Pi
0.0305
MarkerSeek score
70.20
Primer available
yes
Label
petN-psbM
Feature Metadata
Pi Curve
Alignment Viewer
1
Salvia_aethiopis_1 AAGTACTACTAATTGAGTTCAGGAATCAAACCCGTTTGTTTTATAGATCGTTCTGCAACGCATTTTGAACTATTAAAAAGCAAAACTCTGAATTTGGAAT
Salvia_amarissima_2 AAGTACTACTAATTGAGTTCAGGAACCAAACCCGCTTGTTTTATAGATCGTTCTGCAACGCATTTTGAATTATTTAAAATAAAA----TGAATTTGGAAT
Salvia_chinensis_3 AAGTACTACTAATTGAGTTCAGGAATCAAACCCGCTTGTTTTATAGATCGTTCTGCAACGCACTTTGGACTATTTAAAATCAAAACTCTGAATTTGGAAT
Salvia_dorrii_4 AAGTACTACTAATTGAGTTCAGGAATCAAACCCGCTTGTTTTATAGATCGTTCTGCAACGCATTTTGAACTATTTAAAATAAAA----TGAATTTGGAAT
Salvia_eremostachya_5 AAGTACTACTAATTGAGTTCAGGAATCAAACCCGCTTGTTTTATAGATCGTTCTGCAACGCATTTTTAACTATTTAAAATAAAA----TGAATTTGGAAT
Salvia_fruticosa_6 AAGTACTACTAATTGAGTTCAGGAATCAAACCCGCTTGTTTTATAGATCGTTCGGCAACGCATTTTGAACTATTAAAAATCAAAACTCTGAATTTGGAAT
Salvia_huberi_7 AAGTACTACTAATTGAGTTCAGGAATCAAACCCGCTTGTTTTATAGATCGTTCGGCAACGCATTTTGAACTATTAAAAATCAAAACTCTGAATTTGGAAT
Salvia_kronenburgii_8 AAGTACTACTAATTGAGTTCAGGAATCAAACCCGCTTGTTTTATAGATCGTTCGGCAACGCATTTTGAACTATTAAAAATCAAAACTCTGAATTTGGAAT
Salvia_limbata_9 AAGTACTACTAATTGAGTTCAGGAATCAAACCCGTTTGTTTTATAGATCGTTCTGCAACGCATTTTGAACTATTAAAAAGCAAAACTCTGAATTTGGAAT
Salvia_mohavensis_10 AAGTACTACTAATTGAGTTCAGGAATCAAACCCGCTTGTTTTATAGATCGTTCTGCAACGCATTTTGAACTATTTAAAATAAAA----TGAATTTGGAAT
Salvia_officinalis_subsp AAGTACTACTAATTGAGTTCAGGAATCAAACCCGCTTGTTTTATAGATCGTTCGGCAACGCATTTTGAACTATTAAAAATCAAAACTCTGAATTTGGAAT
Salvia_pachyphylla_12 AAGTACTACTAATTGAGTTCAGGAATCAAACCCGCTTGTTTTATAGATCGTTCTGCAACGCATTTTGAACTATTTAAAATAAAA----TGAATTTGGAAT
Salvia_pratensis_13 AAGTACTACTAATTGAGTTCAGGAATCAAACCCGCTTGTTTTATAGATCGTTCTGCAACGCATTTTGAACTATTAAAAAGCAAAACTCTGAATTTGGAAT
Salvia_saccardiana_14 AAGTACTACTAATTGAGTTCAGGAATCAAACCCGCTTGTTTTATAGATCGTTCTGCAACGCATTTTGAACTATTAAAAAGCAAAACTCTGAATTTGGAAT
Salvia_sonomensis_15 AAGTACTACTAATTGAGTTCAGGAATCAAACCCGCTTGTTTTATAGATCGTTCTGCAACGCATTTTGAACTATTTAAAATAAAA----TGAATTTGGAAT
Salvia_spathacea_16 AAGTACTACTAATTGAGTTCAGGAATCAAACCCGCTTGTTTTATAGATCGTTCTGCAACGCATTTTGAACTATTTAAAATAAAA----TGAATTTGGAAT
Salvia_verbenaca_17 AAGTACTACTAATTGAATTCAGGAATCAAACCCGCTTGTTTTATAGATCGTTCTGCAACGCATTTTGAACTATTAAAAAGCAAAACTCTGAATTTGGAAT
Salvia_xanthocheila_18 AAGTACTACTAATTGAGTTCAGGAATCAAACCCGTTTGTTTTATAGATCGTTCTGCAACGCATTTTGAACTATTAAAAAGCAAAACTCTGAATTTGGAAT
101
Salvia_aethiopis_1 CCAATGGGATTCCAATGGAGTAATCTATGATAGGAATCATACTCTTTCAATCCAAGAGATATTTCTCCCGTCTTTGTACTTCGAAAAGAAAGGGATTCAG
Salvia_amarissima_2 TCCATTGGATTCCAATGGAGTAATCTATGATAGGAATCATACTCTTTCAATCCAAGAGATATTTCTCCCGTCTTTGGACTTCGAAAAGAAAGGGATTCAG
Salvia_chinensis_3 CCCATTGGATTCCAATGGAGTAATCTATGATAGGAATCATACTCTTTCAATCCAAGAGATATTTCTCCCGTCTTTGTACTTCGAAAAGAAAGGGATTCAG
Salvia_dorrii_4 CCCATTGGATTCCAATGGAGTAATCTATGATAGGAATCATACTCTTTCAATCCAAGAGATATTTCTCCCGTCTTTGTACTTCGAAAAGAAAGGGATTCAG
Salvia_eremostachya_5 CCCATTGGATTCCAATGGAGTAATCTATGATAGGAATCATACTCTTTCAATCCAAAAGATATTTCTCCCGTCTTTGTACTTCGAAAAGAAAGGGATTCAG
Salvia_fruticosa_6 CCCATTGGATTCCAATGGAGTAATCTATGATAGGAATCATACTCTTTCAATCCAAGAGATATTTCTCCCGTCTTTGTACTTCGAAAAGAAAGGGATTCAG
Salvia_huberi_7 CCCATTGGATTCCAATGGAGTAATCTATGATAGGAATCATACTCTTTCAATCCAAGAGATATTTCTCCCGTCTTTGTACTTCGAAAAGAAAGGGATTCAG
Salvia_kronenburgii_8 CCCATTGGATTCCAATGGAGTAATCTATGATAGGAATCATACTCTTTCAATCCAAGAGATATTTCTCCCGTCTTTGTACTTCGAAAAGAAAGGGATTCAG
Salvia_limbata_9 CCAATGGGATTCCAATGGAGTAATCTATGATAGGAATCATACTCTTTCAATCCAAGAGATATTTCTCCCGTCTTTGTACTTCGAAAAGAAAGGGATTCAG
Salvia_mohavensis_10 CCCATTGGATTCCAATGGAGTAATCTATGATAGGAATCATACTCTTTCAATCCAAGAGATATTTCTCCCGTCTTTGTACTTCGAAAAGAAAGGGATTCAG
Salvia_officinalis_subsp CCCATTGGATTCCAATGGAGTAATCTATGATAGGAATCATACTCTTTCAATCCAAGAGATATTTCTCCCGTCTTTGTACTTCGAAAAGAAAGGGATTCAG
Salvia_pachyphylla_12 CCCATTGGATTCCAATGGAGTAATCTATGATAGGAATCATACTCTTTCAATCCAAGAGATATTTCTCCCGTCTTTGTACTTCGAAAAGAAAGGGATTCAG
Salvia_pratensis_13 CCAATGGGATTCCAATGGAGTAATCTATGATAGGAATCATACTCTTTCAATCCAAGAGATATTTCTCCCGTCTTTGTACTTCGAAAAGAAAGGGATTCAG
Salvia_saccardiana_14 CCAATGGGATTCCAATGGAGTAATCTATGATAGGAATCATACTCTTTCAATCCAAGAGATATTTCTCCCGTCTTTGTACTTCGAAAAGAAAGGGATTCAG
Salvia_sonomensis_15 CCCATTGGATTCCAATGGAGTAATCTATGATAGGAATCATACTCTTTCAATCCAAGAGATATTTCTCCCGTCTTTGTACTTCGAAAAGAAAGGGATTCAG
Salvia_spathacea_16 CCCATTGGATTCCAATGGAGTAATCTATGATAGGAATCATACTCTTTCAATCCAAGAGATATTTCTCCCGTCTTTGTACTTCGAAAAGAAAGGGATTCAG
Salvia_verbenaca_17 CCAATGGGATTCCAATGGAGTAATCTATGACAAGAATCATACTCTTTCAATCCAAGAGATATTTCTCCCGTCTTTGTACTTCGAAAAGAAAGGGATTCAG
Salvia_xanthocheila_18 CCAATGGGATTCCAATGGAGTAATCTATGATAGGAATCATACTCTTTCAATCCAAGAGATATTTCTCCCGTCTTTGTACTTCGAAAAGAAAGGGATTCAG
201
Salvia_aethiopis_1 ATGATTCGAAATTGATTCCAACCTAAAATTCTTCCGAAATTTGATATTTCAATCAATGGAAGG-GGGCTCTTACTATCTTTATAGATGGATACTAAGGAA
Salvia_amarissima_2 ATGATTGGAAATTTATTCCAACCTAAAATTCTTCCGAAATTTTCTATTTCAATCAACGGGCAT-GGGCTCTTACTATCTTTATAGGCGGATACTAAGGAA
Salvia_chinensis_3 ATGATTGGAAATTTATTCCAACCTAAAATTCTTCCGAAATTTTCTATTTCAATCAATGGGAATGGGGCTCTTACTATCTTTATAGACGGATACTAAGGAA
Salvia_dorrii_4 ATGATTGGAAATTTATTCCAACCTAAAATTCTTCCGAATTTTTCTATTTCAATCAACGGGAAT-GGGCTCTTACTATCTTTATAGACGGATACTAAGGAA
Salvia_eremostachya_5 ATGATTGGAAATTTATTCCAACCTCAAATTCTTCCGAATTTTTCTATTTCAATCAACGGGAAT-GGGCTCTTACTATCTTTATAGACGGATACTAAGGAA
Salvia_fruticosa_6 ATGATTCGAAATTGATTCCAA------------------------------------GGGAGT-GGGCTCTTACTATCTTTATAGATGGATACTAAGGAA
Salvia_huberi_7 ATGATTCGAAATTGATTCCAA------------------------------------GGGAGT-GGGCTCTTACTATCTTTATAGATGGATACTAAGGAA
Salvia_kronenburgii_8 ATGATTCGAAATTGATTCCAA------------------------------------GGGAGT-GGGCTCTTACTATCTTTATAGATGGATACTAAGGAA
Salvia_limbata_9 ATGATTCGAAATTGATTCCAACCTAAAATTCTTCCGAAATTTGATATTTCAATCAATGGAAGG-GGGCTCTTACTATCTTTATAGATGGATACTAAGGAA
Salvia_mohavensis_10 ATGATTGGAAATTTATTCCAACCTAAAATTCTTCCGAATTTTTCTATTTCAATCAACGGGAAT-GGGCTCTTACTATCTTTATAGACGGATACTAAGGAA
Salvia_officinalis_subsp ATGATTCGAAATTGATTCCAA------------------------------------GGGAGT-GGGCTCTTACTATCTTTATAGATGGATACTAAGGAA
Salvia_pachyphylla_12 ATGATTGGAAATTTATTCCAACCTAAAATTCTTCCGAATTTTTCTATTTCAATCAACGGGAAT-GGGCTCTTACTATCTTTATAGACGGATACTAAGGAA
Salvia_pratensis_13 ATGATTCGAAATTGATTCCAACCTAAAATTCTTCCGAAATTTGATATTTCAATCAATGGAAGG-GGGCTCTTACTATCTTTATAGATGGATACTAAGGAA
Salvia_saccardiana_14 ATGATTCGAAATTGATTCCAACCTAAAATTCTTCCGAAATTTGATATTTCAATCAATGGAAGG-GGGCTCTTACTATCTTTATAGATGGATACTAAGGAA
Salvia_sonomensis_15 ATGATTGGAAATTTATTCCAACCTAAAATTCTTCCGAATTTTTCTATTTCAATCAACGGGAAT-GGGCTCTTACTATCTTTATAGACGGATACTAAGGAA
Salvia_spathacea_16 ATGATTGGAAATTTATTCCAACCTAAAATTCTTCCGAATTTTTCTATTTCAATCAACGGGAAT-GGGCTCTTACTATCTTTATAGACGGATACTAAGGAA
Salvia_verbenaca_17 ATGATTCGAAATTGATTCCAACCTAAAATTCTTCCGAAATTTGATATTTCAATCAATGGAAGG-GGGCTCTTACTATCTTTATAGATGGATACTAAGGAA
Salvia_xanthocheila_18 ATGATTCGAAATTGATTCCAACCTAAAATTCTTCCGAAATTTGATATTTCAATCAATGGAAGG-GGGCTCTTACTATCTTTATAGATGGATACTAAGGAA
301
Salvia_aethiopis_1 GTTTTTC-TTTTTTATTTATTTCCCTCTTGACTCTTCAAAAAAGAAGTTGTTTTGTTAAGCGTATACGCACTTTTTATAAGTAAT------GATATAGTG
Salvia_amarissima_2 GTTTTTC--TTTTTTTTTATTTCCCTCTTGACTCTTCAAAAAAGAAGTCGGTTTGTTAAGCGTATCCGCAC-TTCTATAAGAAATGATATAGAGATAGTG
Salvia_chinensis_3 GTTTTTCTTTTTTTATTTATTTCCCTCTTGACTCTTCAAAAAAGAAGTCGTTTTGTTAAGCGTATACACACTTTCTATAAGAAATGATATCGAGATCGTG
Salvia_dorrii_4 GTTTTTCTTTTTTTATTTATTTCCCTCTTGACTCTTCAAAAAAGAAGTCGTTTTGTTAAGCGTTTCCGCACTTTCTATAAGAAATGATATAGAGATAGTG
Salvia_eremostachya_5 GTTTTTCTTTTTTTATTTATTTCCCTCTTGACTCTTCAAAAAATAAGTCGTTTTGTTAAGCGTTTCCGCACTTTCTATAAGAAATGATATAGAGATAGTG
Salvia_fruticosa_6 G-TTTTC-TTTTTTATTTATTTCCCTCTTGACTCTTCAAAAAAGAAGTTGTTTTGTTAAGCGTATACGCACTTTCTATAAGAAAT------GATATAGTG
Salvia_huberi_7 G-TTTTC-TTTTTTATTTATTTCCCTCTTGACTCTTCAAAAAAGAAGTTGTTTTGTTAAGCGTATACGCACTTTCTATAAGAAATGATATAGATATAGTG
Salvia_kronenburgii_8 G-TTTTC-TTTTTTATTTATTTCCCTCTTGACTCTTCAAAAAAGAAGTTGTTTTGTTAAGCGTATACGCACTTTCTATAAGAAATGATATAGATATAGTG
Salvia_limbata_9 GTTTTTC-TTTTTTATTTATTTCCCTCTTGACTCTTCAAAAAAGAAGTTGTTTTGTTAAGCGTATACGCACTTTTTATAAGTAAT------GATATAGTG
Salvia_mohavensis_10 GTTTTTCTTTTTTTATTTATTTCCCTCTTGACTCTTCAAAAAAGAAGTCGTTTTGTTAAGCGTTTCCGCACTTTCTATAAGAAATGATATAGAGATAGTG
Salvia_officinalis_subsp G-TTTTC-TTTTTTATTTATTTCCCTCTTGACTCTTCAAAAAAGAAGTTGTTTTGTTAAGCGTATACGCACTTTCTATAAGAAATGATATAGATATAGTG
Salvia_pachyphylla_12 GTTTTTCTTTTTTTATTTATTTCCCTCTTGACTCTTCAAAAAAGAAGTCGTTTTGTTAAGCGTTTCCGCACTTTCTATAAGAAATGATATAGAGATAGTG
Salvia_pratensis_13 GTTTTTC-TTTTTTATTTATTTCCCTCTTGACTCTTCAAAAAAGAAGTTGTTTTGTTAAGCGTATACGCACTTTCTATAAGTAAT------GATATAGTG
Salvia_saccardiana_14 GTTTTTC-TTTTTTATTTATTTCCCTCTTGACTCTTCAAAAAAGAAGTTGTTTTGTTAAGCGTATACGCACTTTCTATAAGTAAT------GATATAGTG
Salvia_sonomensis_15 GTTTTTCTTTTTTTATTTATTTCCCTCTTGACTCTTCAAAAAAGAAGTCGTTTTGTTAAGCGTTTCCGCACTTTCTATAAGAAATGATATAGAGATAGTG
Salvia_spathacea_16 GTTTTTCTTTTTTTATTTATTTCCCTCTTGACTCTTCAAAAAAGAAGTCGTTTTGTTAAGCGTTTCCGCACTTTCTATAAGAAATGATATAGAGATAGTG
Salvia_verbenaca_17 ATTTTTC-TTTTTTATTTATTTCCCTCTTGACTCTTGAAAAAAGAAGTTGTTTTGTTAAGCGTATACGCACTTTCTATAAGTAAT------GATATAGTG
Salvia_xanthocheila_18 GTTTTTC-TTTTTTATTTATTTCCCTCTTGACTCTTCAAAAAAGAAGTTGTTTTGTTAAGCGTATACGCACTTTTTATAAGTAAT------GATATAGTG
401
Salvia_aethiopis_1 GTTGTTTAAGGAGAGACTGGGCAATAATAAGATCTTGCCTCGGGCGAGTTACATATCGGGCATTTACCCTTTTGTTTCTATTCTAATTTTAGAAAGGCGG
Salvia_amarissima_2 GTTGTTTAAGGAGAGACTGGGCAATAATAAGATCTTGCCTCGGGCGGGTTACATATCGGGCATTTACCCTTTGGTTTCTATTCTAATTTTAGAAAGGCGG
Salvia_chinensis_3 GTTGTTTAAGGAGAGACTGGTCAATAATAAGATCTTGCCTCGGGCGGGTTACATATCGGGCATTTACCCTTTGGTTTCTATTCGAATTTTAGAAAGGCGG
Salvia_dorrii_4 GTTGTTTAAGGAGAGACTGGGCAATAATAAGATCTTGCCTCGGGCGGGTTACATATCGGGCATTTACCCTTTGGTTTCTATTCTAATTTTAGAAAGGCGG
Salvia_eremostachya_5 GTTGTTTAAGGAGAGACTGGGCAATAATAAGATCTTGCCTCGGGCGGGTTACATATCGGGCATTTACCCTTTGGTTTCTATTCTAATTTTAGAAAGGCGG
Salvia_fruticosa_6 GTTGTTTAAGGAGAGACTGGGCAATAATAAGATCTTGCCTCGGGCGAATTACATATCGGGCATTTACCCTTTGGTTTCTATTCTAATTTTAGAAAGTCGG
Salvia_huberi_7 GTTGTTTAAGGAGAGACTGGGCAATAATAAGATCTTGCCTCGGGCGAATTACATATCGGGCATTTACCCTTTGGTTTCTATTCTAATTTTAGAAAGTCGG
Salvia_kronenburgii_8 GTTGTTTAAGGAGAGACTGGGCAATAATAAGATCTTGCCTCGGGCGAATTACATATCGGGCATTTACCCTTTGGTTTCTATTCTAATTTTAGAAAGTCGG
Salvia_limbata_9 GTTGTTTAAGGAGAGACTGGGCAATAATAAGATCTTGCCTCGGGCGAGTTACATATCGGGCATTTACCCTTTTGTTTCTATTCTAATTTTAGAAAGGCGG
Salvia_mohavensis_10 GTTGTTTAAGGAGAGACTGGGCAATAATAAGATCTTGCCTCGGGCGGGTTACATATCGGGCATTTACCCTTTGGTTTCTATTCTAATTTTAGAAAGGCGG
Salvia_officinalis_subsp GTTGTTTAAGGAGAGACTGGGCAATAATAAGATCTTGCCTCGGGCGAATTACATATCGGGCATTTACCCTTTGGTTTCTATTCTAATTTTAGAAAGTCGG
Salvia_pachyphylla_12 GTTGTTTAAGGAGAGACTGGGCAATAATAAGATCTTGCCTCGGGCGGGTTACATATCGGGCATTTACCCTTTGGTTTCTATTCTAATTTTAGAAAGGCGG
Salvia_pratensis_13 GTTGTTTAAGGAGAGACTGGGCAATAATAAGATCTTGCCTCGGGCGAGTTACATATCGGGCATTTACCCTTTTGTTTCTATTCTAATTTTAGAAAGGTGG
Salvia_saccardiana_14 GTTGTTTAAGGAGAGACTGGGCAATAATAAGATCTTGCCTCGGGCGAGTTACATATCGGGCATTTACCCTTTTGTTTCTATTCTAATTTTAGAAAGGTGG
Salvia_sonomensis_15 GTTGTTTAAGGAGAGACTGGGCAATAATAAGATCTTGCCTCGGGCGGGTTACATATCGGGCATTTACCCTTTGGTTTCTATTCTAATTTTAGAAAGGCGG
Salvia_spathacea_16 GTTGTTTAAGGAGAGACTGGGCAATAATAAGATCTTGCCTCGGGCGGGTTACATATCGGGCATTTACCCTTTGGTTTCTATTCTAATTTTAGAAAGGCGG
Salvia_verbenaca_17 GTTGTTTAAGGAGAGACTGGGCAATAATAAGATCTTGCCTCGGGCGAGTTACATATCGGGCATTTACCCTTTTGTTTCTATTCTAATTTTAGAAAGGCGG
Salvia_xanthocheila_18 GTTGTTTAAGGAGAGACTGGGCAATAATAAGATCTTGCCTCGGGCGAGTTACATATCGGGCATTTACCCTTTTGTTTCTATTCTAATTTTAGAAAGGCGG
501
Salvia_aethiopis_1 TTTATGCTTTATCGCTTTATTTGATATGGCGTTAAAAATAGGTGAGGTTTCCCCTTACTTATTAGTA-----AGGGGAATTAGAATCCTAAAATAAGAAT
Salvia_amarissima_2 TTTATACTTTATCGCCTTATTTCATATGGCGTTAAAAATAGGCGAGGTTTCCCCTTCCTTATTAGGAAAAGGAAAGGAATTAGAATCCTAAAATAAGAAT
Salvia_chinensis_3 TTTAGGCTTTATCACCTTATTTCATATGGCGTTAAAAATAGGCGAGGTTTCCCCTTACTTATTAGTAAAAGGAAAGGAATTAGAATCCTAAAATAAGAAT
Salvia_dorrii_4 TTTATGCTTTATCGCCTTATTTCATATGGCGTTAAAAATAGGCGAGGTTTCCCCTTCCGTATTAGTAAAAGGAAAGGAATTAGAATCCTAAAATAAGAAT
Salvia_eremostachya_5 TTTATGCTTTATCGCCTTATTTCATATGGCGTTAAAAATAGGCGAGGTTTCCCCTTCCGTATTAGTAAAAGGAAAGGAATTAGAATCCTAAAATAAGAAT
Salvia_fruticosa_6 TTTAT--------GCTTTATTTGATATGGCGTTAAAAATAGGTGAGGTTTCCCCTTACTTATTAGTA-----AGGGGAATTAGAATCCTAAAATAAGAAT
Salvia_huberi_7 TTTAT--------GCTTTATTTGATATGGCGTTAAAAATAGGTGAGGTTTCCCCTTACTTATTAGTA-----AGGGGAATTAGAATCCTAAAATAAGAAT
Salvia_kronenburgii_8 TTTAT--------GCTTTATTTGATATGGCGTTAAAAATAGGTGAGGTTTCCCCTTACTTATTAGTA-----AGGGGAATTAGAATCCTAAAATAAGAAT
Salvia_limbata_9 TTTATGCTTTATCGCTTTATTTGATATGGCGTTAAAAATAGGTGAGGTTTCCCCTTACTTATTAGTA-----AGGGGAATTAG------------AGAAT
Salvia_mohavensis_10 TTTATGCTTTATCGCCTTATTTCATATGGCGTTAAAAATAGGCGAGGTTTCCCCTTCCGTATTAGTAAAAGGAAAGGAATTAGAATCCTAAAATAAGAAT
Salvia_officinalis_subsp TTTAT--------GCTTTATTTGATATGGCGTTAAAAATAGGTGAGGTTTCCCCTTACTTATTAGTA-----AGGGGAATTAGAATCCTAAAATAAGAAT
Salvia_pachyphylla_12 TTTATGCTTTATCGCCTTATTTCATATGGCGTTAAAAATAGGCGAGGTTTCCCCTTCCGTATTAGTAAAAGGAAAGGAATTAGAATTCTAAAATAAGAAT
Salvia_pratensis_13 TTTATGCTTTATCGCTTTATTTGATATAGCGTTAAAAATAGGTGAGGTTTCCCCTTACTTATTAGTA-----AGGGGAATTAGAATCCTAAAATAAGAAT
Salvia_saccardiana_14 TTTATGCTTTATCGCTTTATTTGATATAGCGTTAAAAATAGGTGAGGTTTCCCCTTACTTATTAGTA-----AGGGGAATTAGAATCCTAAAATAAGAAT
Salvia_sonomensis_15 TTTATGCTTTATCGCCTTATTTCATATGGCGTTAAAAATAGGCGAGGTTTCCCCTTCCGTATTAGTAAAAGGAAAGGAATTAGAATTCTAAAATAAGAAT
Salvia_spathacea_16 TTTATGCTTTATCGCCTTATTTCATATGGCGTTAAAAATAGGCGAGGTTTCCCCTTCCGTATTAGTAAAAGGAAAGGAATTAGAATCCTAAAATAAGAAT
Salvia_verbenaca_17 TTTAT--------GCTTTATTTGATATGGCGTTAAAAATAGGTGAGGTTTCCCCTTACTTATTAGTA-----AGGGGAATTAGAATCCTAAAATAAGAAT
Salvia_xanthocheila_18 TTTATGCTTTATCGCTTTATTTGATATGGCGTTAAAAATAGGTGAGGTTTCCCCTTACTTATTAGTA-----AGGGGAATTAGAATCCTAAAATAAGAAT
601
Salvia_aethiopis_1 TATTTCAGATTGAGCGGAACAAATAGATGTAGCAAATGGGGTCTTATGTCAATTCCATAGAATATATTGATATGGAAATGGAATTAATATACACAT-TAG
Salvia_amarissima_2 TATTTCAGATTGAGCGGAACAAATAGATGTAGCAAATTTGGTCTTATGTCAATTCCATAGAATATATTGATATGGAAATGGAATTAATATACACATATAG
Salvia_chinensis_3 TATTTTAGATTGAGCGGAACAAATAGATGTAGCAAATTGGGTCTTATGTCAATTCCATAAAATATATTGATATGGAAATGGAATTAATATACACATATAG
Salvia_dorrii_4 TATTTCAGATTGAGGGGAACAAATAGATGTAGCAAATTGGGTCTTATGTCAATTCCATAGAATATATTGATATGGAAATGGAATTAATATACACATATAG
Salvia_eremostachya_5 TATTTCAGATTGAGGGGAACAAATAGATGTAGCAAATTGGGTCTTATGTCAATTCCATAGAATATATTGATATGGAAATGGAATTAATATACACATATAG
Salvia_fruticosa_6 TATTTCAGATTGAGCGGAACAAATAGATGTAGCAAATTGGGTCTTATGTCAATTCCATAGAATATATTGATATGGAAATGGAATTAATATACACAT-TAG
Salvia_huberi_7 TATTTCAGATTGAGCGGAACAAATAGATGTAGCAAATTGGGTCTTATGTCAATTCCATAGAATATATTGATATGGAAATGGAATTAATATACACAT-TAG
Salvia_kronenburgii_8 TATTTCAGATTGAGCGGAACAAATAGATGTAGCAAATTGGGTCTTATGTCAATTCCATAGAATATATTGATATGGAAATGGAATTAATATACACAT-TAG
Salvia_limbata_9 TATTTCAGATTGAGCGGAACAAATAGATGTAGCAAATGGGGTCTTATGTCAATTCCATAGAATATATTGATATGGAAATGGAATTAATATACACATTTAG
Salvia_mohavensis_10 TATTTCAGATTGAGGGGAACAAATAGATGTAGCAAATTGGGTCTTATGTCAATTCCATAGAATATATTGATATGGAAATGGAATTAATATACACATATAG
Salvia_officinalis_subsp TATTTCAGATTGAGCGGAACAAATAGATGTAGCAAATTGGGTCTTATGTCAATTCCATAGAATATATTGATATGGAAATGGAATTAATATACACAT-TAG
Salvia_pachyphylla_12 TATTTCAGATTGAGGGGAACAAATAGATGTAGCAAATTGGGTCTTATGTCAATTCCATAGAATATATTGATATGGAAATGGAATTAATATACACATATAG
Salvia_pratensis_13 TATTTCAGATTGAGCGGAACAAATAGATGTAGCAAATTGGGTCTTATGTCAATTCCATAGAATATATTGATATGGAAATGGAATTAATATACACATTTAG
Salvia_saccardiana_14 TATTTCAGATTGAGCGGAACAAATAGATGTAGCAAATTGGGTCTTATGTCAATTCCATAGAATATATTGATATGGAAATGGAATTAATATACACATTTAG
Salvia_sonomensis_15 TATTTCAGATTGAGGGGAACAAATAGATGTAGCAAATTGGGTCTTATGTCAATTCCATAGAATATATTGATATGGAAATGGAATTAATATACACATATAG
Salvia_spathacea_16 TATTTCAGATTGAGGGGAACAAATAGATGTAGCAAATTGGGTCTTATGTCAATTCCATAGAATATATTGATATGGAAATGGAATTAATATACACATATAG
Salvia_verbenaca_17 TATTTCAGATTGAGCGGAACAAATAGATGTAGCAAATTGGGTCTTATGTCAATTCCATAGAATATATTGATATGGAAATGGAATTAATATACACATTTAG
Salvia_xanthocheila_18 TATTTCAGATTGAGCGGAACAAATAGATGTAGCAAATGGGGTCTTATGTCAATTCCATAGAATATATTGATATGGAAATGGAATTAATATACACATTTAG
701
Salvia_aethiopis_1 GAAGAGAATATTGTAGATTGATATATAGAAACTTAAGCGTTTATCTTTATTCTAGATTACAACTTTATAGACTAAGAGATAGATAGTATGGTAGAAAATT
Salvia_amarissima_2 GAAGAGAATATTGCAGATTGATATATAGAAACTTAAGCGTTTATCTTTATTCTAGATTACAGCTTTATAGACTAAGAGATAGATAGTATGGTAGAAAAAT
Salvia_chinensis_3 GAAGAGAATATTGTAGATTGATATATAGAAACTTAAGCGTTTATCTTTATTCTAGATTACAGCTTTATAGACTAAGAGATAGATAGTATGGTAGAAAAAT
Salvia_dorrii_4 GAAGAGAATATTGTAGGTTGATATATAGAAACTTAAGCGTTTATCTTTATTCTAGATTACAGCTTTATAGACTAAGAGATAGATAGTATGGTAGAAAAAT
Salvia_eremostachya_5 GAAGAGAATATTGTAGGTTGATATATAGAAACTTAAGCGTTTATCTTTATTCTAGATTACAGCTTTATAGACTAAGAGATAGATAGTATGGTAGAAAAAT
Salvia_fruticosa_6 GAAGAGAATATTGTAGATTGATATATAGAAACTTAAGCGTTTATCTTTATTCTAGATTACAACTTTATAGACTAAGAGATAGATAGTATGGTAGAAAATT
Salvia_huberi_7 GAAGAGAATATTGTAGATTGATATATAGAAACTTAAGCGTTTATCTTTATTCTAGATTACAACTTTATAGACTAAGAGATAGATAGTATGGTAGAAAAAT
Salvia_kronenburgii_8 GAAGAGAATATTGTAGATTGATATATAGAAACTTAAGCGTTTATCTTTATTCTAGATTACAACTTTATAGACTAAGAGATAGATAGTATGGTAGAAAAAT
Salvia_limbata_9 GAAGAGAATATTGTAGATTGATATATAGAAACTTAAGCGTTTATCTTTATTCTAGATTACAACTTTATAGACTAAGAGATAGATAGTATGGTAGAAAATT
Salvia_mohavensis_10 GAAGAGAATATTGTAGGTTGATATATAGAAACTTAAGCGTTTATCTTTATTCTAGATTACAGCTTTATAGACTAAGAGATAGATAGTATGGTAGAAAAAT
Salvia_officinalis_subsp GAAGAGAATATTGTAGATTGATATATAGAAACTTAAGCGTTTATCTTTATTCTAGATTACAACTTTATAGACTAAGAGATAGATAGTATGGTAGAAAAAT
Salvia_pachyphylla_12 GAAGAGAATATTGTAGGTTGATATATAGAAACTTAAGCGTTTATCTTTATTCTAGATTACAGCTTTATAGACTAAGAGATAGATAGTATGGTAGAAAAAT
Salvia_pratensis_13 GAAGAGAATATTGTAGATTGATATATAGAAACTTAAGCGTTTATCTTTATTCTAGATTACAACTTTATAGACTAAGAGATAGATAGTATGGTAGAAAATT
Salvia_saccardiana_14 GAAGAGAATATTGTAGATTGATATATAGAAACTTAAGCGTTTATCTTTATTCTAGATTACAACTTTATAGACTAAGAGATAGATAGTATGGTAGAAAATT
Salvia_sonomensis_15 GAAGAGAATATTGTAGGTTGATATATAGAAACTTAAGCGTTTATCTTTATTCTAGATTACAGCTTTATAGACTAAGAGATAGATAGTATGGTAGAAAAAT
Salvia_spathacea_16 GAAGAGAATATTGTAGGTTGATATATAGAAACTTAAGCGTTTATCTTTATTCTAGATTACAGCTTTATAGACTAAGAGATAGATAGTATGGTAGAAAAAT
Salvia_verbenaca_17 GAAGAGAATATTGTAGATTGATATATAGAAACTTAAGCGTTTATCTTTATTCTAGATTACAACTTTATAGACTAAGAGATAGATAGTATGGTAGAAAATT
Salvia_xanthocheila_18 GAAGAGAATATTGTAGATTGATATATAGAAACTTAAGCGTTTATCTTTATTCTAGATTACAACTTTATAGACTAAGAGATAGATAGTATGGTAGAAAATT
801
Salvia_aethiopis_1 C-ATTTTTCTACCATACTATCTATCTCTTAGATAATTTCCGATTATAGTGCGCTCATTTCATTTAAGTTAAGACGTGAAATTGAATCCCTTTCATTTTTC
Salvia_amarissima_2 GAATTTTTCTACCATACTATCTATCTCTTAGATAATTTCCGATTATAGTGTGCTCATTTCATTTAAGTTAAGACGTGAAATTGGATCCCTTTCATTTTAC
Salvia_chinensis_3 GAATTTTTCTACCATACTATCTATCTCTTAGATAATTTCCGATTCTAGTGCGCTCATTTCATTTAAGTTAAGACGTGAAATTGGACCCCTTTCATTTTAC
Salvia_dorrii_4 GAATTTTTCTACCATACTATCTATCTCTTAGATAATTTCCGATTATAGTGTGCTCATTTCATTTAAGTTAAGACATGAAATTGGATCCCTTTCATTTTAC
Salvia_eremostachya_5 GAATTTTTCTACCATACTATCTATCTCTTAGATAATTTCCGATTATAGTGTGCTCATTTCATTTAAGTTAAGACGTGAAATTGGATCCCTTTCATTTTAC
Salvia_fruticosa_6 C-ATTTTTCTACCATACTATCTATCTCTTAGATAATTTCCGATTATAGTGCGCTCATTTCATTTAAGTTAAGACGTGAAATTGAATCCCTTTCATTTTAC
Salvia_huberi_7 G-AATTTTCTACCATACTATCTATCTCTTAGATAATTTCCGATTATAGTGCGCTCATTTCATTTAAGTTAAGACGTGAAATTGAATCCCTTTCATTTTAC
Salvia_kronenburgii_8 G-AATTTTCTACCATACTATCTATCTCTTAGATAATTTCCGATTATAGTGCGCTCATTTCATTTAAGTTAAGACGTGAAATTGAATCCCTTTCATTTTAC
Salvia_limbata_9 C-ATTTTTCTACCATACTATCTATCTCTTAGATAATTTCCGATTATAGTGCGCTCATTTCATTTAAGTTAAGACGTGAAATTGAATCCCTTTCATTTTTC
Salvia_mohavensis_10 GAATTTTTCTACCATACTATCTATCTCTTAGATAATTTCCGATTATAGTGTGCTCATTTCATTTAAGTTAAGACATGAAATTGGATCCCTTTCATTTTAC
Salvia_officinalis_subsp G-AATTTTCTACCATACTATCTATCTCTTAGATAATTTCCGATTATAGTGCGCTCATTTCATTTAAGTTAAGACGTGAAATTGAATCCCTTTCATTTTAC
Salvia_pachyphylla_12 GAATTTTTCTACCATACTATCTATCTCTTAGATAATTTCCGATTATAGTGTGCTCATTTCATTTAAGTTAAGACATGAAATTGGATCCCTTTCATTTTAC
Salvia_pratensis_13 A-ATTTTTCTACCATACTATCTATCTCTTAGATAATTTCCGATTATAGTGCGCTCATTTCATTTAAGTTAAGACGTGAAATTGAATCCCTTTCATTTTTC
Salvia_saccardiana_14 A-ATTTTTCTACCATACTATCTATCTCTTAGATAATTTCCGATTATAGTGCGCTCATTTCATTTAAGTTAAGACGTGAAATTGAATCCCTTTCATTTTTC
Salvia_sonomensis_15 TCATTTTTCTACCATACTATCTATCTCTTAGATAATTTCCGATTATAGTGTGCTCATTTCATTTAAGTTAAGACATGAAATTGGATCCCTTTCATTTTAC
Salvia_spathacea_16 GAATTTTTCTACCATACTATCTATCTCTTAGATAATTTCCGATTATAGTGTGCTCATTTCATTTAAGTTAAGACATGAAATTGGATCCCTTTCATTTTAC
Salvia_verbenaca_17 C-ATTTTTCTACCATACTATCTATCTCTTAGATAATTTCCGATTATAGTGCGCTCATTTCATTTAAGTTAAGACGTGAAATTGAATCCCTTTCATTTTTC
Salvia_xanthocheila_18 C-ATTTTTCTACCATACTATCTATCTCTTAGATAATTTCCGATTATAGTGCGCTCATTTCATTTAAGTTAAGACGTGAAATTGAATCCCTTTCATTTTTC
901
Salvia_aethiopis_1 TTCGTAAATTTTTGATAAGAACTTGGAAGGAAAGTTTGATTCAAATTCATTTGAAAATTCAATTGAA
Salvia_amarissima_2 TTCGTAAATTTTGGATAAGAACTTGGAAGGAAAGTTTGATTCAAATTCATTTGAAAATTCAATCGAA
Salvia_chinensis_3 TTCGTAAATTTTTGATAAGAACTTGGAAGGAAAGTTTGATTCAAATTCATTTGAAAATTCAATCGAA
Salvia_dorrii_4 TTCGTAAATTTTTGATAAGAACTTGGAAGGAAAGTTTCATTCAAATTCTTTTGAAAATTCAATCGAA
Salvia_eremostachya_5 TTCGTAAATTTTTGATAAGAACTTGGAAGGAAAGTTTCATTCAAATTCATTTGAAAATTCAATCGAA
Salvia_fruticosa_6 TTCGTAAATTTTTGATAAGAACTTGGAAGGAAAGTTTGATTCAAATGAATTTGAAAATTCAATTGAA
Salvia_huberi_7 TTCGTAAATTTTTGATAAGAACTTGGAAGGAAAGTTTAATTCAAATGAATTTGAAAATTCAATTGAA
Salvia_kronenburgii_8 TTCGTAAATTTTTGATAAGAACTTGGAAGGAAAGTTTGATTCAAATGAATTTGAAAATTCAATTGAA
Salvia_limbata_9 TTCGTAAATTTTTGATAAGAACTTGGAAGGAAAGTTTGATTCAAATTCATTTGAAAATTCAATTGAA
Salvia_mohavensis_10 TTCGTAAATTTTTGATAAGAACTTGGAAGGAAAGTTTCATTCAAATTCTTTTGAAAATTCAATCGAA
Salvia_officinalis_subsp TTCGTAAATTTTTGATAAGAACTTGGAAGGAAAGTTTGATTCAAATTCATTTGAAAATTCAATTGAA
Salvia_pachyphylla_12 TTCGTAAATTTTTGATAAGAACTTGGAAGGAAAGTTTCATTCAAATTCTTTTGAAAATTCAATCGAA
Salvia_pratensis_13 TTCGTAAATTTTTGATAAGAACTTGGAAGGAAAGTTTGATTCAAATTCATTTGAAAATGAAATTGAA
Salvia_saccardiana_14 TTCGTAAATTTTTGATAAGAACTTGGAAGGAAAGTTTGATTCAAATTCATTTGAAAATGAAATTGAA
Salvia_sonomensis_15 TTCGTAAATTTTTGATAAGAACTTGGAAGGAAAGTTTCATTCAAATTCTTTTGAAAATTCAATCGAA
Salvia_spathacea_16 TTCGTAAATTTTTGATAAGAACTTGGAAGGAAAGTTTCATTCAAATTCTTTTGAAAATTCAATCGAA
Salvia_verbenaca_17 TTAGTAAATTTTTGATAAGAACTTGGAAGGAAAGTTTGATTCAAATTCATTTGAAAATTCAATTGAA
Salvia_xanthocheila_18 TTCGTAAATTTTTGATAAGAACTTGGAAGGAAAGTTTGATTCAAATTCATTTGAAAATTCAATTGAA
Haplotype Network
Species Separation
Primer Ranking
| Primer ID | fwd_seq | rev_seq | fwd_gc | rev_gc | fwd_tm | rev_tm | amplicon_size | cross_species_success_rate | primer_score |
|---|---|---|---|---|---|---|---|---|---|
| petN-psbM_p1 | ACTCGTAGTGTGGGGAAGAA | GTCTTGACGACGGGTTGATT | 50.0 | 50.0 | 58.0 | 58.2 | 1249-1319 bp | 1.0 | 88.7 |
| petN-psbM_p2 | TCGTAGTGTGGGGAAGAAGT | GTCTTGACGACGGGTTGATT | 50.0 | 50.0 | 58.0 | 58.2 | 1247-1317 bp | 1.0 | 88.7 |
| petN-psbM_p3 | ACTCGTAGTGTGGGGAAGAA | TCTCCAAGGAAGACGCAAAG | 50.0 | 50.0 | 58.0 | 57.8 | 1413 bp | 0.055556 | 40.8 |
| petN-psbM_p4 | TCGTAGTGTGGGGAAGAAGT | TCTCCAAGGAAGACGCAAAG | 50.0 | 50.0 | 58.0 | 57.8 | 1411 bp | 0.055556 | 40.8 |
| petN-psbM_p5 | GTGTCGCCTGAATCCTGAAT | TCTCCAAGGAAGACGCAAAG | 50.0 | 50.0 | 58.0 | 57.8 | 1643 bp | 0.055556 | 40.6 |