feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH tRNA trnH trnH 55 129 -1 75 LSC 0.000000 0 0 1 21 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_001 igs trnH|psbA trnH-psbA 130 277 0 148 LSC 0.016731 6 0 76 26 no 0.428571 5 0.600000 0.016731 1.000000 41.300000 psbA gene psbA psbA 278 1339 -1 1062 LSC 0.001435 4 0 63 130 no 0.142857 3 0.333333 0.001435 1.000000 33.500000 IGS_002 igs psbA|trnK psbA-trnK 1340 1629 0 290 LSC 0.014450 10 1 300 61 no 0.428571 5 0.600000 0.014495 1.000000 42.600000 trnK_part1 tRNA trnK trnK 1630 1665 1 36 LSC 0.000000 0 0 4 25 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 matK gene matK matK 1930 3447 -1 1518 LSC 0.008407 33 0 9 18 no 1.000000 7 1.000000 0.008407 1.000000 50.900000 IGS_005 igs matK|trnK matK-trnK 3448 4159 0 712 LSC 0.005217 9 0 41 38 no 0.285714 4 0.500000 0.005217 1.000000 37.100000 trnK_part2 tRNA trnK trnK 4160 4197 1 38 LSC 0.000000 0 0 4 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_006 igs trnK|rps16 trnK-rps16 4198 5128 0 931 LSC 0.013963 31 42 42 182 yes 1.000000 7 1.000000 0.014056 1.000000 62.800000 rps16 gene rps16 rps16 5129 6236 -1 1108 LSC 0.005183 14 5 9 64 no 0.714286 6 0.833333 0.004912 0.999097 43.500000 IGS_007 igs rps16|trnQ rps16-trnQ 6237 7579 0 1343 LSC 0.014991 49 252 127 56 yes 1.000000 7 1.000000 0.014416 0.999255 64.600000 trnQ tRNA trnQ trnQ 7580 7651 -1 72 LSC 0.010582 2 0 7 10 no 0.142857 3 0.333333 0.010582 1.000000 30.200000 IGS_008 igs trnQ|psbK trnQ-psbK 7652 8027 0 376 LSC 0.007852 6 2 8 38 no 0.714286 6 0.833333 0.007875 1.000000 40.500000 psbK gene psbK psbK 8028 8213 1 186 LSC 0.001536 1 0 58 28 no 0.142857 2 0.500000 0.001536 1.000000 24.900000 IGS_009 igs psbK|psbI psbK-psbI 8214 8592 0 379 LSC 0.014374 13 13 147 35 no 0.714286 6 0.833333 0.014128 1.000000 51.200000 psbI gene psbI psbI 8593 8703 1 111 LSC 0.006864 2 0 3 6 no 0.142857 3 0.333333 0.006864 1.000000 27.000000 IGS_010 igs psbI|trnS psbI-trnS 8704 8807 0 104 LSC 0.014652 3 0 42 60 no 0.000000 3 0.000000 0.014652 1.000000 32.100000 trnS tRNA trnS trnS 8808 8895 -1 88 LSC 0.005411 1 0 61 13 no 0.000000 2 0.000000 0.005411 1.000000 23.600000 IGS_011 igs trnS|trnG-TCC trnS-trnG-TCC 8896 9694 0 799 LSC 0.014900 29 5 27 82 no 1.000000 7 1.000000 0.014923 1.000000 57.800000 trnG-TCC_part1 tRNA trnG-TCC trnG-TCC 9695 9716 1 22 LSC 0.000000 0 0 77 60 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 trnG-TCC_part2 tRNA trnG-TCC trnG-TCC 10392 10442 1 51 LSC 0.000000 0 1 140 23 no 0.142857 2 0.500000 0.000000 1.000000 25.500000 IGS_014 igs trnG-TCC|trnR trnG-TCC-trnR 10443 10703 0 261 LSC 0.013501 9 27 191 93 no 0.571429 5 0.800000 0.014295 0.961686 51.600000 trnR tRNA trnR trnR 10704 10775 1 72 LSC 0.000000 0 0 30 21 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 IGS_015 igs trnR|atpA trnR-atpA 10776 11252 0 477 LSC 0.022661 29 51 102 231 yes 0.714286 6 0.833333 0.022108 1.000000 66.900000 atpA gene atpA atpA 11253 12776 -1 1524 LSC 0.002625 10 0 7 63 no 0.428571 5 0.600000 0.002625 1.000000 35.500000 IGS_016 igs atpA|atpF atpA-atpF 12777 12838 0 62 LSC 0.000000 0 0 71 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 atpF gene atpF atpF 12839 14170 -1 1332 LSC 0.007079 25 6 133 47 no 1.000000 7 1.000000 0.006663 0.998498 53.300000 IGS_017 igs atpF|atpH atpF-atpH 14171 14494 0 324 LSC 0.005585 5 0 204 141 no 0.285714 4 0.500000 0.005585 1.000000 39.600000 atpH gene atpH atpH 14495 14740 -1 246 LSC 0.003871 2 0 9 1 no 0.000000 2 0.000000 0.003871 1.000000 21.600000 IGS_018 igs atpH|atpI atpH-atpI 14741 15682 0 942 LSC 0.009423 22 15 15 37 no 1.000000 7 1.000000 0.009296 1.000000 53.900000 atpI gene atpI atpI 15683 16426 -1 744 LSC 0.004224 7 0 25 68 no 0.285714 4 0.500000 0.004224 1.000000 35.300000 IGS_019 igs atpI|rps2 atpI-rps2 16427 16637 0 211 LSC 0.007222 3 3 224 266 no 0.428571 5 0.600000 0.007285 1.000000 48.400000 rps2 gene rps2 rps2 16638 17348 -1 711 LSC 0.003751 6 0 24 31 no 0.142857 3 0.333333 0.003751 1.000000 32.200000 IGS_020 igs rps2|rpoC2 rps2-rpoC2 17349 17556 0 208 LSC 0.006136 3 7 74 25 no 0.142857 3 0.333333 0.004201 1.000000 31.800000 rpoC2 gene rpoC2 rpoC2 17557 21729 -1 4173 LSC 0.004724 49 0 58 26 no 1.000000 7 1.000000 0.004724 1.000000 44.300000 IGS_021 igs rpoC2|rpoC1 rpoC2-rpoC1 21730 21910 0 181 LSC 0.011050 5 0 300 114 no 0.428571 4 0.750000 0.011050 1.000000 43.800000 rpoC1 gene rpoC1 rpoC1 21911 24708 -1 2798 LSC 0.003880 29 5 14 227 no 1.000000 7 1.000000 0.003882 1.000000 45.400000 IGS_022 igs rpoC1|rpoB rpoC1-rpoB 24709 24713 0 5 LSC 0.000000 0 0 114 222 no 0.000000 1 0.000000 NA 1.000000 27.300000 rpoB gene rpoB rpoB 24714 27926 -1 3213 LSC 0.002312 19 0 119 226 no 0.714286 6 0.833333 0.002312 1.000000 45.600000 IGS_023 igs rpoB|trnC rpoB-trnC 27927 29081 0 1155 LSC 0.013787 38 10 274 4 yes 0.714286 6 0.833333 0.013698 0.999134 50.000000 trnC tRNA trnC trnC 29082 29154 1 73 LSC 0.006523 1 0 11 67 no 0.000000 2 0.000000 0.006523 1.000000 24.200000 IGS_024 igs trnC|petN trnC-petN 29155 30047 0 893 LSC 0.010932 23 23 68 110 yes 1.000000 7 1.000000 0.011112 0.997760 59.900000 petN gene petN petN 30048 30137 1 90 LSC 0.000000 0 0 13 20 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_025 igs petN|psbM petN-psbM 30138 31039 0 902 LSC 0.012987 30 20 103 113 yes 0.714286 6 0.833333 0.013139 0.997783 58.700000 psbM gene psbM psbM 31040 31144 -1 105 LSC 0.000000 0 0 16 8 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_026 igs psbM|trnD psbM-trnD 31145 32252 0 1108 LSC 0.013624 36 7 121 270 yes 0.714286 6 0.833333 0.013686 1.000000 58.400000 trnD tRNA trnD trnD 32253 32328 -1 76 LSC 0.000000 0 0 16 194 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_027 igs trnD|trnY trnD-trnY 32329 32633 0 305 LSC 0.001561 1 0 92 300 no 0.000000 2 0.000000 0.001561 1.000000 26.900000 trnY tRNA trnY trnY 32634 32717 -1 84 LSC 0.000000 0 0 110 242 no 0.000000 1 0.000000 0.000000 1.000000 27.000000 IGS_028 igs trnY|trnE trnY-trnE 32718 32775 0 58 LSC 0.000000 0 0 194 184 no 0.000000 1 0.000000 0.000000 1.000000 32.600000 trnE tRNA trnE trnE 32776 32850 -1 75 LSC 0.000000 0 0 252 109 no 0.000000 1 0.000000 0.000000 1.000000 26.900000 IGS_029 igs trnE|trnT trnE-trnT 32851 33822 0 972 LSC 0.012707 27 278 300 141 yes 1.000000 7 1.000000 0.013795 0.976337 66.500000 trnT tRNA trnT trnT 33823 33896 1 74 LSC 0.000000 0 0 32 67 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_030 igs trnT|psbD trnT-psbD 33897 34999 0 1103 LSC 0.012520 35 8 106 300 yes 1.000000 7 1.000000 0.012580 1.000000 62.100000 psbD gene psbD psbD 35000 36061 1 1062 LSC 0.001166 3 0 110 126 no 0.142857 4 0.250000 0.001166 1.000000 36.800000 psbC gene psbC psbC 36009 37430 1 1422 LSC 0.002277 9 0 300 24 no 0.714286 6 0.833333 0.002277 1.000000 42.000000 IGS_032 igs psbC|trnS psbC-trnS 37431 37651 0 221 LSC 0.024564 10 9 135 188 no 0.142857 3 0.333333 0.024875 1.000000 53.200000 trnS tRNA trnS trnS 37652 37744 -1 93 LSC 0.000000 0 0 71 95 no 0.000000 1 0.000000 0.000000 1.000000 24.100000 IGS_033 igs trnS|psbZ trnS-psbZ 37745 38083 0 339 LSC 0.000843 1 1 164 59 no 0.142857 3 0.333333 0.000844 1.000000 27.800000 psbZ gene psbZ psbZ 38084 38272 1 189 LSC 0.002520 1 0 243 35 no 0.000000 2 0.000000 0.002520 1.000000 23.200000 IGS_034 igs psbZ|trnG psbZ-trnG 38273 38770 0 498 LSC 0.015108 18 0 129 47 no 0.571429 5 0.800000 0.015108 1.000000 48.400000 trnG tRNA trnG trnG 38771 38842 1 72 LSC 0.003968 1 0 10 52 no 0.142857 2 0.500000 0.003968 1.000000 25.700000 IGS_035 igs trnG|trnM trnG-trnM 38843 39021 0 179 LSC 0.010375 5 12 24 193 no 0.714286 6 0.833333 0.010113 1.000000 47.900000 trnM tRNA trnM trnM 39022 39097 -1 76 LSC 0.000000 0 0 12 117 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_036 igs trnM|rps14 trnM-rps14 39098 39245 0 148 LSC 0.003218 1 0 88 63 no 0.000000 2 0.000000 0.003218 1.000000 25.800000 rps14 gene rps14 rps14 39246 39548 -1 303 LSC 0.002515 2 0 30 143 no 0.142857 3 0.333333 0.002515 1.000000 25.700000 IGS_037 igs rps14|psaB rps14-psaB 39549 39670 0 122 LSC 0.000000 0 0 148 21 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 psaB gene psaB psaB 39671 41875 -1 2205 LSC 0.002376 13 0 270 300 yes 1.000000 7 1.000000 0.002376 1.000000 59.100000 IGS_038 igs psaB|psaA psaB-psaA 41876 41900 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaA gene psaA psaA 41901 44153 -1 2253 LSC 0.002367 13 0 300 225 yes 1.000000 7 1.000000 0.002367 1.000000 59.000000 IGS_039 igs psaA|ycf3 psaA-ycf3 44154 44863 0 710 LSC 0.006573 11 13 82 166 no 0.714286 6 0.833333 0.006617 1.000000 51.600000 ycf3 gene ycf3 ycf3 44864 46861 -1 1998 LSC 0.005148 24 4 35 124 no 1.000000 7 1.000000 0.005154 0.999499 49.400000 IGS_040 igs ycf3|trnS ycf3-trnS 46862 47466 0 605 LSC 0.007241 12 2 35 102 no 0.714286 6 0.833333 0.007248 1.000000 47.200000 trnS tRNA trnS trnS 47467 47553 1 87 LSC 0.000000 0 0 151 15 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_041 igs trnS|rps4 trnS-rps4 47554 47845 0 292 LSC 0.005545 5 0 238 42 no 0.428571 4 0.750000 0.005545 1.000000 34.600000 rps4 gene rps4 rps4 47846 48451 -1 606 LSC 0.003772 6 0 46 20 no 0.428571 5 0.600000 0.003772 1.000000 37.500000 IGS_042 igs rps4|trnT rps4-trnT 48452 48790 0 339 LSC 0.022194 17 0 56 90 no 0.571429 5 0.800000 0.022194 1.000000 50.700000 trnT tRNA trnT trnT 48791 48865 1 75 LSC 0.000000 0 0 19 15 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_043 igs trnT|trnL trnT-trnL 48866 49827 0 962 LSC 0.017352 38 37 94 142 yes 1.000000 7 1.000000 0.016870 0.992723 67.900000 trnL_part1 tRNA trnL trnL 49828 49862 1 35 LSC 0.000000 0 0 26 107 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 trnL_part2 tRNA trnL trnL 50374 50423 1 50 LSC 0.000000 0 0 67 94 no 0.000000 1 0.000000 0.000000 1.000000 23.800000 IGS_046 igs trnL|trnF trnL-trnF 50424 50786 0 363 LSC 0.014063 11 134 117 75 no 0.714286 6 0.833333 0.011471 1.000000 53.700000 trnF tRNA trnF trnF 50787 50860 1 74 LSC 0.000000 0 0 100 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_047 igs trnF|ndhJ trnF-ndhJ 50861 51562 0 702 LSC 0.011600 19 6 174 192 yes 1.000000 7 1.000000 0.011672 1.000000 66.400000 ndhJ gene ndhJ ndhJ 51563 52039 -1 477 LSC 0.002795 3 0 115 6 no 0.142857 4 0.250000 0.002795 1.000000 27.600000 IGS_048 igs ndhJ|ndhK ndhJ-ndhK 52040 52156 0 117 LSC 0.014652 4 0 113 54 no 0.142857 3 0.333333 0.014652 1.000000 36.300000 ndhK gene ndhK ndhK 52157 52837 -1 681 LSC 0.001958 3 0 31 141 no 0.142857 4 0.250000 0.001958 1.000000 31.400000 IGS_049 igs ndhK|ndhC ndhK-ndhC 52838 52879 0 42 LSC 0.000000 0 0 300 99 no 0.000000 1 0.000000 0.000000 1.000000 26.200000 ndhC gene ndhC ndhC 52880 53242 -1 363 LSC 0.001312 1 0 300 84 no 0.000000 2 0.000000 0.001312 1.000000 27.300000 IGS_050 igs ndhC|trnM ndhC-trnM 53243 54825 0 1583 LSC 0.007340 31 4 263 90 no 1.000000 7 1.000000 0.007350 1.000000 56.400000 trnM tRNA trnM trnM 54826 54898 1 73 LSC 0.000000 0 0 106 17 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_051 igs trnM|atpE trnM-atpE 54899 55072 0 174 LSC 0.019704 8 0 179 162 no 0.285714 4 0.500000 0.019704 1.000000 50.900000 atpE gene atpE atpE 55073 55483 -1 411 LSC 0.001390 2 0 19 300 no 0.285714 3 0.666667 0.001390 1.000000 29.100000 atpB gene atpB atpB 55480 56976 -1 1497 LSC 0.003563 14 0 106 27 no 0.714286 6 0.833333 0.003563 1.000000 43.200000 IGS_053 igs atpB|rbcL atpB-rbcL 56977 57755 0 779 LSC 0.004652 9 23 41 86 no 1.000000 7 1.000000 0.004734 0.996149 53.700000 rbcL gene rbcL rbcL 57756 59183 1 1428 LSC 0.003735 12 0 107 126 no 0.714286 6 0.833333 0.003735 1.000000 49.100000 IGS_054 igs rbcL|accD rbcL-accD 59184 59869 0 686 LSC 0.008347 14 35 47 77 no 0.714286 6 0.833333 0.008210 0.991254 53.900000 accD gene accD accD 59870 61339 1 1470 LSC 0.004794 18 0 61 56 no 0.714286 6 0.833333 0.004794 1.000000 46.300000 IGS_055 igs accD|psaI accD-psaI 61340 62068 0 729 LSC 0.009929 19 5 13 120 no 1.000000 7 1.000000 0.009978 1.000000 53.200000 psaI gene psaI psaI 62069 62182 1 114 LSC 0.000000 0 0 227 6 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_056 igs psaI|ycf4 psaI-ycf4 62183 62598 0 416 LSC 0.007784 8 5 300 170 no 0.428571 5 0.600000 0.007863 1.000000 49.200000 ycf4 gene ycf4 ycf4 62599 63153 1 555 LSC 0.002746 4 0 46 30 no 0.142857 4 0.250000 0.002746 1.000000 31.100000 IGS_057 igs ycf4|cemA ycf4-cemA 63154 63575 0 422 LSC 0.009704 11 6 18 170 no 0.714286 6 0.833333 0.009831 0.990521 45.100000 cemA gene cemA cemA 63576 64265 1 690 LSC 0.005383 9 0 12 57 no 0.714286 6 0.833333 0.005383 1.000000 43.300000 IGS_058 igs cemA|petA cemA-petA 64266 64458 0 193 LSC 0.002467 1 0 75 62 no 0.000000 2 0.000000 0.002467 1.000000 25.200000 petA gene petA petA 64459 65421 1 963 LSC 0.001582 4 0 135 6 no 0.285714 4 0.500000 0.001582 1.000000 32.000000 IGS_059 igs petA|psbJ petA-psbJ 65422 66420 0 999 LSC 0.012870 31 49 75 197 yes 0.714286 6 0.833333 0.013350 1.000000 59.400000 psbJ gene psbJ psbJ 66421 66564 -1 144 LSC 0.000000 0 0 4 53 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_060 igs psbJ|psbL psbJ-psbL 66565 66673 0 109 LSC 0.004369 1 0 148 69 no 0.000000 2 0.000000 0.004369 1.000000 27.000000 psbL gene psbL psbL 66674 66790 -1 117 LSC 0.002442 1 0 55 106 no 0.142857 2 0.500000 0.002442 1.000000 27.700000 IGS_061 igs psbL|psbF psbL-psbF 66791 66812 0 22 LSC 0.000000 0 0 47 84 no 0.000000 1 0.000000 0.000000 1.000000 22.300000 psbF gene psbF psbF 66813 66932 -1 120 LSC 0.002381 1 0 69 57 no 0.142857 2 0.500000 0.002381 1.000000 27.800000 IGS_062 igs psbF|psbE psbF-psbE 66933 66941 0 9 LSC 0.000000 0 0 35 48 no 0.000000 1 0.000000 NA 1.000000 21.400000 psbE gene psbE psbE 66942 67193 -1 252 LSC 0.003401 2 0 44 67 no 0.142857 3 0.333333 0.003401 1.000000 27.300000 IGS_063 igs psbE|petL psbE-petL 67194 68439 0 1246 LSC 0.011511 37 16 179 4 no 0.714286 6 0.833333 0.010956 1.000000 49.100000 petL gene petL petL 68440 68535 1 96 LSC 0.004960 1 0 52 7 no 0.000000 2 0.000000 0.004960 1.000000 22.800000 IGS_064 igs petL|petG petL-petG 68536 68726 0 191 LSC 0.015956 7 1 91 212 no 0.571429 5 0.800000 0.016003 1.000000 48.700000 petG gene petG petG 68727 68840 1 114 LSC 0.000000 0 0 15 98 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_065 igs petG|trnW petG-trnW 68841 68956 0 116 LSC 0.004105 1 0 129 87 no 0.000000 2 0.000000 0.004105 1.000000 28.200000 trnW tRNA trnW trnW 68957 69030 -1 74 LSC 0.000000 0 0 17 13 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_066 igs trnW|trnP trnW-trnP 69031 69191 0 161 LSC 0.014197 6 0 91 153 no 0.428571 5 0.600000 0.014197 1.000000 44.700000 trnP tRNA trnP trnP 69192 69267 -1 76 LSC 0.000000 0 0 15 77 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_067 igs trnP|psaJ trnP-psaJ 69268 69660 0 393 LSC 0.007118 7 5 91 29 no 0.285714 4 0.500000 0.007118 0.987277 34.700000 psaJ gene psaJ psaJ 69661 69795 1 135 LSC 0.012698 4 0 84 32 no 0.142857 3 0.333333 0.012698 1.000000 33.200000 IGS_068 igs psaJ|rpl33 psaJ-rpl33 69796 70207 0 412 LSC 0.008553 9 4 18 145 no 0.714286 6 0.833333 0.007212 0.995146 43.400000 rpl33 gene rpl33 rpl33 70208 70408 1 201 LSC 0.001421 1 0 34 76 no 0.142857 2 0.500000 0.001421 1.000000 25.200000 IGS_069 igs rpl33|rps18 rpl33-rps18 70409 70579 0 171 LSC 0.003342 2 0 55 270 no 0.285714 3 0.666667 0.003342 1.000000 31.200000 rps18 gene rps18 rps18 70580 70885 1 306 LSC 0.001556 1 0 89 19 no 0.000000 2 0.000000 0.001556 1.000000 21.400000 IGS_070 igs rps18|rpl20 rps18-rpl20 70886 71154 0 269 LSC 0.012038 7 0 35 41 no 0.142857 4 0.250000 0.012038 1.000000 32.700000 rpl20 gene rpl20 rpl20 71155 71508 -1 354 LSC 0.001614 2 0 18 66 no 0.285714 3 0.666667 0.001614 1.000000 28.000000 IGS_071 igs rpl20|rps12 rpl20-rps12 71509 72297 0 789 LSC 0.007242 13 7 166 133 no 0.714286 6 0.833333 0.007289 1.000000 54.700000 rps12_part1 gene rps12 rps12 72298 72411 -1 114 LSC 0.000000 0 0 46 19 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_072 igs rps12|clpP rps12-clpP 72412 72595 0 184 LSC 0.013199 5 7 160 147 no 0.714286 6 0.833333 0.013535 0.994565 56.800000 clpP gene clpP clpP 72596 74613 -1 2018 LSC 0.008028 40 100 12 89 no 0.714286 6 0.833333 0.007684 0.999009 50.100000 IGS_073 igs clpP|psbB clpP-psbB 74614 75084 0 471 LSC 0.004691 5 29 34 239 no 0.285714 4 0.500000 0.004432 1.000000 39.400000 psbB gene psbB psbB 75085 76605 1 1521 LSC 0.003131 13 0 20 2 no 0.714286 6 0.833333 0.003131 1.000000 41.000000 IGS_074 igs psbB|psbT psbB-psbT 76606 76797 0 192 LSC 0.002480 1 0 129 41 no 0.000000 2 0.000000 0.002480 1.000000 23.600000 psbT gene psbT psbT 76798 76905 1 108 LSC 0.002646 1 0 189 144 no 0.142857 2 0.500000 0.002646 1.000000 34.600000 IGS_075 igs psbT|psbN psbT-psbN 76906 76965 0 60 LSC 0.000000 0 0 66 84 no 0.000000 1 0.000000 0.000000 1.000000 23.700000 psbN gene psbN psbN 76966 77097 -1 132 LSC 0.004329 1 0 126 90 no 0.000000 2 0.000000 0.004329 1.000000 28.400000 IGS_076 igs psbN|psbH psbN-psbH 77098 77210 0 113 LSC 0.005057 1 0 47 116 no 0.000000 2 0.000000 0.005057 1.000000 25.700000 psbH gene psbH psbH 77211 77432 1 222 LSC 0.001287 1 0 22 81 no 0.142857 2 0.500000 0.001287 1.000000 24.200000 IGS_077 igs psbH|petB psbH-petB 77433 77566 0 134 LSC 0.002132 1 0 105 27 no 0.142857 2 0.500000 0.002132 1.000000 25.300000 petB gene petB petB 77567 78987 1 1421 LSC 0.005228 17 1 52 5 no 0.428571 5 0.600000 0.005229 1.000000 37.300000 IGS_078 igs petB|petD petB-petD 78988 79870 0 883 LSC 0.009384 22 5 192 86 no 0.714286 6 0.833333 0.009419 1.000000 52.800000 petD gene petD petD 79871 80395 1 525 LSC 0.002358 3 0 82 33 no 0.142857 3 0.333333 0.002358 1.000000 30.400000 IGS_079 igs petD|rpoA petD-rpoA 80396 80608 0 213 LSC 0.020121 10 13 288 12 no 0.428571 5 0.600000 0.020561 1.000000 48.500000 rpoA gene rpoA rpoA 80609 81610 -1 1002 LSC 0.005798 13 0 3 75 no 0.714286 6 0.833333 0.005798 1.000000 42.800000 IGS_080 igs rpoA|rps11 rpoA-rps11 81611 81676 0 66 LSC 0.000000 0 0 125 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 rps11 gene rps11 rps11 81677 82093 -1 417 LSC 0.003654 3 0 191 61 no 0.000000 3 0.000000 0.003654 1.000000 28.300000 IGS_081 igs rps11|rpl36 rps11-rpl36 82094 82220 0 127 LSC 0.017998 5 0 206 54 no 0.285714 4 0.500000 0.017998 1.000000 41.200000 rpl36 gene rpl36 rpl36 82221 82334 -1 114 LSC 0.002506 1 0 18 16 no 0.142857 2 0.500000 0.002506 1.000000 24.900000 IGS_082 igs rpl36|rps8 rpl36-rps8 82335 82824 0 490 LSC 0.009563 12 11 59 84 no 1.000000 7 1.000000 0.009280 1.000000 55.900000 rps8 gene rps8 rps8 82825 83229 -1 405 LSC 0.004468 5 0 4 15 no 0.428571 4 0.750000 0.004468 1.000000 32.800000 IGS_083 igs rps8|rpl14 rps8-rpl14 83230 83377 0 148 LSC 0.009009 3 0 95 33 no 0.285714 4 0.500000 0.009009 1.000000 33.200000 rpl14 gene rpl14 rpl14 83378 83746 -1 369 LSC 0.002839 3 0 22 18 no 0.285714 4 0.500000 0.002839 1.000000 29.200000 IGS_084 igs rpl14|rpl16 rpl14-rpl16 83747 83883 0 137 LSC 0.011123 4 1 41 43 no 0.428571 5 0.600000 0.011138 1.000000 39.400000 rpl16 gene rpl16 rpl16 83884 84243 -1 360 LSC 0.006614 6 0 6 3 no 0.714286 6 0.833333 0.006614 1.000000 38.700000 IGS_085 igs rpl16|rps3 rpl16-rps3 84244 85527 0 1284 LSC 0.008029 26 12 98 30 no 1.000000 7 1.000000 0.007809 1.000000 53.200000 rps3 gene rps3 rps3 85528 86184 -1 657 LSC 0.003334 5 0 45 41 no 0.285714 3 0.666667 0.003334 1.000000 35.900000 rpl22 gene rpl22 rpl22 86169 86672 -1 504 LSC 0.005858 7 0 32 226 no 0.285714 4 0.500000 0.005858 1.000000 35.100000 IGS_087 igs rpl22|rps19 rpl22-rps19 86673 86736 0 64 LSC 0.000000 0 0 9 162 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 rps19 gene rps19 rps19 86737 86886 -1 150 LSC 0.000000 0 0 73 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_088 igs rps19|rpl2 rps19-rpl2 86887 87076 0 190 LSC 0.008020 4 0 223 264 no 0.285714 4 0.500000 0.008020 1.000000 45.300000 rpl2 gene rpl2 rpl2 87077 88566 -1 1490 IRb 0.000639 2 0 93 300 no 0.000000 2 0.000000 0.000639 1.000000 32.400000 IGS_089 igs rpl2|rpl23 rpl2-rpl23 88567 88584 0 18 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 88585 88866 -1 282 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_090 igs rpl23|trnM rpl23-trnM 88867 89026 0 160 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnM tRNA trnM trnM 89027 89101 -1 75 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_091 igs trnM|ycf2 trnM-ycf2 89102 89189 0 88 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf2 gene ycf2 ycf2 89190 96038 1 6849 IRb 0.000556 10 6 300 21 no 0.714286 6 0.833333 0.000556 1.000000 34.300000 IGS_092 igs ycf2|trnL ycf2-trnL 96039 96973 0 935 IRb 0.000815 2 0 17 300 no 0.142857 3 0.333333 0.000815 1.000000 29.600000 IGS_093 igs trnL|ndhB trnL-ndhB 97057 97637 0 581 IRb 0.000820 1 0 300 300 no 0.000000 2 0.000000 0.000820 1.000000 40.200000 ndhB gene ndhB ndhB 97638 99856 -1 2219 IRb 0.001073 6 0 47 206 no 0.428571 5 0.600000 0.001073 1.000000 35.900000 IGS_094 igs ndhB|rps7 ndhB-rps7 99857 100189 0 333 IRb 0.001430 1 0 300 300 no 0.000000 2 0.000000 0.001430 1.000000 35.500000 rps7 gene rps7 rps7 100190 100657 -1 468 IRb 0.000000 0 0 126 300 no 0.000000 1 0.000000 0.000000 1.000000 31.700000 IGS_095 igs rps7|rps12 rps7-rps12 100658 100710 0 53 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps12_part2 gene rps12 rps12 100711 101508 -1 798 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_096 igs rps12|ycf15 rps12-ycf15 101509 102270 0 762 IRb 0.000375 1 0 300 300 no 0.142857 2 0.500000 0.000375 1.000000 43.000000 ycf15 gene ycf15 ycf15 102271 102462 -1 192 IRb 0.000000 0 0 300 248 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_097 igs ycf15|trnV ycf15-trnV 102463 103154 0 692 IRb 0.002064 4 0 300 97 no 0.571429 5 0.800000 0.002064 1.000000 44.600000 trnV tRNA trnV trnV 103155 103226 1 72 IRb 0.000000 0 0 74 25 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_098 igs trnV|rrn16S trnV-rrn16S 103227 103453 0 227 IRb 0.002098 1 0 146 193 no 0.000000 2 0.000000 0.002098 1.000000 31.200000 rrn16S rRNA rrn16S rrn16S 103454 104944 1 1491 IRb 0.000383 1 0 201 189 no 0.000000 2 0.000000 0.000383 1.000000 39.400000 IGS_099 igs rrn16S|trnI rrn16S-trnI 104945 105240 0 296 IRb 0.001609 1 0 300 300 no 0.000000 2 0.000000 0.001609 1.000000 34.900000 trnI_part1 tRNA trnI trnI 105241 105273 1 33 IRb 0.000000 0 0 106 300 no 0.000000 1 0.000000 0.000000 1.000000 26.700000 trnI_part2 tRNA trnI trnI 106088 106128 1 41 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_102 igs trnI|trnA trnI-trnA 106129 106200 0 72 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 106201 106238 -1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 107039 107075 -1 37 IRb 0.000000 0 0 300 75 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 IGS_105 igs trnA|rrn23S trnA-rrn23S 107076 107227 0 152 IRb 0.006266 2 0 300 300 no 0.000000 2 0.000000 0.006266 1.000000 38.200000 rrn23S rRNA rrn23S rrn23S 107228 110036 1 2809 IRb 0.000271 2 0 30 300 no 0.142857 3 0.333333 0.000271 1.000000 27.400000 IGS_106 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 110037 110135 0 99 IRb 0.000000 0 0 300 231 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 110136 110404 -1 269 IRb 0.001062 1 0 300 265 no 0.142857 2 0.500000 0.001062 1.000000 37.400000 IGS_107 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 110405 110608 0 204 IRb 0.000000 0 0 37 61 no 0.000000 1 0.000000 0.000000 1.000000 21.500000 rrn5S rRNA rrn5S rrn5S 110609 110875 1 267 IRb 0.002854 2 1 241 206 no 0.142857 3 0.333333 0.002862 1.000000 39.100000 trnR tRNA trnR trnR 110876 110950 1 75 IRb 0.000000 0 0 148 131 no 0.000000 1 0.000000 0.000000 1.000000 28.600000 IGS_109 igs trnR|trnN trnR-trnN 110951 111567 0 617 IRb 0.006483 10 0 223 294 yes 0.714286 6 0.833333 0.006483 1.000000 58.300000 trnN tRNA trnN trnN 111568 111641 -1 74 IRb 0.000000 0 0 18 220 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 IGS_110 igs trnN|ycf1 trnN-ycf1 111642 111964 0 323 IRb 0.002359 2 0 92 300 no 0.142857 3 0.333333 0.002359 1.000000 30.600000 ycf1 gene ycf1 ycf1 111965 113170 1 1206 IRb 0.000632 2 5 58 4 no 0.428571 4 0.750000 0.000633 1.000000 34.300000 ndhF gene ndhF ndhF 113139 115385 -1 2247 SSC 0.008731 48 5 16 7 no 1.000000 7 1.000000 0.008738 1.000000 49.600000 IGS_112 igs ndhF|rpl32 ndhF-rpl32 115386 115990 0 605 SSC 0.010468 20 16 43 32 no 0.714286 6 0.833333 0.010391 1.000000 52.800000 rpl32 gene rpl32 rpl32 115991 116182 -1 192 SSC 0.015377 6 0 20 37 no 0.000000 3 0.000000 0.015377 1.000000 31.100000 IGS_113 igs rpl32|trnL rpl32-trnL 116183 117040 0 858 SSC 0.017420 39 6 35 96 yes 1.000000 7 1.000000 0.017088 0.996503 60.600000 IGS_114 igs trnL|ccsA trnL-ccsA 117121 117223 0 103 SSC 0.021729 5 2 101 20 no 0.714286 6 0.833333 0.016772 1.000000 51.700000 ccsA gene ccsA ccsA 117224 118195 1 972 SSC 0.008622 22 0 11 21 no 1.000000 7 1.000000 0.008622 1.000000 51.300000 IGS_115 igs ccsA|ndhD ccsA-ndhD 118196 118464 0 269 SSC 0.016347 11 5 44 243 no 1.000000 7 1.000000 0.016574 0.992565 55.200000 ndhD gene ndhD ndhD 118465 119874 -1 1410 SSC 0.004458 15 0 27 126 no 0.714286 6 0.833333 0.004458 1.000000 43.800000 IGS_116 igs ndhD|psaC ndhD-psaC 119875 120112 0 238 SSC 0.010044 5 6 38 189 no 0.285714 4 0.500000 0.009040 1.000000 37.100000 psaC gene psaC psaC 120113 120358 -1 246 SSC 0.001161 1 0 77 49 no 0.142857 2 0.500000 0.001161 1.000000 26.100000 IGS_117 igs psaC|ndhE psaC-ndhE 120359 120589 0 231 SSC 0.014842 10 0 56 60 no 0.428571 5 0.600000 0.014842 1.000000 43.100000 ndhE gene ndhE ndhE 120590 120892 -1 303 SSC 0.004715 3 0 27 130 no 0.000000 2 0.000000 0.004715 1.000000 24.200000 IGS_118 igs ndhE|ndhG ndhE-ndhG 120893 121121 0 229 SSC 0.011645 7 0 9 15 no 0.714286 6 0.833333 0.011645 1.000000 41.900000 ndhG gene ndhG ndhG 121122 121652 -1 531 SSC 0.009147 12 0 5 25 no 0.714286 6 0.833333 0.009147 1.000000 44.300000 IGS_119 igs ndhG|ndhI ndhG-ndhI 121653 122005 0 353 SSC 0.013220 12 0 41 224 no 0.714286 6 0.833333 0.013220 1.000000 46.500000 ndhI gene ndhI ndhI 122006 122506 -1 501 SSC 0.002091 3 0 4 12 no 0.285714 4 0.500000 0.002091 1.000000 30.300000 IGS_120 igs ndhI|ndhA ndhI-ndhA 122507 122586 0 80 SSC 0.015476 3 0 104 84 no 0.142857 3 0.333333 0.015476 1.000000 39.400000 ndhA gene ndhA ndhA 122587 124820 -1 2234 SSC 0.005806 33 6 55 168 no 1.000000 7 1.000000 0.005721 1.000000 51.100000 IGS_121 igs ndhA|ndhH ndhA-ndhH 124821 124821 0 1 SSC 0.000000 0 0 59 167 no 0.000000 1 0.000000 NA 1.000000 23.200000 ndhH gene ndhH ndhH 124822 126003 -1 1182 SSC 0.004512 13 0 60 24 no 0.428571 5 0.600000 0.004512 1.000000 38.200000 IGS_122 igs ndhH|rps15 ndhH-rps15 126004 126101 0 98 SSC 0.005831 2 0 26 99 no 0.285714 3 0.666667 0.005831 1.000000 31.200000 rps15 gene rps15 rps15 126102 126374 -1 273 SSC 0.006628 4 0 56 33 no 0.142857 4 0.250000 0.006628 1.000000 28.700000 IGS_123 igs rps15|ycf1 rps15-ycf1 126375 126775 0 401 SSC 0.021256 21 1 19 114 yes 1.000000 7 1.000000 0.021301 1.000000 57.400000 ycf1 gene ycf1 ycf1 126776 132286 -1 5511 SSC 0.010740 152 6 3 58 yes 1.000000 7 1.000000 0.010747 1.000000 46.100000 IGS_124 igs ycf1|trnN ycf1-trnN 132287 132609 0 323 IRa 0.002359 2 0 300 92 no 0.142857 3 0.333333 0.002359 1.000000 30.600000 trnN tRNA trnN trnN 132610 132683 1 74 IRa 0.000000 0 0 220 18 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 IGS_125 igs trnN|trnR trnN-trnR 132684 133300 0 617 IRa 0.006483 10 0 294 223 no 0.714286 6 0.833333 0.006483 1.000000 58.300000 trnR tRNA trnR trnR 133301 133375 -1 75 IRa 0.000000 0 0 131 148 no 0.000000 1 0.000000 0.000000 1.000000 28.600000 rrn5S rRNA rrn5S rrn5S 133376 133642 -1 267 IRa 0.002854 2 1 206 241 no 0.142857 3 0.333333 0.002862 1.000000 39.100000 IGS_127 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 133643 133846 0 204 IRa 0.000000 0 0 61 37 no 0.000000 1 0.000000 0.000000 1.000000 21.500000 rrn4.5S rRNA rrn4.5S rrn4.5S 133847 134115 1 269 IRa 0.001062 1 0 265 300 no 0.142857 2 0.500000 0.001062 1.000000 37.400000 IGS_128 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 134116 134214 0 99 IRa 0.000000 0 0 231 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 134215 137023 -1 2809 IRa 0.000271 2 0 300 30 no 0.142857 3 0.333333 0.000271 1.000000 27.400000 IGS_129 igs rrn23S|trnA rrn23S-trnA 137024 137175 0 152 IRa 0.006266 2 0 300 300 no 0.000000 2 0.000000 0.006266 1.000000 38.200000 trnA_part1 tRNA trnA trnA 137176 137212 1 37 IRa 0.000000 0 0 75 300 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 trnA_part2 tRNA trnA trnA 138013 138050 1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_132 igs trnA|trnI trnA-trnI 138051 138122 0 72 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 138123 138163 -1 41 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part1 tRNA trnI trnI 138978 139010 -1 33 IRa 0.000000 0 0 300 106 no 0.000000 1 0.000000 0.000000 1.000000 26.700000 IGS_135 igs trnI|rrn16S trnI-rrn16S 139011 139306 0 296 IRa 0.001609 1 0 300 300 no 0.000000 2 0.000000 0.001609 1.000000 34.900000 rrn16S rRNA rrn16S rrn16S 139307 140797 -1 1491 IRa 0.000383 1 0 189 201 no 0.000000 2 0.000000 0.000383 1.000000 39.400000 IGS_136 igs rrn16S|trnV rrn16S-trnV 140798 141024 0 227 IRa 0.002098 1 0 193 146 no 0.000000 2 0.000000 0.002098 1.000000 31.200000 trnV tRNA trnV trnV 141025 141096 -1 72 IRa 0.000000 0 0 25 74 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_137 igs trnV|ycf15 trnV-ycf15 141097 141788 0 692 IRa 0.002064 4 0 97 300 no 0.571429 5 0.800000 0.002064 1.000000 44.600000 ycf15 gene ycf15 ycf15 141789 141980 1 192 IRa 0.000000 0 0 248 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_138 igs ycf15|rps12 ycf15-rps12 141981 142742 0 762 IRa 0.000375 1 0 300 300 no 0.142857 2 0.500000 0.000375 1.000000 43.000000 rps12_part2 gene rps12 rps12 142743 143540 1 798 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_139 igs rps12|rps7 rps12-rps7 143541 143593 0 53 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 143594 144061 1 468 IRa 0.000000 0 0 300 126 no 0.000000 1 0.000000 0.000000 1.000000 31.700000 IGS_140 igs rps7|ndhB rps7-ndhB 144062 144394 0 333 IRa 0.001430 1 0 300 300 no 0.000000 2 0.000000 0.001430 1.000000 35.500000 ndhB gene ndhB ndhB 144395 146613 1 2219 IRa 0.001073 6 0 206 47 no 0.428571 5 0.600000 0.001073 1.000000 35.900000 IGS_141 igs ndhB|trnL ndhB-trnL 146614 147194 0 581 IRa 0.000820 1 0 300 300 no 0.000000 2 0.000000 0.000820 1.000000 40.200000 IGS_142 igs trnL|ycf2 trnL-ycf2 147278 148212 0 935 IRa 0.000815 2 0 300 17 no 0.142857 3 0.333333 0.000815 1.000000 29.600000 ycf2 gene ycf2 ycf2 148213 155061 -1 6849 IRa 0.000556 10 6 21 300 no 0.714286 6 0.833333 0.000556 1.000000 34.300000 IGS_143 igs ycf2|trnM ycf2-trnM 155062 155149 0 88 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnM tRNA trnM trnM 155150 155224 1 75 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_144 igs trnM|rpl23 trnM-rpl23 155225 155384 0 160 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl23 gene rpl23 rpl23 155385 155666 1 282 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_145 igs rpl23|rpl2 rpl23-rpl2 155667 155684 0 18 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl2 gene rpl2 rpl2 155685 157174 1 1490 IRa 0.000639 2 0 300 77 no 0.000000 2 0.000000 0.000639 1.000000 31.200000 IGS_146 igs rpl2|trnH rpl2-trnH 157175 54 0 117 IRa 0.009972 3 49 264 96 no 0.428571 5 0.600000 0.006018 1.000000 45.000000