primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score trnK-UUU-rps16_p1 trnK-UUU-rps16 1 AGTCGCACTTAAAAGCCGAG GCTCAACCTACGGAAACTGT 20 20 50.0 50.0 58.6 57.8 6.4 0.0 0.735856 3935 4708 897-910 1.000000 76.5 trnK-UUU-rps16_p2 trnK-UUU-rps16 2 AGTCGCACTTAAAAGCCGAG GGAGCTCAACCTACGGAAAC 20 20 50.0 55.0 58.6 58.3 6.4 17.2 0.847318 3935 4708 900-913 1.000000 75.6 trnK-UUU-rps16_p3 trnK-UUU-rps16 3 TAGTCGCACTTAAAAGCCGA GCTCAACCTACGGAAACTGT 20 20 45.0 50.0 57.3 57.8 3.0 0.0 0.894008 3935 4708 898-911 1.000000 75.2 trnK-UUU-rps16_p4 trnK-UUU-rps16 4 TCGCACTTAAAAGCCGAGTA GCTCAACCTACGGAAACTGT 20 20 45.0 50.0 57.3 57.8 3.0 0.0 0.894008 3935 4708 895-908 1.000000 75.2 trnK-UUU-rps16_p5 trnK-UUU-rps16 5 AGTCGCACTTAAAAGCCGAG AGGAGCTCAACCTACGGAAA 20 20 50.0 50.0 58.6 58.4 6.4 17.2 0.929621 3935 4708 901-914 1.000000 74.9 trnD-GUC-psbM_p1 trnD-GUC-psbM 1 TTAGAGTACCGCCCTGTCAA CAATTGCTTTGACTCACCGT 20 20 50.0 45.0 58.1 56.9 0.0 0.0 1.137837 24027 25314 1427-1455 1.000000 72.9 trnD-GUC-psbM_p2 trnD-GUC-psbM 2 ATTGGTTAGAGTACCGCCCT CAATTGCTTTGACTCACCGT 20 20 50.0 45.0 58.1 56.9 0.0 0.0 1.189836 24027 25314 1432-1460 1.000000 72.5 trnD-GUC-psbM_p3 trnD-GUC-psbM 3 TTAGAGTACCGCCCTGTCAA TCAATTGCTTTGACTCACCG 20 20 50.0 45.0 58.1 56.7 0.0 0.0 1.421455 24027 25314 1428-1456 1.000000 70.6 trnD-GUC-psbM_p4 trnD-GUC-psbM 4 TTAGAGTACCGCCCTGTCAA CAATTGCTTTGACTCACCGTT 20 21 50.0 42.9 58.1 57.6 0.0 0.0 1.426602 24027 25314 1427-1455 1.000000 70.6 trnD-GUC-psbM_p5 trnD-GUC-psbM 5 ATTGGTTAGAGTACCGCCCT TCAATTGCTTTGACTCACCG 20 20 50.0 45.0 58.1 56.7 0.0 0.0 1.473454 24027 25314 1433-1461 1.000000 70.2 atpI-atpH_p1 atpI-atpH 1 TAGGTGAATCCATGGAGGGT TCCAATAGAAGCGAGGCCTA 20 20 50.0 50.0 57.4 57.9 21.3 4.4 0.669200 39066 39737 766-771 1.000000 76.2 atpI-atpH_p2 atpI-atpH 2 TAGGTGAATCCATGGAGGGT CCTACGGATAATCCAGCAGC 20 20 50.0 55.0 57.4 57.9 21.3 0.0 0.673114 39066 39737 750-755 1.000000 76.2 atpI-atpH_p3 atpI-atpH 3 TAGGTGAATCCATGGAGGGT GCCTACGGATAATCCAGCAG 20 20 50.0 55.0 57.4 57.9 21.3 0.0 0.673114 39066 39737 751-756 1.000000 76.2 atpI-atpH_p4 atpI-atpH 4 TAGGTGAATCCATGGAGGGT AACGGAAGCAGCAGAAATCA 20 20 50.0 45.0 57.4 58.1 21.3 0.0 0.690840 39066 39737 727-732 1.000000 76.1 atpI-atpH_p5 atpI-atpH 5 TAGGTGAATCCATGGAGGGT ACGGAAGCAGCAGAAATCAA 20 20 50.0 45.0 57.4 58.1 21.3 0.0 0.690840 39066 39737 726-731 1.000000 76.1 trnF-GAA-ndhJ_p1 trnF-GAA-ndhJ 1 AGGACTGAAAATCCTCGTGC AAAGTTGGATTGGTTGGCCT 20 20 50.0 45.0 57.9 57.9 0.0 3.3 0.202244 48079 48497 538-540 1.000000 80.3 trnF-GAA-ndhJ_p2 trnF-GAA-ndhJ 2 AGGACTGAAAATCCTCGTGC AAGTTGGATTGGTTGGCCTT 20 20 50.0 45.0 57.9 57.9 0.0 3.3 0.202244 48079 48497 537-539 1.000000 80.3 trnF-GAA-ndhJ_p3 trnF-GAA-ndhJ 3 AGGACTGAAAATCCTCGTGC AGTTGGATTGGTTGGCCTTT 20 20 50.0 45.0 57.9 57.9 0.0 3.3 0.202244 48079 48497 536-538 1.000000 80.3 trnF-GAA-ndhJ_p4 trnF-GAA-ndhJ 4 GACTGAAAATCCTCGTGCCA AAGTTGGATTGGTTGGCCTT 20 20 50.0 45.0 58.2 57.9 0.0 3.3 0.293229 48079 48497 535-537 1.000000 79.6 trnF-GAA-ndhJ_p5 trnF-GAA-ndhJ 5 GACTGAAAATCCTCGTGCCA AGTTGGATTGGTTGGCCTTT 20 20 50.0 45.0 58.2 57.9 0.0 3.3 0.293229 48079 48497 534-536 1.000000 79.6 ndhC-trnV-UAC_p1 ndhC-trnV-UAC 1 GGGGCCAAAGCTATGGAAAT TGGGTTCTTGGAACAGTTCG 20 20 50.0 50.0 58.2 58.0 4.4 7.2 0.244793 50208 51551 1527-1535 1.000000 79.5 ndhC-trnV-UAC_p2 ndhC-trnV-UAC 2 GGGGCCAAAGCTATGGAAAT TGCATGTTGGGTTCTTGGAA 20 20 50.0 45.0 58.2 57.9 4.4 0.0 0.285756 50208 51551 1534-1542 1.000000 79.2 ndhC-trnV-UAC_p3 ndhC-trnV-UAC 3 TTATCGGGGCCAAAGCTATG TGGGTTCTTGGAACAGTTCG 20 20 50.0 50.0 57.7 58.0 4.4 7.2 0.308559 50208 51551 1532-1540 1.000000 79.0 ndhC-trnV-UAC_p4 ndhC-trnV-UAC 4 TTATCGGGGCCAAAGCTATG TGCATGTTGGGTTCTTGGAA 20 20 50.0 45.0 57.7 57.9 4.4 0.0 0.349522 50208 51551 1539-1547 1.000000 78.7 ndhC-trnV-UAC_p5 ndhC-trnV-UAC 5 GGGGCCAAAGCTATGGAAAT GGGTTCTTGGAACAGTTCGA 20 20 50.0 50.0 58.2 57.8 4.4 7.2 0.456430 50208 51551 1526-1534 1.000000 77.8 accD-rps12_p1 accD-rps12 1 TATCGTATGTGCTTCTGGCG CCGTTTCAGCTTACGATCCA 20 20 50.0 50.0 57.9 58.0 0.0 12.8 0.138784 59900 61783 2370-2597 1.000000 81.6 accD-rps12_p2 accD-rps12 2 TTGGCTAACGTCACGATTGT CCGTTTCAGCTTACGATCCA 20 20 45.0 50.0 57.8 58.0 2.9 12.8 0.162417 59900 61783 2201-2428 1.000000 81.6 accD-rps12_p3 accD-rps12 3 TGTTGGCTAACGTCACGATT CCAATGGCTTTTGCTACTGC 20 20 45.0 50.0 57.8 58.0 2.9 0.0 0.158263 59900 61783 2789-2958 0.800000 72.9 accD-rps12_p4 accD-rps12 4 TTGGCTAACGTCACGATTGT CCAATGGCTTTTGCTACTGC 20 20 45.0 50.0 57.8 58.0 2.9 0.0 0.158263 59900 61783 2787-2956 0.800000 72.9 accD-rps12_p5 accD-rps12 5 TATCGTATGTGCTTCTGGCG CCAATGGCTTTTGCTACTGC 20 20 50.0 50.0 57.9 58.0 0.0 0.0 0.134631 59900 61783 2956-2988 0.600000 64.5 rps18_p1 rps18 1 ATCCGATTCGATCCAGGAGT AACAAAATCTGTCACTGTCA 20 20 50.0 35.0 58.0 53.0 7.8 0.0 5.046239 63138 63629 559-589 1.000000 44.7 rps18_p2 rps18 2 ATCCGATTCGATCCAGGAGT ACAAAATCTGTCACTGTCAA 20 20 50.0 35.0 58.0 53.0 7.8 0.0 5.046239 63138 63629 558-588 1.000000 44.7 rps18_p3 rps18 3 ATCCGATTCGATCCAGGAGT AACAAAATCTGTCACTGTCAA 20 21 50.0 33.3 58.0 53.9 7.8 0.0 5.130897 63138 63629 559-589 1.000000 44.7 rps18_p4 rps18 4 AGATCCGATTCGATCCAGGA AACAAAATCTGTCACTGTCA 20 20 50.0 35.0 57.7 53.0 7.8 0.0 5.338183 63138 63629 561-591 1.000000 44.7 rps18_p5 rps18 5 AGATCCGATTCGATCCAGGA ACAAAATCTGTCACTGTCAA 20 20 50.0 35.0 57.7 53.0 7.8 0.0 5.338183 63138 63629 560-590 1.000000 44.7 psbJ-petA_p1 psbJ-petA 1 TCCGGATTAGGATCATCCCT TAGCATCTGTCGTTTTGGCA 20 20 50.0 45.0 57.0 57.8 0.0 0.0 1.200037 67446 68426 1078-1111 1.000000 73.4 psbJ-petA_p2 psbJ-petA 2 TCCGGATTAGGATCATCCCT TCTGTCGTTTTGGCACAGAT 20 20 50.0 45.0 57.0 57.7 0.0 0.0 1.277189 67446 68426 1073-1106 1.000000 72.8 psbJ-petA_p3 psbJ-petA 3 CGGAAGGATCCCTCTTTGGT TAGCATCTGTCGTTTTGGCA 20 20 55.0 45.0 59.1 57.8 8.6 0.0 1.264907 67446 68426 1163-1196 1.000000 72.7 psbJ-petA_p4 psbJ-petA 4 TCCGGATTAGGATCATCCCT CATCTGTCGTTTTGGCACAG 20 20 50.0 50.0 57.0 57.7 0.0 0.0 1.343449 67446 68426 1075-1108 1.000000 72.3 psbJ-petA_p5 psbJ-petA 5 CGGAAGGATCCCTCTTTGGT TCTGTCGTTTTGGCACAGAT 20 20 55.0 45.0 59.1 57.7 8.6 0.0 1.342059 67446 68426 1158-1191 1.000000 72.1 rpl36-infA_p1 rpl36-infA 1 ACGAACAGAAGCACGGATTT ATGATGATGATGCTGATGTT 20 20 45.0 35.0 58.1 52.7 0.0 0.0 5.444903 79880 80471 640-645 1.000000 43.7 rpl36-infA_p2 rpl36-infA 2 ACGAACAGAAGCACGGATTT TGATGATGATGCTGATGTTATCT 20 23 45.0 34.8 58.1 55.6 0.0 0.0 5.518861 79880 80471 639-644 1.000000 43.7 rpl36-infA_p3 rpl36-infA 3 ACGAACAGAAGCACGGATTT TGATGATGATGCTGATGTTATCTT 20 24 45.0 33.3 58.1 56.3 0.0 0.0 5.818884 79880 80471 639-644 1.000000 43.7 rpl36-infA_p4 rpl36-infA 4 TTTACGAACAGAAGCACGGA ATGATGATGATGCTGATGTT 20 20 45.0 35.0 57.5 52.7 0.0 0.0 5.836341 79880 80471 643-648 1.000000 43.7 rpl36-infA_p5 rpl36-infA 5 TTTACGAACAGAAGCACGGA TGATGATGATGCTGATGTTATCT 20 23 45.0 34.8 57.5 55.6 0.0 0.0 5.910299 79880 80471 642-647 1.000000 43.7 trnI-CAU-ycf2_p1 trnI-CAU-ycf2 1 TACCATTCAGCCATGGATGC ACCAAAATGTTTTTCGGTGT 20 20 50.0 35.0 58.0 54.5 25.4 0.9 3.519302 86963 87705 788-796 1.000000 55.1 trnI-CAU-ycf2_p2 trnI-CAU-ycf2 2 AGGAATTGAACCCGCAACTT ACCAAAATGTTTTTCGGTGT 20 20 45.0 35.0 58.0 54.5 0.0 0.9 3.509399 86963 87705 831-839 1.000000 55.0 trnI-CAU-ycf2_p3 trnI-CAU-ycf2 3 TACCATTCAGCCATGGATGC ACCAAAATGTTTTTCGGTGTT 20 21 50.0 33.3 58.0 55.3 25.4 0.9 3.679730 86963 87705 788-796 1.000000 53.8 trnI-CAU-ycf2_p4 trnI-CAU-ycf2 4 AGGAATTGAACCCGCAACTT AACCAAAATGTTTTTCGGTGT 20 21 45.0 33.3 58.0 55.3 0.0 2.2 3.669827 86963 87705 832-840 1.000000 53.7 trnI-CAU-ycf2_p5 trnI-CAU-ycf2 5 AGGAATTGAACCCGCAACTT ACCAAAATGTTTTTCGGTGTT 20 21 45.0 33.3 58.0 55.3 0.0 0.9 3.669827 86963 87705 831-839 1.000000 53.7 ycf2_p1 ycf2 1 TCAGAGAACCCAGGACCAAT AGCATCTTGTCGCCTTTTCA 20 20 50.0 45.0 58.0 58.1 0.0 0.0 0.148573 88478 88597 804-939 1.000000 84.2 ycf2_p2 ycf2 2 TCAGAGAACCCAGGACCAAT TGAAAAGCATCTTGTCGCCT 20 20 50.0 45.0 58.0 58.1 0.0 0.0 0.148573 88478 88597 809-944 1.000000 84.1 ycf2_p3 ycf2 3 TCAGAGAACCCAGGACCAAT TCCATCCGGGATCTGATGAA 20 20 50.0 50.0 58.0 57.9 0.0 6.5 0.146432 88478 88597 916-1051 1.000000 83.6 ycf2_p4 ycf2 4 ATCTCAGAGAACCCAGGACC AGCATCTTGTCGCCTTTTCA 20 20 55.0 45.0 58.1 58.1 3.6 0.0 0.231008 88478 88597 807-942 1.000000 83.5 ycf2_p5 ycf2 5 ATCTCAGAGAACCCAGGACC TCCATCCGGGATCTGATGAA 20 20 55.0 50.0 58.1 57.9 3.6 6.5 0.228867 88478 88597 919-1054 1.000000 82.9 ycf2-trnL-CAA_p1 ycf2-trnL-CAA 1 CGGAAGGATTGAATAAGAATAACA AAATGGTAGACACGCGAGAC 24 20 33.3 50.0 55.0 58.0 0.0 15.9 6.991599 94495 95164 769-779 1.000000 42.0 ycf2-trnL-CAA_p2 ycf2-trnL-CAA 2 CGGAAGGATTGAATAAGAATAACA TGAAATGGTAGACACGCGAG 24 20 33.3 50.0 55.0 58.0 0.0 15.9 6.992970 94495 95164 771-781 1.000000 42.0 ycf2-trnL-CAA_p3 ycf2-trnL-CAA 3 CGGAAGGATTGAATAAGAATAACA AATCTCGTGCTAAACAGCGT 24 20 33.3 45.0 55.0 57.9 0.0 0.0 7.064055 94495 95164 745-755 1.000000 42.0 ycf2-trnL-CAA_p4 ycf2-trnL-CAA 4 CGGAAGGATTGAATAAGAATAACA TGGTGAAATGGTAGACACGC 24 20 33.3 50.0 55.0 58.2 0.0 0.0 7.180435 94495 95164 774-784 1.000000 42.0 ycf2-trnL-CAA_p5 ycf2-trnL-CAA 5 CGGAAGGATTGAATAAGAATAACA GGGATGCCTTGATGGTGAAA 24 20 33.3 50.0 55.0 58.1 0.0 0.0 7.132465 94495 95164 786-796 1.000000 41.9 trnV-GAC-rrn16_p1 trnV-GAC-rrn16 1 TCGGTTCAAATCTGATTATCCCT CGACTTGCATGTGTTAAGCA 23 20 39.1 45.0 57.4 57.0 2.8 10.4 4.597874 100776 101613 545-926 1.000000 55.2 trnV-GAC-rrn16_p2 trnV-GAC-rrn16 2 TCGGTTCAAATCTGATTATCCCT CATGTGTTAAGCATGCCGC 23 19 39.1 52.6 57.4 58.1 2.8 15.7 4.682322 100776 101613 538-919 1.000000 54.5 trnV-GAC-rrn16_p3 trnV-GAC-rrn16 3 TCGGTTCAAATCTGATTATCCCT GAGCCAGGATCAAACTCTCA 23 20 39.1 50.0 57.4 56.9 2.8 0.0 4.698125 100776 101613 506-887 1.000000 54.4 trnV-GAC-rrn16_p4 trnV-GAC-rrn16 4 TCGGTTCAAATCTGATTATCCCT TGAGCCAGGATCAAACTCTC 23 20 39.1 50.0 57.4 56.9 2.8 4.4 4.698125 100776 101613 507-888 1.000000 54.4 trnV-GAC-rrn16_p5 trnV-GAC-rrn16 5 TCGGTTCAAATCTGATTATCCCT CTGAGCCAGGATCAAACTCT 23 20 39.1 50.0 57.4 56.9 2.8 9.2 4.706591 100776 101613 508-889 1.000000 54.3 rrn16-trnI-GAU_p1 rrn16-trnI-GAU 1 CAAGGTAGCCGTACTGGAAG GGCACAACGACGCAATTATC 20 20 55.0 50.0 57.7 58.2 7.8 0.0 0.485056 103125 104216 1164-1192 1.000000 81.8 rrn16-trnI-GAU_p2 rrn16-trnI-GAU 2 AGTGACTGGAGTGAAGTCGT GGCACAACGACGCAATTATC 20 20 50.0 50.0 58.3 58.2 0.0 0.0 0.496177 103125 104216 1186-1214 1.000000 81.6 rrn16-trnI-GAU_p3 rrn16-trnI-GAU 3 AAGTCGTAACAAGGTAGCCG GGCACAACGACGCAATTATC 20 20 50.0 50.0 57.6 58.2 0.0 0.0 0.548742 103125 104216 1173-1201 1.000000 81.3 rrn16-trnI-GAU_p4 rrn16-trnI-GAU 4 AACAAGGTAGCCGTACTGGA GGCACAACGACGCAATTATC 20 20 50.0 50.0 58.4 58.2 7.8 0.0 0.553655 103125 104216 1166-1194 1.000000 81.3 rrn16-trnI-GAU_p5 rrn16-trnI-GAU 5 ACAAGGTAGCCGTACTGGAA GGCACAACGACGCAATTATC 20 20 50.0 50.0 58.4 58.2 7.8 0.0 0.553655 103125 104216 1165-1193 1.000000 81.3 trnR-ACG-trnN-GUU_p1 trnR-ACG-trnN-GUU 1 CAGAGGATTAGAGCACGTGG GTCGTAGGTTCAAATCCTATTTGA 20 24 55.0 37.5 57.8 56.8 18.9 10.3 5.437352 109973 110513 631-688 1.000000 42.1 trnR-ACG-trnN-GUU_p2 trnR-ACG-trnN-GUU 2 CAGAGGATTAGAGCACGTGG GTCGTAGGTTCAAATCCTATTTGAG 20 25 55.0 40.0 57.8 57.8 18.9 13.2 5.451337 109973 110513 631-688 1.000000 42.1 trnR-ACG-trnN-GUU_p3 trnR-ACG-trnN-GUU 3 GAACAGAACAGATCCCGTGG GTCGTAGGTTCAAATCCTATTTGA 20 24 55.0 37.5 58.3 56.8 0.0 10.3 5.494592 109973 110513 668-725 1.000000 42.0 trnR-ACG-trnN-GUU_p4 trnR-ACG-trnN-GUU 4 GGAACAGAACAGATCCCGTG GTCGTAGGTTCAAATCCTATTTGA 20 24 55.0 37.5 58.3 56.8 0.0 10.3 5.494592 109973 110513 669-726 1.000000 42.0 trnR-ACG-trnN-GUU_p5 trnR-ACG-trnN-GUU 5 GAACAGAACAGATCCCGTGG GTCGTAGGTTCAAATCCTATTTGAG 20 25 55.0 40.0 58.3 57.8 0.0 13.2 5.508577 109973 110513 668-725 1.000000 42.0 ycf1-trnN-GUU_p1 ycf1-trnN-GUU 1 CATCCGGCGACAGTACTTAG GAAGACTTGGATCGGACCAC 20 20 55.0 55.0 57.9 58.0 9.3 0.0 0.132656 132434 133356 1822-1961 1.000000 87.2 ycf1-trnN-GUU_p2 ycf1-trnN-GUU 2 CATCCGGCGACAGTACTTAG AATTGGTTACCCGACCCCTA 20 20 55.0 50.0 57.9 58.0 9.3 0.0 0.151404 132434 133356 1860-1999 1.000000 87.0 ycf1-trnN-GUU_p3 ycf1-trnN-GUU 3 CATCCGGCGACAGTACTTAG ACTTGGATCGGACCACCTTA 20 20 55.0 50.0 57.9 58.1 9.3 1.3 0.174132 132434 133356 1818-1957 1.000000 86.9 ycf1-trnN-GUU_p4 ycf1-trnN-GUU 4 CATCCGGCGACAGTACTTAG TTGGATCGGACCACCTTAGT 20 20 55.0 50.0 57.9 58.1 9.3 1.3 0.174132 132434 133356 1816-1955 1.000000 86.9 ycf1-trnN-GUU_p5 ycf1-trnN-GUU 5 GGGGTTCTGCCATAACACAT GAAGACTTGGATCGGACCAC 20 20 50.0 55.0 57.9 58.0 0.0 0.0 0.155416 132434 133356 1984-2123 1.000000 86.8 chlL-trnH-GUG_p1 chlL-trnH-GUG 1 ACCAATTCCGCCTTTTCCAT GACGTAGCCAAGTGGTTCAA 20 20 45.0 50.0 58.1 58.1 0.0 0.0 0.189111 136053 136479 535-548 1.000000 80.4 chlL-trnH-GUG_p2 chlL-trnH-GUG 2 GTCTGGCTAGGGCAATTGAA GACGTAGCCAAGTGGTTCAA 20 20 50.0 50.0 57.9 58.1 10.3 0.0 0.255073 136053 136479 578-591 1.000000 79.8 chlL-trnH-GUG_p3 chlL-trnH-GUG 3 TTTTCACCACGTCTGGCTAG GACGTAGCCAAGTGGTTCAA 20 20 50.0 50.0 57.8 58.1 0.0 0.0 0.290120 136053 136479 588-601 1.000000 79.4 chlL-trnH-GUG_p4 chlL-trnH-GUG 4 ACCAATTCCGCCTTTTCCAT ATTATTTGGGGCGGACGTAG 20 20 45.0 50.0 58.1 57.8 0.0 0.0 0.312652 136053 136479 548-561 1.000000 79.4 chlL-trnH-GUG_p5 chlL-trnH-GUG 5 ACCAATTCCGCCTTTTCCAT CTATTATTTGGGGCGGACGT 20 20 45.0 50.0 58.1 57.8 0.0 0.0 0.312652 136053 136479 550-563 1.000000 79.4