (80.8) | 263 | 100 | View |
| Cnidoscolus | Euphorbiaceae | Malpighiales | 2 | 159–159 kb | rpl2-trnH-GUG (84.8) | 267 | 95 | View |
| Coccinia | Cucurbitaceae | Cucurbitales | 2 | 122–157 kb | trnK-rps16 (67.9) | 206 | 95 | View |
| Cochlearia | Brassicaceae | Brassicales | 4 | 155–155 kb | rpl32-trnL (82.2) | 261 | 85 | View |
| Codium | Codiaceae | Bryopsidales | 4 | 79–92 kb | orf276 (84.1) | 217 | 70 | View |
| Codonopsis | Campanulaceae | Asterales | 9 | 169–172 kb | rpl36-rps8 (85.3) | 272 | 80 | View |
| Coelastrum | Scenedesmaceae | Sphaeropleales | 5 | 170–299 kb | rbcL (83.9) | 228 | 95 | View |
| Coelogyne | Orchidaceae | Asparagales | 52 | 157–160 kb | psaC-ndhE (87.6) | 276 | 95 | View |
| Coffea | Rubiaceae | Gentianales | 11 | 155–155 kb | trnH-GUG-psbA (69.1) | 268 | 110 | View |
| Coix | Poaceae | Poales | 4 | 141–141 kb | trnG-GCC (55.8) | 309 | 80 | View |
| Cojoba | Fabaceae | Fabales | 2 | 178–179 kb | trnK-UUU-rps16 (83.7) | 284 | 95 | View |
| Coleochaete | Coleochaetaceae | Coleochaetales | 2 | 107–111 kb | rpl32-tRNA-Pro (80.2) | 239 | 70 | View |
| Coleus | Lamiaceae | Lamiales | 4 | 152–153 kb | ndhD-psaC (76.2) | 272 | 100 | View |
| Collabium | Orchidaceae | Asparagales | 2 | 158–158 kb | rpl32-trnL-UAG (82.7) | 279 | 85 | View |
| Collinsonia | Lamiaceae | Lamiales | 3 | 153–153 kb | trnT-UGU-trnL-UAA (68.8) | 267 | 90 | View |
| Colobanthus | Caryophyllaceae | Caryophyllales | 7 | 151–151 kb | psbT-psbN (84.9) | 265 | 95 | View |
| Colocasia | Araceae | Alismatales | 4 | 162–163 kb | trnH-psbA (67.5) | 269 | 90 | View |
| Colquhounia | Lamiaceae | Lamiales | 5 | 152–153 kb | rps16-trnQ(UUG) (70.7) | 274 | 75 | View |
| Coluria | Rosaceae | Rosales | 2 | 155–156 kb | trnK-UUU-rps16 (81.9) | 268 | 105 | View |
| Comastoma | Gentianaceae | Gentianales | 2 | 151–152 kb | trnH-GUG-psbA (81.7) | 269 | 100 | View |
| Combretum | Combretaceae | Myrtales | 2 | 154–159 kb | JXY33_pgt021-JXY33_pgt022 (85.7) | 277 | 100 | View |
| Commelina | Commelinaceae | Commelinales | 3 | 160–161 kb | rpl32-trnL-UAG (71.9) | 274 | 100 | View |
