feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score psbA gene psbA psbA 1 1062 -1 1062 LSC 0.000753 2 0 245 106 no 0.200000 2 0.500000 0.000753 1.000000 37.300000 IGS_001 igs psbA|trnK-UUU psbA-trnK-UUU 1063 1524 0 462 LSC 0.005195 6 0 300 293 no 1.000000 5 1.000000 0.005195 1.000000 59.800000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 1525 1559 -1 35 LSC 0.000000 0 0 214 258 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_002 igs trnK-UUU|matK trnK-UUU-matK 1560 1747 0 188 LSC 0.000000 0 0 249 70 no 0.000000 1 0.000000 0.000000 1.000000 24.000000 matK gene matK matK 1748 3292 -1 1545 LSC 0.003107 11 0 300 49 no 1.000000 5 1.000000 0.003107 1.000000 49.600000 IGS_003 igs matK|trnK-UUU matK-trnK-UUU 3293 4077 0 785 LSC 0.002548 5 0 88 44 no 1.000000 5 1.000000 0.002548 1.000000 49.000000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 4078 4114 -1 37 LSC 0.000000 0 0 152 7 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_004 igs trnK-UUU|chlB trnK-UUU-chlB 4115 4908 0 794 LSC 0.007809 15 13 189 47 no 1.000000 5 1.000000 0.007862 1.000000 55.100000 chlB gene chlB chlB 4909 6453 -1 1545 LSC 0.002460 9 0 35 121 no 1.000000 5 1.000000 0.002460 1.000000 48.100000 IGS_005 igs chlB|trnQ-UUG chlB-trnQ-UUG 6454 6661 0 208 LSC 0.003846 2 0 300 116 no 0.200000 2 0.500000 0.003846 1.000000 34.100000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 6662 6733 -1 72 LSC 0.000000 0 0 46 44 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 IGS_006 igs trnQ-UUG|psbK trnQ-UUG-psbK 6734 7095 0 362 LSC 0.005525 4 18 118 126 no 1.000000 5 1.000000 0.005727 1.000000 57.100000 psbK gene psbK psbK 7096 7275 1 180 LSC 0.006667 2 0 184 38 no 0.200000 3 0.333333 0.006667 1.000000 29.700000 IGS_007 igs psbK|psbI psbK-psbI 7276 7753 0 478 LSC 0.005907 7 4 46 14 no 1.000000 5 1.000000 0.005907 0.991632 47.500000 psbI gene psbI psbI 7754 7864 1 111 LSC 0.003604 1 0 190 6 no 0.200000 2 0.500000 0.003604 1.000000 25.700000 IGS_008 igs psbI|trnS-GCU psbI-trnS-GCU 7865 7939 0 75 IRb 0.034667 5 9 96 122 yes 0.600000 4 0.750000 0.037577 1.000000 66.500000 trnS-GCU tRNA trnS-GCU trnS-GCU 7940 8027 -1 88 IRb 0.000000 0 0 29 34 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_009 igs trnS-GCU|ycf12 trnS-GCU-ycf12 8028 8519 0 492 IRb 0.008130 9 5 117 128 no 1.000000 5 1.000000 0.008172 1.000000 57.400000 ycf12 gene ycf12 ycf12 8520 8621 1 102 IRb 0.000000 0 0 30 26 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_010 igs ycf12|trnG-UCC ycf12-trnG-UCC 8622 8805 0 184 IRb 0.002174 1 0 132 92 no 0.200000 2 0.500000 0.002174 1.000000 31.100000 trnG-UCC_part1 tRNA trnG-UCC trnG-UCC 8806 8828 1 23 IRb 0.000000 0 0 157 69 no 0.000000 1 0.000000 0.000000 1.000000 23.900000 IGS_011 igs trnG-UCC|trnG-UCC trnG-UCC-trnG-UCC 8829 9620 0 792 SSC 0.004040 7 25 180 66 no 1.000000 5 1.000000 0.004130 1.000000 55.200000 trnG-UCC_part2 tRNA trnG-UCC trnG-UCC 9621 9668 1 48 SSC 0.000000 0 0 51 18 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 IGS_012 igs trnG-UCC|trnR-UCU trnG-UCC-trnR-UCU 9669 9842 0 174 SSC 0.013793 6 0 99 26 no 0.400000 3 0.666667 0.013793 1.000000 38.700000 trnR-UCU tRNA trnR-UCU trnR-UCU 9843 9914 1 72 SSC 0.005556 1 0 63 268 no 0.200000 2 0.500000 0.005556 1.000000 31.500000 IGS_013 igs trnR-UCU|atpA trnR-UCU-atpA 9915 10008 0 94 SSC 0.000000 0 0 45 174 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 atpA gene atpA atpA 10009 11532 -1 1524 SSC 0.001706 6 0 139 134 no 0.600000 4 0.750000 0.001706 1.000000 47.500000 IGS_014 igs atpA|atpF atpA-atpF 11533 11579 0 47 SSC 0.000000 0 0 257 87 no 0.000000 1 0.000000 0.000000 1.000000 25.300000 atpF gene atpF atpF 11580 12908 -1 1329 SSC 0.001956 6 1 300 182 no 1.000000 5 1.000000 0.001957 1.000000 58.900000 IGS_015 igs atpF|atpH atpF-atpH 12909 13209 0 301 SSC 0.002658 2 0 178 222 no 0.400000 3 0.666667 0.002658 1.000000 41.600000 atpH gene atpH atpH 13210 13455 -1 246 SSC 0.001626 1 0 90 44 no 0.200000 2 0.500000 0.001626 1.000000 27.000000 IGS_016 igs atpH|atpI atpH-atpI 13456 14129 0 674 SSC 0.005143 8 51 23 57 no 1.000000 5 1.000000 0.004680 1.000000 54.600000 atpI gene atpI atpI 14130 14876 -1 747 SSC 0.001071 2 0 88 85 no 0.400000 3 0.666667 0.001071 1.000000 39.700000 IGS_017 igs atpI|rps2 atpI-rps2 14877 15190 0 314 SSC 0.003185 2 131 300 102 no 0.600000 4 0.750000 0.004097 1.000000 43.800000 rps2 gene rps2 rps2 15191 15889 -1 699 SSC 0.001144 2 0 193 164 no 0.400000 3 0.666667 0.001144 1.000000 45.700000 IGS_018 igs rps2|rpoC2 rps2-rpoC2 15890 16109 0 220 SSC 0.005455 3 0 29 47 no 0.200000 2 0.500000 0.005455 1.000000 28.800000 rpoC2 gene rpoC2 rpoC2 16110 19721 -1 3612 SSC 0.001384 12 9 40 198 no 1.000000 5 1.000000 0.001385 1.000000 44.000000 IGS_019 igs rpoC2|rpoC1 rpoC2-rpoC1 19722 19838 0 117 SSC 0.000000 0 0 18 81 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 rpoC1 gene rpoC1 rpoC1 19839 22601 -1 2763 SSC 0.002103 14 5 135 7 no 1.000000 5 1.000000 0.002103 0.998190 43.400000 IGS_020 igs rpoC1|rpoB rpoC1-rpoB 22602 22623 0 22 SSC 0.018182 1 0 300 300 no 0.200000 2 0.500000 0.018182 1.000000 51.400000 rpoB gene rpoB rpoB 22624 25851 -1 3228 SSC 0.001177 9 0 14 26 no 1.000000 5 1.000000 0.001177 1.000000 42.200000 IGS_021 igs rpoB|trnC-GCA rpoB-trnC-GCA 25852 26268 0 417 SSC 0.005392 5 9 65 121 no 1.000000 5 1.000000 0.005392 0.978417 50.600000 trnC-GCA tRNA trnC-GCA trnC-GCA 26269 26339 1 71 SSC 0.000000 0 0 239 50 no 0.000000 1 0.000000 0.000000 1.000000 22.500000 IGS_022 igs trnC-GCA|petN trnC-GCA-petN 26340 26661 0 322 SSC 0.002484 2 0 300 281 no 0.400000 3 0.666667 0.002484 1.000000 43.600000 petN gene petN petN 26662 26751 1 90 SSC 0.000000 0 0 80 191 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 IGS_023 igs petN|psbM petN-psbM 26752 27495 0 744 SSC 0.006331 11 49 170 300 yes 1.000000 5 1.000000 0.006331 0.934140 65.000000 psbM gene psbM psbM 27496 27591 -1 96 SSC 0.000000 0 0 19 222 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_024 igs psbM|trnD-GUC psbM-trnD-GUC 27592 28529 0 938 SSC 0.007001 14 104 115 213 yes 1.000000 5 1.000000 0.006895 1.000000 62.900000 trnD-GUC tRNA trnD-GUC trnD-GUC 28530 28603 -1 74 SSC 0.000000 0 0 6 139 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_025 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 28604 28883 0 280 SSC 0.002190 1 6 80 248 no 0.200000 3 0.333333 0.002190 0.978571 31.800000 trnY-GUA tRNA trnY-GUA trnY-GUA 28884 28967 -1 84 SSC 0.000000 0 0 140 164 no 0.000000 1 0.000000 0.000000 1.000000 29.200000 IGS_026 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 28968 29029 0 62 SSC 0.000000 0 0 224 102 no 0.000000 1 0.000000 0.000000 1.000000 26.400000 trnE-UUC tRNA trnE-UUC trnE-UUC 29030 29102 -1 73 SSC 0.000000 0 0 286 29 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_027 igs trnE-UUC|trnT-GGU trnE-UUC-trnT-GGU 29103 29814 0 712 SSC 0.005899 10 0 300 84 no 1.000000 5 1.000000 0.005899 1.000000 54.500000 trnT-GGU tRNA trnT-GGU trnT-GGU 29815 29886 1 72 SSC 0.000000 0 0 82 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_028 igs trnT-GGU|trnH-GUG trnT-GGU-trnH-GUG 29887 30009 0 123 SSC 0.019512 6 1 154 130 yes 1.000000 5 1.000000 0.019659 0.991870 62.900000 trnH-GUG tRNA trnH-GUG trnH-GUG 30010 30084 -1 75 SSC 0.000000 0 0 19 55 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_029 igs trnH-GUG|trnV-UAC trnH-GUG-trnV-UAC 30085 31756 0 1672 SSC 0.008703 32 383 94 192 yes 1.000000 5 1.000000 0.008409 0.998206 61.400000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 31757 31793 -1 37 SSC 0.000000 0 0 30 155 no 0.000000 1 0.000000 0.000000 1.000000 21.000000 IGS_030 igs trnV-UAC|trnV-UAC trnV-UAC-trnV-UAC 31794 32340 0 547 SSC 0.002194 3 6 67 114 no 0.600000 4 0.750000 0.002200 1.000000 43.100000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 32341 32379 -1 39 SSC 0.000000 0 0 45 75 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 IGS_031 igs trnV-UAC|trnM-CAU trnV-UAC-trnM-CAU 32380 32572 0 193 SSC 0.004145 2 0 84 85 no 0.400000 3 0.666667 0.004145 1.000000 35.700000 trnM-CAU tRNA trnM-CAU trnM-CAU 32573 32645 1 73 SSC 0.000000 0 0 42 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_032 igs trnM-CAU|atpE trnM-CAU-atpE 32646 32757 0 112 SSC 0.029630 8 4 115 14 no 0.400000 3 0.666667 0.029630 0.964286 52.700000 atpE gene atpE atpE 32758 33171 -1 414 SSC 0.001932 2 0 76 111 no 0.400000 3 0.666667 0.001932 1.000000 35.800000 IGS_033 igs atpE|atpB atpE-atpB 33172 33199 0 28 SSC 0.000000 0 0 288 83 no 0.000000 1 0.000000 0.000000 1.000000 25.000000 atpB gene atpB atpB 33200 34663 -1 1464 SSC 0.001776 6 0 300 14 no 0.600000 4 0.750000 0.001776 1.000000 38.600000 IGS_034 igs atpB|rbcL atpB-rbcL 34664 35608 0 945 SSC 0.008783 18 98 64 245 no 1.000000 5 1.000000 0.008126 1.000000 60.400000 rbcL gene rbcL rbcL 35609 37036 1 1428 SSC 0.002801 8 0 144 52 no 0.600000 4 0.750000 0.002801 1.000000 42.100000 IGS_035 igs rbcL|accD rbcL-accD 37037 37662 0 626 SSC 0.012460 18 31 82 90 yes 1.000000 5 1.000000 0.012661 1.000000 65.000000 accD gene accD accD 37663 38919 1 1257 SSC 0.012039 32 24 95 82 yes 1.000000 5 1.000000 0.009970 0.995227 60.600000 IGS_036 igs accD|psaI accD-psaI 38920 39202 0 283 SSC 0.007774 4 0 291 192 no 0.600000 4 0.750000 0.007774 1.000000 49.700000 psaI gene psaI psaI 39203 39334 1 132 SSC 0.000000 0 0 102 60 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 IGS_037 igs psaI|ycf4 psaI-ycf4 39335 39851 0 517 SSC 0.003095 4 20 234 143 no 0.600000 4 0.750000 0.003173 1.000000 52.000000 ycf4 gene ycf4 ycf4 39852 40406 1 555 SSC 0.003604 5 0 63 18 no 0.600000 4 0.750000 0.003604 1.000000 39.400000 IGS_038 igs ycf4|cemA ycf4-cemA 40407 41250 0 844 SSC 0.007007 13 143 58 300 no 1.000000 5 1.000000 0.007152 0.997630 58.300000 cemA gene cemA cemA 41251 42033 1 783 SSC 0.002043 4 0 42 1 no 0.600000 4 0.750000 0.002043 1.000000 37.900000 IGS_039 igs cemA|petA cemA-petA 42034 42251 0 218 SSC 0.001835 1 0 75 300 no 0.200000 2 0.500000 0.001835 1.000000 29.500000 petA gene petA petA 42252 43211 1 960 SSC 0.001458 3 0 216 109 no 0.200000 3 0.333333 0.001458 1.000000 38.000000 IGS_040 igs petA|psbJ petA-psbJ 43212 43930 0 719 SSC 0.007789 13 31 210 178 yes 1.000000 5 1.000000 0.007897 1.000000 68.000000 psbJ gene psbJ psbJ 43931 44053 -1 123 SSC 0.000000 0 0 13 55 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_041 igs psbJ|psbL psbJ-psbL 44054 44171 0 118 SSC 0.010169 3 0 136 199 no 0.400000 3 0.666667 0.010169 1.000000 44.200000 psbL gene psbL psbL 44172 44288 -1 117 SSC 0.000000 0 0 27 82 no 0.000000 1 0.000000 0.000000 1.000000 20.800000 IGS_042 igs psbL|psbF psbL-psbF 44289 44314 0 26 SSC 0.000000 0 0 144 56 no 0.000000 1 0.000000 0.000000 1.000000 22.900000 psbF gene psbF psbF 44315 44434 -1 120 SSC 0.003333 1 0 170 300 no 0.200000 2 0.500000 0.003333 1.000000 37.800000 IGS_043 igs psbF|psbE psbF-psbE 44435 44443 0 9 SSC 0.000000 0 0 63 300 no 0.000000 1 0.000000 NA 1.000000 23.500000 psbE gene psbE psbE 44444 44695 -1 252 SSC 0.000000 0 0 72 170 no 0.000000 1 0.000000 0.000000 1.000000 24.100000 IGS_044 igs psbE|petL psbE-petL 44696 45998 0 1303 SSC 0.004862 14 69 300 96 no 1.000000 5 1.000000 0.004862 0.947045 58.700000 petL gene petL petL 45999 46133 1 135 SSC 0.008889 3 0 21 44 no 0.600000 4 0.750000 0.008889 1.000000 38.400000 IGS_045 igs petL|petG petL-petG 46134 46285 0 152 SSC 0.007895 3 0 25 300 no 0.400000 3 0.666667 0.007895 1.000000 34.100000 petG gene petG petG 46286 46399 1 114 SSC 0.000000 0 0 74 186 no 0.000000 1 0.000000 0.000000 1.000000 24.300000 IGS_046 igs petG|trnW-CCA petG-trnW-CCA 46400 46527 0 128 SSC 0.000000 0 0 188 58 no 0.000000 1 0.000000 0.000000 1.000000 23.100000 trnW-CCA tRNA trnW-CCA trnW-CCA 46528 46601 -1 74 SSC 0.005405 1 0 300 96 no 0.200000 2 0.500000 0.005405 1.000000 33.800000 IGS_047 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 46602 46768 0 167 SSC 0.009581 4 0 15 195 no 0.400000 3 0.666667 0.009581 1.000000 34.700000 trnP-UGG tRNA trnP-UGG trnP-UGG 46769 46842 -1 74 SSC 0.000000 0 0 6 121 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_048 igs trnP-UGG|psaJ trnP-UGG-psaJ 46843 47150 0 308 SSC 0.002597 2 0 80 119 no 0.200000 2 0.500000 0.002597 1.000000 30.600000 psaJ gene psaJ psaJ 47151 47327 1 177 SSC 0.006780 3 0 126 62 no 0.400000 3 0.666667 0.006780 1.000000 36.100000 IGS_049 igs psaJ|rpl33 psaJ-rpl33 47328 47516 0 189 SSC 0.010582 5 3 1 70 no 1.000000 5 1.000000 0.010676 1.000000 47.500000 rpl33 gene rpl33 rpl33 47517 47723 1 207 SSC 0.007729 4 0 4 14 no 0.400000 3 0.666667 0.007729 1.000000 32.400000 IGS_050 igs rpl33|rps18 rpl33-rps18 47724 47851 0 128 SSC 0.003125 1 0 36 270 no 0.200000 2 0.500000 0.003125 1.000000 27.600000 rps18 gene rps18 rps18 47852 48112 1 261 SSC 0.000000 0 0 113 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_051 igs rps18|rpl20 rps18-rpl20 48113 48372 0 260 SSC 0.007692 5 0 300 83 no 0.600000 4 0.750000 0.007692 1.000000 42.100000 rpl20 gene rpl20 rpl20 48373 48720 -1 348 SSC 0.002299 2 0 110 161 no 0.400000 3 0.666667 0.002299 1.000000 37.300000 IGS_052 igs rpl20|rps12 rpl20-rps12 48721 49422 0 702 SSC 0.001709 3 0 5 300 no 0.400000 3 0.666667 0.001709 1.000000 34.200000 rps12_part1 gene rps12 rps12 49423 49536 -1 114 SSC 0.000000 0 0 60 300 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 IGS_053 igs rps12|clpP rps12-clpP 49537 49701 0 165 SSC 0.000000 0 0 174 300 no 0.000000 1 0.000000 0.000000 1.000000 31.800000 clpP gene clpP clpP 49702 50292 -1 591 SSC 0.000677 1 0 300 57 no 0.200000 2 0.500000 0.000677 1.000000 33.400000 IGS_054 igs clpP|ycf12 clpP-ycf12 50293 50710 0 418 IRa 0.014115 14 0 29 132 no 1.000000 5 1.000000 0.014115 1.000000 52.700000 ycf12 gene ycf12 ycf12 50711 50812 -1 102 IRa 0.000000 0 0 26 30 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_055 igs ycf12|trnS-GCU ycf12-trnS-GCU 50813 51304 0 492 IRa 0.008130 9 5 128 117 no 1.000000 5 1.000000 0.008172 1.000000 57.400000 trnS-GCU tRNA trnS-GCU trnS-GCU 51305 51392 1 88 IRa 0.000000 0 0 34 29 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_056 igs trnS-GCU|psbB trnS-GCU-psbB 51393 51784 0 392 LSC 0.005277 5 13 122 47 no 0.600000 4 0.750000 0.005277 0.966837 42.300000 psbB gene psbB psbB 51785 53311 1 1527 LSC 0.001048 4 0 45 94 no 0.600000 4 0.750000 0.001048 1.000000 40.400000 IGS_057 igs psbB|psbT psbB-psbT 53312 53385 0 74 LSC 0.000000 0 0 300 20 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 psbT gene psbT psbT 53386 53493 1 108 LSC 0.012963 3 0 300 300 no 0.600000 4 0.750000 0.012963 1.000000 54.300000 IGS_058 igs psbT|psbN psbT-psbN 53494 53574 0 81 LSC 0.000000 0 0 39 300 no 0.000000 1 0.000000 0.000000 1.000000 21.700000 psbN gene psbN psbN 53575 53706 -1 132 LSC 0.000000 0 0 120 300 no 0.000000 1 0.000000 0.000000 1.000000 27.700000 IGS_059 igs psbN|psbH psbN-psbH 53707 53785 0 79 LSC 0.000000 0 0 252 255 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbH gene psbH psbH 53786 54019 1 234 LSC 0.000000 0 0 300 21 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 IGS_060 igs psbH|petB psbH-petB 54020 54162 0 143 LSC 0.002797 1 5 300 208 no 0.200000 3 0.333333 0.002848 1.000000 43.600000 petB_part1 gene petB petB 54163 54168 1 6 LSC 0.000000 0 0 121 202 no 0.000000 1 0.000000 NA 1.000000 27.800000 IGS_061 igs petB|petB petB-petB 54169 54988 0 820 LSC 0.002927 6 22 127 148 no 1.000000 5 1.000000 0.002995 0.978049 58.100000 petB_part2 gene petB petB 54989 55630 1 642 LSC 0.002181 3 0 76 1 no 0.600000 4 0.750000 0.002181 1.000000 37.900000 IGS_062 igs petB|petD petB-petD 55631 55850 0 220 LSC 0.005455 3 1 276 300 no 1.000000 5 1.000000 0.005477 0.995455 57.100000 petD_part1 gene petD petD 55851 55859 1 9 LSC 0.000000 0 0 95 300 no 0.000000 1 0.000000 NA 1.000000 25.900000 IGS_063 igs petD|petD petD-petD 55860 56557 0 698 LSC 0.002292 4 0 104 300 no 0.600000 4 0.750000 0.002292 1.000000 45.800000 petD_part2 gene petD petD 56558 57076 1 519 LSC 0.001927 2 0 99 300 no 0.400000 3 0.666667 0.001927 1.000000 39.600000 IGS_064 igs petD|rpoA petD-rpoA 57077 57284 0 208 LSC 0.000000 0 0 23 114 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 rpoA gene rpoA rpoA 57285 58295 -1 1011 LSC 0.001583 4 0 231 300 no 0.600000 4 0.750000 0.001583 1.000000 52.500000 IGS_065 igs rpoA|rps11 rpoA-rps11 58296 58357 0 62 LSC 0.000000 0 0 300 285 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps11 gene rps11 rps11 58358 58750 -1 393 LSC 0.002036 2 0 300 29 no 0.400000 3 0.666667 0.002036 1.000000 31.900000 IGS_066 igs rps11|rpl36 rps11-rpl36 58751 58832 0 82 LSC 0.009756 2 0 48 206 no 0.200000 2 0.500000 0.009756 1.000000 33.500000 rpl36 gene rpl36 rpl36 58833 58946 -1 114 LSC 0.000000 0 0 29 92 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_067 igs rpl36|infA rpl36-infA 58947 59044 0 98 LSC 0.004082 1 0 143 300 no 0.200000 2 0.500000 0.004082 1.000000 36.300000 infA gene infA infA 59045 59281 -1 237 LSC 0.000000 0 0 5 300 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_068 igs infA|rps8 infA-rps8 59282 59426 0 145 LSC 0.000000 0 1 242 300 no 0.000000 2 0.000000 0.000000 0.993103 34.400000 rps8 gene rps8 rps8 59427 59825 -1 399 LSC 0.000000 0 0 300 25 no 0.000000 1 0.000000 0.000000 1.000000 22.700000 IGS_069 igs rps8|rpl14 rps8-rpl14 59826 59970 0 145 LSC 0.002759 1 0 300 185 no 0.200000 2 0.500000 0.002759 1.000000 38.500000 rpl14 gene rpl14 rpl14 59971 60339 -1 369 LSC 0.001084 1 0 119 51 no 0.200000 2 0.500000 0.001084 1.000000 28.600000 IGS_070 igs rpl14|rpl16 rpl14-rpl16 60340 60463 0 124 LSC 0.006452 2 0 183 117 no 0.400000 3 0.666667 0.006452 1.000000 39.900000 rpl16_part2 gene rpl16 rpl16 60464 60859 -1 396 LSC 0.002020 2 0 7 300 no 0.400000 3 0.666667 0.002020 1.000000 30.300000 IGS_071 igs rpl16|rpl16 rpl16-rpl16 60860 61735 0 876 LSC 0.004338 9 5 55 300 no 1.000000 5 1.000000 0.004349 1.000000 51.800000 rpl16_part1 gene rpl16 rpl16 61736 61744 -1 9 LSC 0.000000 0 0 145 297 no 0.000000 1 0.000000 NA 1.000000 29.600000 IGS_072 igs rpl16|rps3 rpl16-rps3 61745 61842 0 98 LSC 0.000000 0 5 154 199 no 0.200000 2 0.500000 0.000000 1.000000 40.000000 rps3 gene rps3 rps3 61843 62502 -1 660 LSC 0.001212 2 0 252 15 no 0.200000 2 0.500000 0.001212 1.000000 30.800000 IGS_073 igs rps3|rpl22 rps3-rpl22 62503 62504 0 2 LSC 0.000000 0 0 79 13 no 0.000000 1 0.000000 NA 1.000000 19.700000 rpl22 gene rpl22 rpl22 62505 62903 -1 399 LSC 0.003509 3 0 81 300 no 0.400000 3 0.666667 0.003509 1.000000 36.900000 IGS_074 igs rpl22|rps19 rpl22-rps19 62904 62943 0 40 LSC 0.000000 0 0 134 300 no 0.000000 1 0.000000 0.000000 1.000000 28.800000 rps19 gene rps19 rps19 62944 63222 -1 279 LSC 0.000000 0 0 174 300 no 0.000000 1 0.000000 0.000000 1.000000 31.800000 IGS_075 igs rps19|rpl2 rps19-rpl2 63223 63272 0 50 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl2_part2 gene rpl2 rpl2 63273 63704 -1 432 LSC 0.000926 1 0 300 31 no 0.200000 2 0.500000 0.000926 1.000000 28.300000 IGS_076 igs rpl2|rpl2 rpl2-rpl2 63705 64367 0 663 LSC 0.000603 1 0 95 300 no 0.200000 2 0.500000 0.000603 1.000000 36.300000 rpl2_part1 gene rpl2 rpl2 64368 64763 -1 396 LSC 0.001010 1 0 300 191 no 0.200000 2 0.500000 0.001010 1.000000 39.600000 IGS_077 igs rpl2|rpl23 rpl2-rpl23 64764 64783 0 20 LSC 0.000000 0 0 8 171 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 rpl23 gene rpl23 rpl23 64784 65059 -1 276 LSC 0.001449 1 0 28 200 no 0.200000 2 0.500000 0.001449 1.000000 25.700000 IGS_078 igs rpl23|trnI-CAU rpl23-trnI-CAU 65060 65420 0 361 LSC 0.001108 1 3 104 93 no 0.600000 4 0.750000 0.001110 1.000000 40.100000 trnI-CAU tRNA trnI-CAU trnI-CAU 65421 65494 -1 74 LSC 0.000000 0 0 160 19 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_079 igs trnI-CAU|trnF-GAA trnI-CAU-trnF-GAA 65495 66287 0 793 LSC 0.004792 9 0 234 75 no 0.600000 4 0.750000 0.004792 1.000000 45.500000 trnF-GAA tRNA trnF-GAA trnF-GAA 66288 66360 -1 73 LSC 0.000000 0 0 4 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_080 igs trnF-GAA|trnL-UAA trnF-GAA-trnL-UAA 66361 66746 0 386 LSC 0.015168 13 103 77 127 yes 1.000000 5 1.000000 0.015029 0.950777 59.100000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 66747 66796 -1 50 LSC 0.000000 0 0 12 77 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_081 igs trnL-UAA|trnL-UAA trnL-UAA-trnL-UAA 66797 67279 0 483 LSC 0.007039 8 0 62 172 no 1.000000 5 1.000000 0.007039 1.000000 51.200000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 67280 67314 -1 35 LSC 0.000000 0 0 216 137 no 0.000000 1 0.000000 0.000000 1.000000 29.000000 IGS_082 igs trnL-UAA|trnT-UGU trnL-UAA-trnT-UGU 67315 67738 0 424 LSC 0.002830 3 74 251 240 yes 1.000000 5 1.000000 0.002986 1.000000 62.400000 trnT-UGU tRNA trnT-UGU trnT-UGU 67739 67811 1 73 LSC 0.000000 0 0 161 167 no 0.000000 1 0.000000 0.000000 1.000000 30.800000 IGS_083 igs trnT-UGU|rps4 trnT-UGU-rps4 67812 68035 0 224 LSC 0.001786 1 0 234 280 no 0.200000 2 0.500000 0.001786 1.000000 38.900000 rps4 gene rps4 rps4 68036 68632 1 597 LSC 0.003015 4 0 56 133 no 0.600000 4 0.750000 0.003015 1.000000 42.600000 IGS_084 igs rps4|trnS-GGA rps4-trnS-GGA 68633 68940 0 308 LSC 0.002597 2 0 126 96 no 0.400000 3 0.666667 0.002597 1.000000 35.600000 trnS-GGA tRNA trnS-GGA trnS-GGA 68941 69027 -1 87 LSC 0.000000 0 0 107 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_085 igs trnS-GGA|ycf3 trnS-GGA-ycf3 69028 69769 0 742 LSC 0.003388 5 24 194 179 yes 1.000000 5 1.000000 0.003434 0.994609 63.200000 ycf3_part1 gene ycf3 ycf3 69770 69895 1 126 LSC 0.000000 0 0 116 53 no 0.000000 1 0.000000 0.000000 1.000000 22.700000 IGS_086 igs ycf3|ycf3 ycf3-ycf3 69896 70613 0 718 LSC 0.003760 6 0 242 300 no 0.600000 4 0.750000 0.003760 1.000000 54.000000 ycf3_part2 gene ycf3 ycf3 70614 70841 1 228 LSC 0.000000 0 0 59 113 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 IGS_087 igs ycf3|ycf3 ycf3-ycf3 70842 71555 0 714 LSC 0.001120 2 0 287 156 no 0.400000 3 0.666667 0.001120 1.000000 45.100000 ycf3_part3 gene ycf3 ycf3 71556 71711 1 156 LSC 0.000000 0 0 300 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_088 igs ycf3|psaA ycf3-psaA 71712 72566 0 855 LSC 0.013253 23 75 300 300 yes 1.000000 5 1.000000 0.011533 0.938012 72.000000 psaA gene psaA psaA 72567 74831 1 2265 LSC 0.001943 10 0 272 300 no 1.000000 5 1.000000 0.001943 1.000000 58.600000 IGS_089 igs psaA|psaB psaA-psaB 74832 74856 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaB gene psaB psaB 74857 77061 1 2205 LSC 0.001361 7 0 300 300 no 0.600000 4 0.750000 0.001361 1.000000 50.800000 IGS_090 igs psaB|rps14 psaB-rps14 77062 77219 0 158 LSC 0.000000 0 4 246 300 no 0.000000 2 0.000000 0.000000 1.000000 36.600000 rps14 gene rps14 rps14 77220 77519 1 300 LSC 0.000000 0 0 300 108 no 0.000000 1 0.000000 0.000000 1.000000 26.900000 IGS_091 igs rps14|trnfM-CAU rps14-trnfM-CAU 77520 77645 0 126 LSC 0.007143 2 3 300 115 no 0.600000 4 0.750000 0.005575 1.000000 46.700000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 77646 77719 1 74 LSC 0.000000 0 0 10 41 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_092 igs trnfM-CAU|trnG-UCC trnfM-CAU-trnG-UCC 77720 77891 0 172 LSC 0.005128 2 16 84 182 no 0.400000 3 0.666667 0.005128 0.906977 39.100000 IGS_093 igs trnG-UCC|psbZ trnG-UCC-psbZ 77963 78224 0 262 LSC 0.005344 3 4 163 129 no 1.000000 5 1.000000 0.005392 0.996183 52.700000 psbZ gene psbZ psbZ 78225 78413 -1 189 LSC 0.004233 2 0 11 127 no 0.400000 3 0.666667 0.004233 1.000000 30.300000 IGS_094 igs psbZ|trnS-UGA psbZ-trnS-UGA 78414 78702 0 289 LSC 0.009689 7 0 19 102 no 0.600000 4 0.750000 0.009689 1.000000 38.800000 trnS-UGA tRNA trnS-UGA trnS-UGA 78703 78789 1 87 LSC 0.000000 0 0 12 15 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_095 igs trnS-UGA|psbC trnS-UGA-psbC 78790 78980 0 191 LSC 0.007330 3 0 99 78 no 0.600000 4 0.750000 0.007330 1.000000 41.100000 psbC gene psbC psbC 78981 80402 -1 1422 LSC 0.001828 5 0 5 288 no 0.600000 4 0.750000 0.001828 1.000000 37.900000 psbD gene psbD psbD 80350 81411 -1 1062 LSC 0.001318 3 0 75 10 no 0.400000 3 0.666667 0.001318 1.000000 34.200000 IGS_097 igs psbD|trnT-GGU psbD-trnT-GGU 81412 82722 0 1311 LSC 0.005267 16 101 258 42 no 1.000000 5 1.000000 0.005258 0.999237 56.500000 trnT-GGU tRNA trnT-GGU trnT-GGU 82723 82792 -1 70 LSC 0.005714 1 0 30 29 no 0.200000 2 0.500000 0.005714 1.000000 29.000000 IGS_098 igs trnT-GGU|BBW03_gr004 trnT-GGU-BBW03_gr004 82793 83178 0 386 LSC 0.002073 2 13 27 300 no 1.000000 5 1.000000 0.002115 1.000000 46.800000 BBW03_gr004 rRNA BBW03_gr004 BBW03_gr004 83179 84669 1 1491 LSC 0.000000 0 0 300 157 no 0.000000 1 0.000000 0.000000 1.000000 36.800000 IGS_099 igs BBW03_gr004|trnI-GAU BBW03_gr004-trnI-GAU 84670 84955 0 286 LSC 0.002797 2 0 300 192 no 0.400000 3 0.666667 0.002797 1.000000 42.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 84956 84997 1 42 LSC 0.000000 0 0 120 150 no 0.000000 1 0.000000 0.000000 1.000000 27.700000 IGS_100 igs trnI-GAU|ycf68 trnI-GAU-ycf68 84998 85096 0 99 LSC 0.000000 0 0 162 51 no 0.000000 1 0.000000 0.000000 1.000000 22.600000 ycf68 gene ycf68 ycf68 85097 85357 1 261 LSC 0.001538 1 1 261 272 no 0.400000 3 0.666667 0.001538 0.996169 42.800000 IGS_101 igs ycf68|trnI-GAU ycf68-trnI-GAU 85358 85971 0 614 LSC 0.001629 2 0 209 78 no 0.200000 3 0.333333 0.001629 1.000000 35.700000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 85972 86006 1 35 LSC 0.000000 0 0 206 43 no 0.000000 1 0.000000 0.000000 1.000000 22.000000 IGS_102 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 86007 86085 0 79 LSC 0.005063 1 0 241 300 no 0.200000 2 0.500000 0.005063 1.000000 41.400000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 86086 86123 1 38 LSC 0.000000 0 0 35 300 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_103 igs trnA-UGC|trnA-UGC trnA-UGC-trnA-UGC 86124 86894 0 771 LSC 0.001816 3 0 73 200 no 0.600000 4 0.750000 0.001816 1.000000 43.000000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 86895 86929 1 35 LSC 0.000000 0 0 229 165 no 0.000000 1 0.000000 0.000000 1.000000 31.100000 IGS_104 igs trnA-UGC|BBW03_gr003 trnA-UGC-BBW03_gr003 86930 87085 0 156 LSC 0.000000 0 0 264 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 BBW03_gr003 rRNA BBW03_gr003 BBW03_gr003 87086 89892 1 2807 LSC 0.000428 3 0 300 132 no 0.200000 2 0.500000 0.000428 1.000000 36.300000 IGS_105 igs BBW03_gr003|BBW03_gr002 BBW03_gr003-BBW03_gr002 89893 89996 0 104 LSC 0.000000 0 0 300 28 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 BBW03_gr002 rRNA BBW03_gr002 BBW03_gr002 89997 90099 1 103 LSC 0.003883 1 0 300 162 no 0.200000 2 0.500000 0.003883 1.000000 37.600000 IGS_106 igs BBW03_gr002|BBW03_gr001 BBW03_gr002-BBW03_gr001 90100 90334 0 235 LSC 0.014468 6 0 74 146 no 0.400000 3 0.666667 0.014468 1.000000 41.500000 BBW03_gr001 rRNA BBW03_gr001 BBW03_gr001 90335 90454 1 120 LSC 0.000000 0 0 12 26 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_107 igs BBW03_gr001|trnR-ACG BBW03_gr001-trnR-ACG 90455 90662 0 208 LSC 0.003846 2 6 132 50 no 0.400000 3 0.666667 0.003918 1.000000 36.400000 trnR-ACG tRNA trnR-ACG trnR-ACG 90663 90736 1 74 LSC 0.005405 1 0 145 94 no 0.200000 2 0.500000 0.005405 1.000000 33.700000 IGS_108 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 90737 91313 0 577 LSC 0.005546 8 0 23 58 no 0.600000 4 0.750000 0.005546 1.000000 41.700000 trnN-GUU tRNA trnN-GUU trnN-GUU 91314 91386 -1 73 LSC 0.005479 1 0 83 125 no 0.200000 2 0.500000 0.005479 1.000000 32.900000 IGS_109 igs trnN-GUU|chlL trnN-GUU-chlL 91387 91683 0 297 LSC 0.002694 2 4 14 74 no 0.400000 3 0.666667 0.002717 1.000000 31.000000 chlL gene chlL chlL 91684 92559 1 876 LSC 0.001826 4 0 84 51 no 0.600000 4 0.750000 0.001826 1.000000 41.500000 IGS_110 igs chlL|chlN chlL-chlN 92560 92672 0 113 LSC 0.003540 1 0 202 300 no 0.200000 2 0.500000 0.003540 1.000000 40.200000 chlN gene chlN chlN 92673 94079 1 1407 LSC 0.001137 4 0 61 5 no 0.600000 4 0.750000 0.001137 1.000000 37.500000 IGS_111 igs chlN|ycf1 chlN-ycf1 94080 94338 0 259 LSC 0.006950 4 26 300 35 no 0.600000 4 0.750000 0.007467 1.000000 43.300000 ycf1 gene ycf1 ycf1 94339 100542 1 6204 LSC 0.007238 100 236 193 36 yes 1.000000 5 1.000000 0.006964 0.980658 49.300000 IGS_112 igs ycf1|rps15 ycf1-rps15 100543 100867 0 325 LSC 0.002500 2 6 96 111 no 0.600000 4 0.750000 0.002505 0.984615 41.300000 rps15 gene rps15 rps15 100868 101134 1 267 LSC 0.001498 1 0 76 35 no 0.200000 2 0.500000 0.001498 1.000000 26.300000 IGS_113 igs rps15|psaC rps15-psaC 101135 102872 0 1738 LSC 0.006214 25 108 155 101 no 1.000000 5 1.000000 0.006098 1.000000 61.300000 psaC gene psaC psaC 102873 103118 1 246 LSC 0.001626 1 0 85 30 no 0.200000 2 0.500000 0.001626 1.000000 26.000000 IGS_114 igs psaC|ccsA psaC-ccsA 103119 104553 0 1435 LSC 0.007221 22 303 144 39 no 1.000000 5 1.000000 0.007438 0.996516 56.600000 ccsA gene ccsA ccsA 104554 105513 -1 960 LSC 0.003750 8 0 175 22 no 0.600000 4 0.750000 0.003750 1.000000 40.600000 IGS_115 igs ccsA|trnL-UAG ccsA-trnL-UAG 105514 105650 0 137 LSC 0.008759 3 0 8 206 no 0.600000 4 0.750000 0.008759 1.000000 37.300000 trnL-UAG tRNA trnL-UAG trnL-UAG 105651 105728 -1 78 LSC 0.000000 0 0 65 128 no 0.000000 1 0.000000 0.000000 1.000000 23.600000 IGS_116 igs trnL-UAG|trnP-GGG trnL-UAG-trnP-GGG 105729 105888 0 160 LSC 0.007500 3 0 143 126 no 0.400000 3 0.666667 0.007500 1.000000 41.400000 trnP-GGG tRNA trnP-GGG trnP-GGG 105889 105962 1 74 LSC 0.000000 0 0 23 52 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 IGS_117 igs trnP-GGG|rpl32 trnP-GGG-rpl32 105963 107070 0 1108 LSC 0.003610 10 12 97 56 no 1.000000 5 1.000000 0.003636 1.000000 51.900000 rpl32 gene rpl32 rpl32 107071 107250 -1 180 LSC 0.002222 1 0 144 28 no 0.200000 2 0.500000 0.002222 1.000000 26.300000 IGS_118 igs rpl32|trnV-GAC rpl32-trnV-GAC 107251 108301 0 1051 LSC 0.006814 16 106 123 99 yes 1.000000 5 1.000000 0.006855 0.991437 61.500000 trnV-GAC tRNA trnV-GAC trnV-GAC 108302 108373 -1 72 LSC 0.000000 0 0 15 27 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_119 igs trnV-GAC|rps12 trnV-GAC-rps12 108374 109641 0 1268 LSC 0.007729 24 39 87 300 no 1.000000 5 1.000000 0.007872 1.000000 59.600000 rps12_part2 gene rps12 rps12 109642 110438 1 797 LSC 0.001004 2 3 21 7 no 0.600000 4 0.750000 0.001006 1.000000 38.000000 IGS_120 igs rps12|rps7 rps12-rps7 110439 110490 0 52 LSC 0.019231 2 0 123 202 no 0.200000 3 0.333333 0.019231 1.000000 45.200000 rps7 gene rps7 rps7 110491 110958 1 468 LSC 0.001709 2 0 43 134 no 0.400000 3 0.666667 0.001709 1.000000 34.300000 IGS_121 igs rps7|trnL-CAA rps7-trnL-CAA 110959 112725 0 1767 LSC 0.009055 36 92 203 89 yes 1.000000 5 1.000000 0.009356 0.999434 62.200000 trnL-CAA tRNA trnL-CAA trnL-CAA 112726 112806 1 81 LSC 0.000000 0 0 2 8 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_122 igs trnL-CAA|ycf2 trnL-CAA-ycf2 112807 113509 0 703 LSC 0.007174 12 25 83 76 no 1.000000 5 1.000000 0.007304 0.991465 58.800000 ycf2 gene ycf2 ycf2 113510 119845 -1 6336 LSC 0.003977 56 0 29 113 no 1.000000 5 1.000000 0.003977 1.000000 42.600000 IGS_123 igs ycf2|trnH-GUG ycf2-trnH-GUG 119846 120281 0 436 LSC 0.021598 14 187 25 201 yes 1.000000 5 1.000000 0.017810 0.727064 52.500000 trnH-GUG tRNA trnH-GUG trnH-GUG 120282 120356 -1 75 LSC 0.000000 0 0 9 126 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_124 igs trnH-GUG|trnI-CAU trnH-GUG-trnI-CAU 120357 120633 0 277 LSC 0.008664 5 0 84 292 no 1.000000 5 1.000000 0.008664 1.000000 50.000000 trnI-CAU tRNA trnI-CAU trnI-CAU 120634 120707 1 74 LSC 0.000000 0 0 19 218 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_125 igs trnI-CAU|psbA trnI-CAU-psbA 120708 120859 0 152 LSC 0.000000 1059 2887 93 66 no 1.000000 5 1.000000 0.003753 0.995447 60.900000