feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH-GUG tRNA trnH-GUG trnH-GUG 15 88 -1 74 LSC 0.000000 0 74 40 39 no 0.166667 2 0.500000 0.000000 1.000000 25.800000 IGS_001 igs trnH-GUG|psbA trnH-GUG-psbA 89 286 0 198 LSC 0.006061 2 198 114 147 no 0.166667 3 0.333333 0.006061 1.000000 35.500000 psbA gene psbA psbA 287 1348 -1 1062 LSC 0.001130 2 1062 139 235 no 0.333333 4 0.500000 0.001130 1.000000 43.500000 IGS_002 igs psbA|trnK-UUU psbA-trnK-UUU 1349 1651 0 303 LSC 0.001980 1 303 300 148 no 0.166667 3 0.333333 0.001980 1.000000 35.400000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 1652 1686 -1 35 LSC 0.000000 0 35 67 113 no 0.166667 2 0.500000 0.000000 1.000000 27.900000 matK gene matK matK 1971 3479 -1 1509 LSC 0.002783 9 1509 13 13 no 1.000000 6 1.000000 0.002783 1.000000 47.700000 IGS_005 igs matK|trnK-UUU matK-trnK-UUU 3480 4220 0 741 LSC 0.004318 6 741 39 79 no 0.666667 5 0.800000 0.004336 0.998650 44.400000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 4221 4257 -1 37 LSC 0.000000 0 37 188 42 no 0.166667 2 0.500000 0.000000 1.000000 26.100000 IGS_006 igs trnK-UUU|trnQ-UUG trnK-UUU-trnQ-UUG 4258 6255 0 1998 LSC 0.009220 38 1629 225 300 yes 1.000000 6 1.000000 0.008490 0.946446 64.600000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 6256 6327 -1 72 LSC 0.000000 0 0 73 300 no 0.000000 1 0.000000 0.000000 1.000000 24.200000 IGS_007 igs trnQ-UUG|psbK trnQ-UUG-psbK 6328 6700 0 373 LSC 0.001609 1 0 145 300 no 0.000000 2 0.000000 0.001609 1.000000 32.200000 psbK gene psbK psbK 6701 6886 1 186 LSC 0.000000 0 0 65 115 no 0.000000 1 0.000000 0.000000 1.000000 23.600000 IGS_008 igs psbK|psbI psbK-psbI 6887 7307 0 421 LSC 0.004286 4 1 251 150 no 0.500000 4 0.750000 0.004286 0.997625 45.200000 psbI gene psbI psbI 7308 7418 1 111 LSC 0.000000 0 0 109 39 no 0.000000 1 0.000000 0.000000 1.000000 21.700000 IGS_009 igs psbI|trnS-GCU psbI-trnS-GCU 7419 7504 0 86 LSC 0.007752 2 0 220 103 no 0.333333 3 0.666667 0.007752 1.000000 39.100000 trnS-GCU tRNA trnS-GCU trnS-GCU 7505 7592 -1 88 LSC 0.000000 0 0 44 15 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_010 igs trnS-GCU|trnS-CGA trnS-GCU-trnS-CGA 7593 8208 0 616 LSC 0.006710 8 38 132 117 no 0.666667 5 0.800000 0.007121 0.938312 55.300000 trnS-CGA_part1 tRNA trnS-CGA trnS-CGA 8209 8240 1 32 LSC 0.000000 0 0 23 85 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 trnS-CGA_part2 tRNA trnS-CGA trnS-CGA 8942 9003 1 62 LSC 0.000000 0 0 109 93 no 0.000000 1 0.000000 0.000000 1.000000 25.700000 IGS_013 igs trnS-CGA|trnR-UCU trnS-CGA-trnR-UCU 9004 9190 0 187 LSC 0.007843 3 1 171 93 no 0.333333 4 0.500000 0.007866 1.000000 38.100000 trnR-UCU tRNA trnR-UCU trnR-UCU 9191 9262 1 72 LSC 0.000000 0 2 68 21 no 0.000000 2 0.000000 0.000000 1.000000 23.500000 IGS_014 igs trnR-UCU|atpA trnR-UCU-atpA 9263 9379 0 117 LSC 0.008547 3 12 140 283 no 0.500000 4 0.750000 0.009328 1.000000 50.900000 atpA gene atpA atpA 9380 10891 -1 1512 LSC 0.000573 2 0 22 255 no 0.333333 3 0.666667 0.000573 1.000000 33.300000 IGS_015 igs atpA|atpF atpA-atpF 10892 10960 0 69 LSC 0.000000 0 0 300 186 no 0.000000 1 0.000000 0.000000 1.000000 32.700000 atpF gene atpF atpF 10961 11515 -1 555 LSC 0.003123 3 0 300 108 no 0.166667 3 0.333333 0.003123 1.000000 37.400000 IGS_016 igs atpF|atpH atpF-atpH 11516 12132 0 617 LSC 0.005727 9 20 105 42 no 0.666667 5 0.800000 0.005837 0.985413 48.600000 atpH gene atpH atpH 12133 12381 -1 249 LSC 0.002410 1 0 13 64 no 0.000000 2 0.000000 0.002410 1.000000 21.300000 IGS_017 igs atpH|atpI atpH-atpI 12382 12646 0 265 LSC 0.009308 6 1 206 300 no 0.666667 5 0.800000 0.009317 1.000000 53.700000 atpI gene atpI atpI 12647 13390 -1 744 LSC 0.000448 1 0 22 14 no 0.166667 2 0.500000 0.000448 1.000000 29.500000 IGS_018 igs atpI|rps2 atpI-rps2 13391 13625 0 235 LSC 0.007660 4 0 300 192 no 0.666667 5 0.800000 0.007660 1.000000 51.200000 rps2 gene rps2 rps2 13626 14336 -1 711 LSC 0.003094 5 0 25 116 no 0.500000 4 0.750000 0.003094 1.000000 38.500000 IGS_019 igs rps2|rpoC2 rps2-rpoC2 14337 14583 0 247 LSC 0.005128 3 1 206 56 no 0.333333 4 0.500000 0.005147 0.995951 33.400000 rpoC2 gene rpoC2 rpoC2 14584 18720 -1 4137 LSC 0.004029 35 0 58 300 no 1.000000 6 1.000000 0.004029 1.000000 46.100000 IGS_020 igs rpoC2|rpoC1 rpoC2-rpoC1 18721 18907 0 187 LSC 0.000000 0 0 8 153 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 rpoC1 gene rpoC1 rpoC1 18908 21740 -1 2833 LSC 0.001624 11 9 195 17 no 0.666667 5 0.800000 0.001626 1.000000 37.600000 IGS_021 igs rpoC1|rpoB rpoC1-rpoB 21741 21745 0 5 LSC 0.000000 0 0 8 12 no 0.000000 1 0.000000 NA 1.000000 19.400000 rpoB gene rpoB rpoB 21746 24958 -1 3213 LSC 0.003112 21 0 13 217 no 0.666667 5 0.800000 0.003112 1.000000 37.200000 IGS_022 igs rpoB|trnC-GCA rpoB-trnC-GCA 24959 26277 0 1319 LSC 0.003894 11 26 106 60 no 0.666667 5 0.800000 0.003915 0.980288 46.600000 trnC-GCA tRNA trnC-GCA trnC-GCA 26278 26349 1 72 LSC 0.008333 1 0 25 14 no 0.000000 2 0.000000 0.008333 1.000000 25.300000 IGS_023 igs trnC-GCA|petN trnC-GCA-petN 26350 26569 0 220 LSC 0.002727 1 1 11 128 no 0.000000 2 0.000000 0.002740 0.995455 21.800000 petN gene petN petN 26570 26659 1 90 LSC 0.000000 0 0 205 38 no 0.000000 1 0.000000 0.000000 1.000000 21.600000 IGS_024 igs petN|psbM petN-psbM 26660 27431 0 772 LSC 0.009413 16 6 295 89 yes 1.000000 6 1.000000 0.009472 0.992228 58.000000 psbM gene psbM psbM 27432 27536 -1 105 LSC 0.005079 1 0 81 105 no 0.000000 2 0.000000 0.005079 1.000000 28.300000 IGS_025 igs psbM|trnD-GUC psbM-trnD-GUC 27537 28608 0 1072 LSC 0.006219 16 5 15 128 no 1.000000 6 1.000000 0.006108 1.000000 50.100000 trnD-GUC tRNA trnD-GUC trnD-GUC 28609 28682 -1 74 LSC 0.000000 0 0 24 54 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_026 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 28683 29083 0 401 LSC 0.002328 2 32 98 300 no 0.166667 3 0.333333 0.002501 0.920200 37.000000 trnY-GUA tRNA trnY-GUA trnY-GUA 29084 29167 -1 84 LSC 0.000000 0 0 141 272 no 0.000000 1 0.000000 0.000000 1.000000 29.300000 IGS_027 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 29168 29226 0 59 LSC 0.000000 0 0 225 213 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnE-UUC tRNA trnE-UUC trnE-UUC 29227 29299 -1 73 LSC 0.000000 0 0 284 140 no 0.000000 1 0.000000 0.000000 1.000000 29.200000 IGS_028 igs trnE-UUC|trnT-GGU trnE-UUC-trnT-GGU 29300 30257 0 958 LSC 0.012665 23 143 300 290 yes 1.000000 6 1.000000 0.009933 0.965553 72.100000 trnT-GGU tRNA trnT-GGU trnT-GGU 30258 30329 1 72 LSC 0.000000 0 0 101 218 no 0.000000 1 0.000000 0.000000 1.000000 26.300000 IGS_029 igs trnT-GGU|psbD trnT-GGU-psbD 30330 31870 0 1541 LSC 0.005706 18 45 173 80 no 1.000000 6 1.000000 0.005763 0.985075 56.600000 psbD gene psbD psbD 31871 32932 1 1062 LSC 0.000942 3 0 84 300 no 0.500000 4 0.750000 0.000942 1.000000 41.500000 psbC gene psbC psbC 32880 34301 1 1422 LSC 0.002344 8 0 300 1 no 1.000000 6 1.000000 0.002344 1.000000 45.600000 IGS_031 igs psbC|trnS-UGA psbC-trnS-UGA 34302 34549 0 248 LSC 0.006720 5 10 12 40 no 0.666667 5 0.800000 0.006935 0.959677 41.600000 trnS-UGA tRNA trnS-UGA trnS-UGA 34550 34642 -1 93 LSC 0.006452 1 0 29 6 no 0.000000 2 0.000000 0.006452 1.000000 23.400000 IGS_032 igs trnS-UGA|psbZ trnS-UGA-psbZ 34643 34975 0 333 LSC 0.002002 2 0 52 203 no 0.333333 3 0.666667 0.002002 1.000000 31.200000 psbZ gene psbZ psbZ 34976 35164 1 189 LSC 0.000000 0 0 202 14 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_033 igs psbZ|trnG-GCC psbZ-trnG-GCC 35165 35856 0 692 LSC 0.011561 19 46 300 145 yes 1.000000 6 1.000000 0.012139 0.956647 68.000000 trnG-GCC tRNA trnG-GCC trnG-GCC 35857 35927 1 71 LSC 0.000000 0 0 75 74 no 0.000000 1 0.000000 0.000000 1.000000 24.300000 IGS_034 igs trnG-GCC|trnM-CAU trnG-GCC-trnM-CAU 35928 36074 0 147 LSC 0.012245 3 7 146 0 no 0.166667 3 0.333333 0.012449 1.000000 35.600000 trnM-CAU tRNA trnM-CAU trnM-CAU 36075 36148 -1 74 LSC 0.020721 3 0 18 55 no 0.166667 3 0.333333 0.020721 1.000000 37.600000 IGS_035 igs trnM-CAU|rps14 trnM-CAU-rps14 36149 36308 0 160 LSC 0.003750 1 0 27 192 no 0.000000 2 0.000000 0.003750 1.000000 23.200000 rps14 gene rps14 rps14 36309 36611 -1 303 LSC 0.001100 1 0 104 300 no 0.166667 2 0.500000 0.001100 1.000000 30.600000 IGS_036 igs rps14|psaB rps14-psaB 36612 36739 0 128 LSC 0.000000 0 0 110 229 no 0.000000 1 0.000000 0.000000 1.000000 27.000000 psaB gene psaB psaB 36740 38944 -1 2205 LSC 0.001512 7 0 238 300 no 0.500000 4 0.750000 0.001512 1.000000 49.000000 IGS_037 igs psaB|psaA psaB-psaA 38945 38969 0 25 LSC 0.000000 0 0 133 300 no 0.000000 1 0.000000 0.000000 1.000000 28.700000 psaA gene psaA psaA 38970 41222 -1 2253 LSC 0.001983 8 0 158 77 no 0.333333 4 0.500000 0.001983 1.000000 36.800000 IGS_038 igs psaA|ycf3 psaA-ycf3 41223 42058 0 836 LSC 0.006619 15 20 300 174 yes 0.666667 5 0.800000 0.006716 0.988038 58.300000 ycf3 gene ycf3 ycf3 42059 44035 -1 1977 LSC 0.001957 7 1 64 300 no 0.500000 4 0.750000 0.001957 0.999494 39.500000 IGS_039 igs ycf3|trnS-GGA ycf3-trnS-GGA 44036 44816 0 781 LSC 0.003414 5 1 300 51 no 0.166667 3 0.333333 0.003418 0.998720 34.400000 trnS-GGA tRNA trnS-GGA trnS-GGA 44817 44903 1 87 LSC 0.003831 1 0 219 23 no 0.166667 2 0.500000 0.003831 1.000000 26.800000 IGS_040 igs trnS-GGA|rps4 trnS-GGA-rps4 44904 45186 0 283 LSC 0.005889 5 0 35 300 no 0.666667 5 0.800000 0.005889 1.000000 38.700000 rps4 gene rps4 rps4 45187 45783 -1 597 LSC 0.000558 1 0 41 259 no 0.166667 2 0.500000 0.000558 1.000000 31.600000 IGS_041 igs rps4|trnT-UGU rps4-trnT-UGU 45784 46341 0 558 LSC 0.002873 4 2 220 178 yes 1.000000 6 1.000000 0.002876 0.998208 58.800000 trnT-UGU tRNA trnT-UGU trnT-UGU 46342 46414 -1 73 LSC 0.000000 0 0 201 105 no 0.000000 1 0.000000 0.000000 1.000000 26.600000 IGS_042 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 46415 47253 0 839 LSC 0.003019 5 29 274 214 yes 0.666667 5 0.800000 0.002455 0.972586 57.900000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 47254 47288 1 35 LSC 0.000000 0 0 159 179 no 0.000000 1 0.000000 0.000000 1.000000 30.700000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 47795 47844 1 50 LSC 0.000000 0 0 83 25 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_045 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 47845 48233 0 389 LSC 0.007198 6 1 133 76 no 0.666667 5 0.800000 0.007205 1.000000 44.300000 trnF-GAA tRNA trnF-GAA trnF-GAA 48234 48306 1 73 LSC 0.000000 0 0 245 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_046 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 48307 49022 0 716 LSC 0.005540 9 13 300 300 yes 0.666667 5 0.800000 0.005196 0.984637 58.400000 ndhJ gene ndhJ ndhJ 49023 49499 -1 477 LSC 0.000699 1 0 32 192 no 0.166667 2 0.500000 0.000699 1.000000 28.500000 IGS_047 igs ndhJ|ndhK ndhJ-ndhK 49500 49614 0 115 LSC 0.000000 0 0 150 77 no 0.000000 1 0.000000 0.000000 1.000000 24.500000 ndhK gene ndhK ndhK 49615 50475 -1 861 LSC 0.002168 4 0 265 131 no 0.333333 4 0.500000 0.002168 1.000000 42.600000 ndhC gene ndhC ndhC 50355 50717 -1 363 LSC 0.000918 1 0 15 202 no 0.166667 2 0.500000 0.000918 1.000000 25.100000 IGS_049 igs ndhC|trnV-UAC ndhC-trnV-UAC 50718 51748 0 1031 LSC 0.006531 15 17 110 170 yes 1.000000 6 1.000000 0.006472 0.993210 58.500000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 51749 51786 -1 38 LSC 0.000000 0 0 42 132 no 0.000000 1 0.000000 0.000000 1.000000 21.900000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 52377 52413 -1 37 LSC 0.000000 0 0 160 139 no 0.000000 1 0.000000 0.000000 1.000000 29.200000 IGS_052 igs trnV-UAC|trnM-CAU trnV-UAC-trnM-CAU 52414 52595 0 182 LSC 0.001832 1 0 197 124 no 0.166667 2 0.500000 0.001832 1.000000 32.700000 trnM-CAU tRNA trnM-CAU trnM-CAU 52596 52668 1 73 LSC 0.000000 0 0 42 51 no 0.000000 1 0.000000 0.000000 1.000000 21.900000 IGS_053 igs trnM-CAU|atpE trnM-CAU-atpE 52669 52893 0 225 LSC 0.004148 2 1 115 300 no 0.333333 4 0.500000 0.004153 1.000000 37.100000 atpE gene atpE atpE 52894 53295 -1 402 LSC 0.000000 0 0 46 3 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_054 igs atpE|atpB atpE-atpB 53296 53317 0 22 LSC 0.015152 1 0 300 300 no 0.166667 2 0.500000 0.015152 1.000000 49.400000 atpB gene atpB atpB 53318 54793 -1 1476 LSC 0.001942 6 0 18 300 no 1.000000 6 1.000000 0.001942 1.000000 46.500000 IGS_055 igs atpB|rbcL atpB-rbcL 54794 55591 0 798 LSC 0.000501 1 25 171 52 no 0.500000 4 0.750000 0.000335 1.000000 42.400000 rbcL gene rbcL rbcL 55592 57019 1 1428 LSC 0.004949 14 0 251 17 no 0.666667 5 0.800000 0.004949 1.000000 42.200000 IGS_056 igs rbcL|accD rbcL-accD 57020 57851 0 832 LSC 0.003285 6 0 14 174 no 0.666667 5 0.800000 0.003285 1.000000 40.900000 accD gene accD accD 57852 59138 1 1287 LSC 0.009246 24 36 62 13 yes 1.000000 6 1.000000 0.009205 0.986014 54.200000 IGS_057 igs accD|psaI accD-psaI 59139 59664 0 526 LSC 0.004689 5 1 74 150 no 0.666667 5 0.800000 0.004692 1.000000 45.000000 psaI gene psaI psaI 59665 59766 1 102 LSC 0.000000 0 0 300 48 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 IGS_058 igs psaI|ycf4 psaI-ycf4 59767 60056 0 290 LSC 0.001149 1 1 300 209 no 0.166667 3 0.333333 0.001152 0.996552 38.200000 ycf4 gene ycf4 ycf4 60057 60611 1 555 LSC 0.002883 4 0 241 22 no 0.666667 5 0.800000 0.002883 1.000000 40.400000 IGS_059 igs ycf4|cemA ycf4-cemA 60612 61561 0 950 LSC 0.004491 10 0 72 41 no 1.000000 6 1.000000 0.004491 1.000000 50.200000 cemA gene cemA cemA 61562 62257 1 696 LSC 0.002682 4 0 108 7 no 0.166667 3 0.333333 0.002682 1.000000 30.600000 IGS_060 igs cemA|petA cemA-petA 62258 62389 0 132 LSC 0.013636 4 0 300 62 no 0.500000 4 0.750000 0.013636 1.000000 42.700000 petA gene petA petA 62390 63352 1 963 LSC 0.002215 4 0 43 300 no 0.166667 3 0.333333 0.002215 1.000000 32.900000 IGS_061 igs petA|psbJ petA-psbJ 63353 64252 0 900 LSC 0.006222 13 15 174 300 no 0.666667 5 0.800000 0.006296 0.987778 56.900000 psbJ gene psbJ psbJ 64253 64375 -1 123 LSC 0.000000 0 0 33 300 no 0.000000 1 0.000000 0.000000 1.000000 21.200000 IGS_062 igs psbJ|psbL psbJ-psbL 64376 64521 0 146 LSC 0.000000 0 0 156 167 no 0.000000 1 0.000000 0.000000 1.000000 30.400000 psbL gene psbL psbL 64522 64638 -1 117 LSC 0.000000 0 0 300 50 no 0.000000 1 0.000000 0.000000 1.000000 22.500000 IGS_063 igs psbL|psbF psbL-psbF 64639 64664 0 26 LSC 0.000000 0 0 300 24 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 psbF gene psbF psbF 64665 64784 -1 120 LSC 0.005000 1 0 300 300 no 0.000000 2 0.000000 0.005000 1.000000 37.000000 IGS_064 igs psbF|psbE psbF-psbE 64785 64793 0 9 LSC 0.000000 0 0 95 300 no 0.000000 1 0.000000 NA 1.000000 25.900000 psbE gene psbE psbE 64794 65045 -1 252 LSC 0.000000 0 0 104 70 no 0.000000 1 0.000000 0.000000 1.000000 24.000000 IGS_065 igs psbE|petL psbE-petL 65046 66134 0 1089 LSC 0.003918 9 0 300 38 no 0.166667 3 0.333333 0.003918 1.000000 33.800000 petL gene petL petL 66135 66230 1 96 LSC 0.003472 1 0 300 81 no 0.166667 2 0.500000 0.003472 1.000000 30.800000 IGS_066 igs petL|petG petL-petG 66231 66406 0 176 LSC 0.007576 4 12 57 112 no 0.666667 5 0.800000 0.007825 1.000000 47.600000 petG gene petG petG 66407 66520 1 114 LSC 0.002924 1 0 25 34 no 0.166667 2 0.500000 0.002924 1.000000 26.200000 IGS_067 igs petG|trnW-CCA petG-trnW-CCA 66521 66657 0 137 LSC 0.012165 5 2 1 102 no 0.666667 5 0.800000 0.012255 0.992701 42.900000 trnW-CCA tRNA trnW-CCA trnW-CCA 66658 66731 -1 74 LSC 0.000000 0 0 31 28 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_068 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 66732 66879 0 148 LSC 0.010360 4 0 105 79 no 0.500000 4 0.750000 0.010360 1.000000 42.100000 trnP-UGG tRNA trnP-UGG trnP-UGG 66880 66953 -1 74 LSC 0.000000 0 0 35 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_069 igs trnP-UGG|psaJ trnP-UGG-psaJ 66954 67372 0 419 LSC 0.011138 11 9 109 300 yes 1.000000 6 1.000000 0.011347 0.978520 58.500000 psaJ gene psaJ psaJ 67373 67507 1 135 LSC 0.000000 0 0 26 205 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_070 igs psaJ|rpl33 psaJ-rpl33 67508 68011 0 504 LSC 0.003844 5 2 161 223 no 0.666667 5 0.800000 0.003847 0.998016 50.900000 rpl33 gene rpl33 rpl33 68012 68212 1 201 LSC 0.000000 0 0 36 22 no 0.000000 1 0.000000 0.000000 1.000000 20.400000 IGS_071 igs rpl33|rps18 rpl33-rps18 68213 68731 0 519 LSC 0.013231 14 7 237 78 yes 1.000000 6 1.000000 0.013333 1.000000 58.800000 rps18 gene rps18 rps18 68732 69046 1 315 LSC 0.005503 4 0 66 31 no 0.333333 4 0.500000 0.005503 1.000000 31.700000 IGS_072 igs rps18|rpl20 rps18-rpl20 69047 69286 0 240 LSC 0.011389 6 0 64 49 no 0.666667 5 0.800000 0.011389 1.000000 43.200000 rpl20 gene rpl20 rpl20 69287 69643 -1 357 LSC 0.004295 3 0 24 32 no 0.166667 3 0.333333 0.004295 1.000000 27.800000 IGS_073 igs rpl20|rps12 rpl20-rps12 69644 70408 0 765 LSC 0.002789 5 0 130 127 no 0.666667 5 0.800000 0.002789 1.000000 49.100000 rps12_part1 gene rps12 rps12 70409 70522 -1 114 LSC 0.000000 0 0 106 13 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_074 igs rps12|clpP rps12-clpP 70523 70898 0 376 LSC 0.096726 59 132 220 4 yes 1.000000 6 1.000000 0.073364 0.813830 72.500000 clpP gene clpP clpP 70899 72310 -1 1412 LSC 0.023246 66 115 23 1 no 0.500000 4 0.750000 0.023331 0.918555 54.700000 IGS_075 igs clpP|psbB clpP-psbB 72311 72717 0 407 LSC 0.009992 10 0 17 80 no 0.500000 4 0.750000 0.009992 1.000000 39.200000 psbB gene psbB psbB 72718 74244 1 1527 LSC 0.001659 6 0 63 4 no 0.500000 4 0.750000 0.001659 1.000000 35.900000 IGS_076 igs psbB|psbT psbB-psbT 74245 74405 0 161 LSC 0.014079 4 0 64 10 no 0.166667 3 0.333333 0.014079 1.000000 32.100000 psbT gene psbT psbT 74406 74513 1 108 LSC 0.005556 1 0 22 21 no 0.000000 2 0.000000 0.005556 1.000000 24.000000 IGS_077 igs psbT|psbN psbT-psbN 74514 74573 0 60 LSC 0.027778 5 0 97 153 no 0.333333 3 0.666667 0.027778 1.000000 55.200000 psbN gene psbN psbN 74574 74705 -1 132 LSC 0.000000 0 0 20 21 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_078 igs psbN|psbH psbN-psbH 74706 74809 0 104 LSC 0.014744 3 9 152 144 no 0.166667 3 0.333333 0.016140 0.913462 46.700000 psbH gene psbH psbH 74810 75031 1 222 LSC 0.002703 1 0 17 15 no 0.000000 2 0.000000 0.002703 1.000000 21.700000 IGS_079 igs psbH|petB psbH-petB 75032 75165 0 134 LSC 0.011940 4 0 77 116 no 0.666667 5 0.800000 0.011940 1.000000 46.100000 petB gene petB petB 75166 76604 1 1439 LSC 0.004123 12 2 33 172 no 0.666667 5 0.800000 0.003986 1.000000 43.000000 IGS_080 igs petB|petD petB-petD 76605 76823 0 219 LSC 0.002740 1 2 204 198 no 0.166667 3 0.333333 0.002765 0.990868 39.400000 petD gene petD petD 76824 77983 1 1160 LSC 0.002241 7 0 46 29 no 0.666667 5 0.800000 0.002241 1.000000 41.400000 IGS_081 igs petD|rpoA petD-rpoA 77984 78148 0 165 LSC 0.007677 3 0 167 220 no 0.500000 4 0.750000 0.007677 1.000000 46.400000 rpoA gene rpoA rpoA 78149 79135 -1 987 LSC 0.003985 7 0 32 20 no 0.166667 3 0.333333 0.003985 1.000000 32.300000 IGS_082 igs rpoA|rps11 rpoA-rps11 79136 79215 0 80 LSC 0.016667 2 0 86 63 no 0.333333 4 0.500000 0.016667 1.000000 40.400000 rps11 gene rps11 rps11 79216 79632 -1 417 LSC 0.006555 5 0 17 165 no 0.166667 3 0.333333 0.006555 1.000000 30.000000 IGS_083 igs rps11|rpl36 rps11-rpl36 79633 79753 0 121 LSC 0.000000 0 0 11 44 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 rpl36 gene rpl36 rpl36 79754 79867 -1 114 LSC 0.010526 2 0 132 28 no 0.000000 2 0.000000 0.010526 1.000000 27.800000 IGS_084 igs rpl36|rps8 rpl36-rps8 79868 80378 0 511 LSC 0.009654 11 2 58 72 no 1.000000 6 1.000000 0.009673 1.000000 53.700000 rps8 gene rps8 rps8 80379 80783 -1 405 LSC 0.006584 5 0 125 36 no 0.166667 3 0.333333 0.006584 1.000000 31.300000 IGS_085 igs rps8|rpl14 rps8-rpl14 80784 80943 0 160 LSC 0.005451 2 2 8 88 no 0.333333 4 0.500000 0.005469 0.993750 30.900000 rpl14 gene rpl14 rpl14 80944 81312 -1 369 LSC 0.002710 3 1 54 133 no 0.500000 4 0.750000 0.002714 0.997290 36.100000 IGS_086 igs rpl14|rpl16 rpl14-rpl16 81313 81409 0 97 LSC 0.000000 0 0 132 36 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 rpl16 gene rpl16 rpl16 81410 81865 -1 456 LSC 0.008333 7 0 229 108 no 0.666667 5 0.800000 0.008333 1.000000 48.300000 IGS_087 igs rpl16|rps3 rpl16-rps3 81866 82019 0 154 LSC 0.005628 2 0 218 300 no 0.166667 3 0.333333 0.005628 1.000000 41.000000 rps3 gene rps3 rps3 82020 82676 -1 657 LSC 0.001826 3 0 12 90 no 0.166667 3 0.333333 0.001826 1.000000 30.400000 IGS_088 igs rps3|rpl22 rps3-rpl22 82677 82759 0 83 LSC 0.000000 0 0 152 7 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 rpl22 gene rpl22 rpl22 82760 83074 -1 315 LSC 0.004868 3 0 235 18 no 0.166667 3 0.333333 0.004868 1.000000 26.900000 IGS_089 igs rpl22|rpl2 rpl22-rpl2 83075 83509 0 435 LSC 0.005824 6 0 24 32 no 0.333333 4 0.500000 0.005824 1.000000 34.000000 rpl2 gene rpl2 rpl2 83510 85014 -1 1505 IRb 0.000842 3 0 27 131 no 0.166667 3 0.333333 0.000842 1.000000 30.800000 IGS_090 igs rpl2|rpl32 rpl2-rpl32 85015 85032 0 18 IRb 0.000000 0 0 83 113 no 0.000000 1 0.000000 NA 1.000000 25.000000 rpl32 gene rpl32 rpl32 85033 85314 -1 282 IRb 0.001182 1 0 101 272 no 0.166667 2 0.500000 0.001182 1.000000 30.400000 IGS_091 igs rpl32|trnM-CAU rpl32-trnM-CAU 85315 85616 0 302 IRb 0.001987 1 78 168 147 no 0.166667 3 0.333333 0.002217 1.000000 39.200000 trnM-CAU tRNA trnM-CAU trnM-CAU 85617 85690 -1 74 IRb 0.000000 0 0 29 73 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_092 igs trnM-CAU|trnL-CAA trnM-CAU-trnL-CAA 85691 93142 0 7452 IRb 0.001843 28 30 103 300 no 1.000000 6 1.000000 0.001822 0.996779 46.900000 trnL-CAA tRNA trnL-CAA trnL-CAA 93143 93223 -1 81 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_093 igs trnL-CAA|ndhB trnL-CAA-ndhB 93224 93658 0 435 IRb 0.001533 2 11 300 300 no 0.333333 3 0.666667 0.001556 1.000000 47.100000 ndhB gene ndhB ndhB 93659 95877 -1 2219 IRb 0.000421 2 0 81 297 no 0.166667 3 0.333333 0.000421 1.000000 33.000000 IGS_094 igs ndhB|rps7 ndhB-rps7 95878 96195 0 318 IRb 0.011321 6 0 204 227 no 0.000000 2 0.000000 0.011321 1.000000 41.600000 rps7 gene rps7 rps7 96196 96663 -1 468 IRb 0.001282 1 0 13 300 no 0.000000 2 0.000000 0.001282 1.000000 24.100000 IGS_095 igs rps7|rps12 rps7-rps12 96664 96722 0 59 IRb 0.000000 0 0 240 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps12_part2 gene rps12 rps12 96723 96980 -1 258 IRb 0.000000 0 0 299 171 no 0.000000 1 0.000000 0.000000 1.000000 31.600000 IGS_096 igs rps12|trnV-GAC rps12-trnV-GAC 96981 98485 0 1505 IRb 0.001019 4 0 300 112 no 0.500000 4 0.750000 0.001019 1.000000 43.600000 trnV-GAC tRNA trnV-GAC trnV-GAC 98486 98557 1 72 IRb 0.000000 0 0 139 40 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_097 igs trnV-GAC|rrn16S trnV-GAC-rrn16S 98558 98779 0 222 IRb 0.010811 4 0 211 300 no 0.000000 2 0.000000 0.010811 1.000000 40.900000 rrn16S rRNA rrn16S rrn16S 98780 100270 1 1491 IRb 0.000000 0 0 39 106 no 0.000000 1 0.000000 0.000000 1.000000 27.900000 IGS_098 igs rrn16S|trnI rrn16S-trnI 100271 100567 0 297 IRb 0.002020 1 10 300 300 no 0.000000 2 0.000000 0.002091 0.966330 38.300000 trnI_part1 tRNA trnI trnI 100568 100599 1 32 IRb 0.000000 0 0 190 300 no 0.000000 1 0.000000 0.000000 1.000000 33.000000 trnI_part2 tRNA trnI trnI 101546 101585 1 40 IRb 0.000000 0 0 291 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_101 igs trnI|trnA-UGC trnI-trnA-UGC 101586 101652 0 67 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 101653 101689 1 37 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 102481 102515 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_104 igs trnA-UGC|rrn23S trnA-UGC-rrn23S 102516 102663 0 148 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 102664 105473 1 2810 IRb 0.000332 2 0 300 37 no 0.166667 3 0.333333 0.000332 1.000000 28.400000 IGS_105 igs rrn23S|rrn5S rrn23S-rrn5S 105474 105914 0 441 IRb 0.002116 2 0 28 91 no 0.166667 3 0.333333 0.002116 1.000000 28.400000 rrn5S rRNA rrn5S rrn5S 105915 106045 1 131 IRb 0.004580 1 0 300 300 no 0.000000 2 0.000000 0.004580 1.000000 36.800000 IGS_106 igs rrn5S|trnR-ACG rrn5S-trnR-ACG 106046 106287 0 242 IRb 0.000000 0 2 39 226 no 0.166667 2 0.500000 0.000000 0.991736 25.500000 trnR-ACG tRNA trnR-ACG trnR-ACG 106288 106361 1 74 IRb 0.000000 0 0 281 152 no 0.000000 1 0.000000 0.000000 1.000000 30.100000 IGS_107 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 106362 106967 0 606 IRb 0.003520 4 0 300 300 no 0.666667 5 0.800000 0.003520 1.000000 54.900000 trnN-GUU tRNA trnN-GUU trnN-GUU 106968 107039 -1 72 IRb 0.000000 0 0 300 251 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_108 igs trnN-GUU|rps15 trnN-GUU-rps15 107040 113495 0 6456 SSC 0.007488 108 143 300 300 yes 1.000000 6 1.000000 0.007027 0.988538 60.300000 rps15 gene rps15 rps15 113496 113768 1 273 SSC 0.000000 0 0 18 33 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 IGS_109 igs rps15|ndhH rps15-ndhH 113769 113871 0 103 SSC 0.003236 1 0 291 300 no 0.166667 2 0.500000 0.003236 1.000000 39.500000 ndhH gene ndhH ndhH 113872 115053 1 1182 SSC 0.001805 5 0 69 300 no 0.666667 5 0.800000 0.001805 1.000000 44.000000 IGS_110 igs ndhH|ndhA ndhH-ndhA 115054 115054 0 1 SSC 0.000000 0 0 197 300 no 0.000000 1 0.000000 NA 1.000000 33.500000 ndhA gene ndhA ndhA 115055 117204 1 2150 SSC 0.002729 12 19 198 206 no 0.666667 5 0.800000 0.002499 0.991628 53.800000 IGS_111 igs ndhA|ndhI ndhA-ndhI 117205 117285 0 81 SSC 0.000000 0 0 300 125 no 0.000000 1 0.000000 0.000000 1.000000 28.100000 ndhI gene ndhI ndhI 117286 117789 1 504 SSC 0.001852 2 0 300 159 no 0.166667 3 0.333333 0.001852 1.000000 39.400000 IGS_112 igs ndhI|ndhG ndhI-ndhG 117790 118200 0 411 SSC 0.003244 4 0 62 240 no 0.666667 5 0.800000 0.003244 1.000000 40.900000 ndhG gene ndhG ndhG 118201 118731 1 531 SSC 0.004018 4 0 19 189 no 0.166667 3 0.333333 0.004018 1.000000 30.900000 IGS_113 igs ndhG|ndhE ndhG-ndhE 118732 119017 0 286 SSC 0.017016 9 1 14 188 no 0.333333 4 0.500000 0.017038 1.000000 38.100000 ndhE gene ndhE ndhE 119018 119323 1 306 SSC 0.001089 1 0 3 2 no 0.166667 2 0.500000 0.001089 1.000000 23.000000 IGS_114 igs ndhE|psaC ndhE-psaC 119324 119549 0 226 SSC 0.006785 3 0 117 272 no 0.166667 3 0.333333 0.006785 1.000000 35.400000 psaC gene psaC psaC 119550 119795 1 246 SSC 0.000000 0 0 85 26 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_115 igs psaC|ndhD psaC-ndhD 119796 119937 0 142 SSC 0.011268 4 0 300 300 no 0.500000 4 0.750000 0.011268 1.000000 51.700000 ndhD gene ndhD ndhD 119938 121440 1 1503 SSC 0.001242 4 0 26 27 no 0.333333 4 0.500000 0.001242 1.000000 34.100000 IGS_116 igs ndhD|ccsA ndhD-ccsA 121441 121692 0 252 SSC 0.041005 21 0 56 11 yes 1.000000 6 1.000000 0.041005 1.000000 67.200000 ccsA gene ccsA ccsA 121693 122655 -1 963 SSC 0.004154 8 0 39 22 yes 0.333333 4 0.500000 0.004154 1.000000 35.800000 IGS_117 igs ccsA|trnL-UAG ccsA-trnL-UAG 122656 122741 0 86 SSC 0.017054 3 2 249 101 no 0.666667 5 0.800000 0.017274 1.000000 53.600000 trnL-UAG tRNA trnL-UAG trnL-UAG 122742 122821 -1 80 SSC 0.000000 0 0 36 21 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 IGS_118 igs trnL-UAG|ndhF trnL-UAG-ndhF 122822 125471 0 2650 SSC 0.011395 61 145 116 56 yes 1.000000 6 1.000000 0.008936 0.951321 58.100000 ndhF gene ndhF ndhF 125472 127691 1 2220 SSC 0.002763 13 0 254 6 no 0.666667 5 0.800000 0.002763 1.000000 38.400000 IGS_119 igs ndhF|trnN-GUU ndhF-trnN-GUU 127692 127960 0 269 IRa 0.002478 2 0 36 300 no 0.166667 2 0.500000 0.002478 1.000000 26.600000 trnN-GUU tRNA trnN-GUU trnN-GUU 127961 128032 1 72 IRa 0.000000 0 0 251 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_120 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 128033 128638 0 606 IRa 0.003520 4 0 300 300 no 0.666667 5 0.800000 0.003520 1.000000 54.900000 trnR-ACG tRNA trnR-ACG trnR-ACG 128639 128712 -1 74 IRa 0.000000 0 0 152 281 no 0.000000 1 0.000000 0.000000 1.000000 30.100000 IGS_121 igs trnR-ACG|rrn5S trnR-ACG-rrn5S 128713 128954 0 242 IRa 0.000000 0 2 226 39 no 0.166667 2 0.500000 0.000000 0.991736 25.500000 rrn5S rRNA rrn5S rrn5S 128955 129085 -1 131 IRa 0.004580 1 0 300 300 no 0.000000 2 0.000000 0.004580 1.000000 36.800000 IGS_122 igs rrn5S|rrn23S rrn5S-rrn23S 129086 129526 0 441 IRa 0.002116 2 0 91 28 no 0.166667 3 0.333333 0.002116 1.000000 28.400000 rrn23S rRNA rrn23S rrn23S 129527 132336 -1 2810 IRa 0.000332 2 0 37 300 no 0.166667 3 0.333333 0.000332 1.000000 28.400000 IGS_123 igs rrn23S|trnA-UGC rrn23S-trnA-UGC 132337 132509 0 173 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 132510 132541 -1 32 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 133311 133347 -1 37 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_126 igs trnA-UGC|trnI trnA-UGC-trnI 133348 133414 0 67 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 133415 133454 -1 40 IRa 0.000000 0 0 300 291 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part1 tRNA trnI trnI 134401 134432 -1 32 IRa 0.000000 0 0 300 190 no 0.000000 1 0.000000 0.000000 1.000000 33.000000 IGS_129 igs trnI|rrn16S trnI-rrn16S 134433 134729 0 297 IRa 0.002020 1 10 300 300 no 0.000000 2 0.000000 0.002091 0.966330 38.300000 rrn16S rRNA rrn16S rrn16S 134730 136220 -1 1491 IRa 0.000000 0 0 106 39 no 0.000000 1 0.000000 0.000000 1.000000 27.900000 IGS_130 igs rrn16S|trnV-GAC rrn16S-trnV-GAC 136221 136442 0 222 IRa 0.010811 4 0 300 211 no 0.000000 2 0.000000 0.010811 1.000000 40.900000 trnV-GAC tRNA trnV-GAC trnV-GAC 136443 136514 -1 72 IRa 0.000000 0 0 40 139 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_131 igs trnV-GAC|rps12 trnV-GAC-rps12 136515 138019 0 1505 IRa 0.001019 4 0 112 300 no 0.500000 4 0.750000 0.001019 1.000000 43.600000 rps12_part2 gene rps12 rps12 138020 138277 1 258 IRa 0.000000 0 0 171 299 no 0.000000 1 0.000000 0.000000 1.000000 31.600000 IGS_132 igs rps12|rps7 rps12-rps7 138278 138336 0 59 IRa 0.000000 0 0 300 240 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 138337 138804 1 468 IRa 0.001282 1 0 300 13 no 0.000000 2 0.000000 0.001282 1.000000 24.100000 IGS_133 igs rps7|ndhB rps7-ndhB 138805 139122 0 318 IRa 0.011321 6 0 227 204 no 0.000000 2 0.000000 0.011321 1.000000 41.600000 ndhB gene ndhB ndhB 139123 141341 1 2219 IRa 0.000421 2 0 297 81 no 0.166667 3 0.333333 0.000421 1.000000 33.000000 IGS_134 igs ndhB|trnL-CAA ndhB-trnL-CAA 141342 141776 0 435 IRa 0.001533 2 11 300 300 no 0.333333 3 0.666667 0.001556 1.000000 47.100000 trnL-CAA tRNA trnL-CAA trnL-CAA 141777 141857 1 81 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_135 igs trnL-CAA|trnM-CAU trnL-CAA-trnM-CAU 141858 149309 0 7452 IRa 0.001843 28 30 300 103 no 1.000000 6 1.000000 0.001822 0.996779 46.900000 trnM-CAU tRNA trnM-CAU trnM-CAU 149310 149383 1 74 IRa 0.000000 0 0 73 29 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_136 igs trnM-CAU|rpl32 trnM-CAU-rpl32 149384 149685 0 302 IRa 0.001987 1 56 147 168 no 0.166667 3 0.333333 0.002138 1.000000 39.500000 rpl32 gene rpl32 rpl32 149686 149967 1 282 IRa 0.001182 1 0 272 101 no 0.166667 2 0.500000 0.001182 1.000000 30.400000 IGS_137 igs rpl32|rpl2 rpl32-rpl2 149968 149985 0 18 IRa 0.000000 0 0 113 83 no 0.000000 1 0.000000 NA 1.000000 25.000000 rpl2 gene rpl2 rpl2 149986 151490 1 1505 IRa 0.000842 3 0 131 27 no 0.166667 3 0.333333 0.000842 1.000000 30.800000 IGS_138 igs rpl2|trnH-GUG rpl2-trnH-GUG 151491 14 0 68 IRa 0.008824 1 19 32 113 no 0.333333 4 0.500000 0.010149 1.000000 37.600000