feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH-GUG tRNA trnH-GUG trnH-GUG 17 91 -1 75 LSC 0.006667 1 0 60 4 no 0.250000 2 0.500000 0.006667 1.000000 28.400000 IGS_001 igs trnH-GUG|psbA trnH-GUG-psbA 92 549 0 458 LSC 0.093797 76 35 74 15 yes 1.000000 4 1.000000 0.095046 0.951965 81.400000 psbA gene psbA psbA 550 1611 -1 1062 LSC 0.011613 24 0 9 12 no 1.000000 4 1.000000 0.011613 1.000000 52.500000 IGS_002 igs psbA|trnK-UUU psbA-trnK-UUU 1612 1867 0 256 LSC 0.034505 17 8 56 63 no 1.000000 4 1.000000 0.032583 0.996094 69.100000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 1868 1902 -1 35 LSC 0.000000 0 0 17 28 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 matK gene matK matK 2231 3760 -1 1530 LSC 0.026797 80 0 28 11 no 1.000000 4 1.000000 0.026797 1.000000 63.100000 IGS_005 igs matK|trnK-UUU matK-trnK-UUU 3761 4482 0 722 LSC 0.033520 47 6 5 69 no 1.000000 4 1.000000 0.033520 0.991690 68.100000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 4483 4519 -1 37 LSC 0.000000 0 0 9 32 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_006 igs trnK-UUU|rps16 trnK-UUU-rps16 4520 4886 0 367 LSC 0.035714 26 17 46 16 no 1.000000 4 1.000000 0.036825 0.972752 69.800000 rps16 gene rps16 rps16 4887 5947 -1 1061 LSC 0.028329 59 14 13 21 no 1.000000 4 1.000000 0.028577 0.996230 65.900000 IGS_007 igs rps16|trnQ-UUG rps16-trnQ-UUG 5948 7080 0 1133 LSC 0.055655 115 256 63 29 yes 1.000000 4 1.000000 0.062311 0.977935 84.900000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 7081 7152 -1 72 LSC 0.027778 4 0 2 4 no 0.250000 2 0.500000 0.027778 1.000000 43.000000 IGS_008 igs trnQ-UUG|psbK trnQ-UUG-psbK 7153 7511 0 359 LSC 0.025070 18 9 25 10 no 1.000000 4 1.000000 0.025595 1.000000 60.000000 psbK gene psbK psbK 7512 7691 1 180 LSC 0.024074 8 0 19 30 no 1.000000 4 1.000000 0.024074 1.000000 55.300000 IGS_009 igs psbK|psbI psbK-psbI 7692 8132 0 441 LSC 0.049251 40 32 39 11 yes 1.000000 4 1.000000 0.050614 0.959184 79.300000 psbI gene psbI psbI 8133 8243 1 111 LSC 0.022523 5 0 62 12 no 0.500000 3 0.666667 0.022523 1.000000 44.800000 IGS_010 igs psbI|trnS-GCU psbI-trnS-GCU 8244 8271 0 28 LSC 0.017857 1 1 6 95 no 0.250000 2 0.500000 0.018519 1.000000 40.600000 trnS-GCU tRNA trnS-GCU trnS-GCU 8272 8361 -1 90 LSC 0.000000 0 0 15 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_011 igs trnS-GCU|trnG-UCC trnS-GCU-trnG-UCC 8362 8713 0 352 LSC 0.063755 41 30 105 41 yes 1.000000 4 1.000000 0.064508 0.943182 80.600000 trnG-UCC_part1 tRNA trnG-UCC trnG-UCC 8714 8736 1 23 LSC 0.000000 0 0 7 18 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 trnG-UCC_part2 tRNA trnG-UCC trnG-UCC 9416 9463 1 48 LSC 0.000000 0 0 12 6 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_014 igs trnG-UCC|trnR-UCU trnG-UCC-trnR-UCU 9464 9782 0 319 LSC 0.095611 50 35 60 38 yes 1.000000 4 1.000000 0.073545 0.968652 80.500000 trnR-UCU tRNA trnR-UCU trnR-UCU 9783 9854 1 72 LSC 0.020833 3 0 8 9 no 0.500000 3 0.666667 0.020833 1.000000 43.300000 IGS_015 igs trnR-UCU|atpA trnR-UCU-atpA 9855 10053 0 199 LSC 0.051089 18 11 4 2 yes 1.000000 4 1.000000 0.052593 0.984925 77.000000 atpA gene atpA atpA 10054 11580 -1 1527 LSC 0.016699 48 0 12 30 no 1.000000 4 1.000000 0.016699 1.000000 56.000000 IGS_016 igs atpA|atpF atpA-atpF 11581 11647 0 67 LSC 0.027778 3 1 110 31 no 1.000000 4 1.000000 0.027778 0.985075 59.300000 atpF gene atpF atpF 11648 12957 -1 1310 LSC 0.019805 49 16 0 1 no 1.000000 4 1.000000 0.019565 0.989313 58.500000 IGS_017 igs atpF|atpH atpF-atpH 12958 13373 0 416 LSC 0.033654 28 0 16 111 no 1.000000 4 1.000000 0.033654 1.000000 64.700000 atpH gene atpH atpH 13374 13619 -1 246 LSC 0.004065 2 0 5 44 no 0.500000 3 0.666667 0.004065 1.000000 31.300000 IGS_018 igs atpH|atpI atpH-atpI 13620 14417 0 798 LSC 0.036734 56 21 128 11 no 1.000000 4 1.000000 0.037268 0.989975 72.700000 atpI gene atpI atpI 14418 15161 -1 744 LSC 0.010305 15 0 0 53 no 1.000000 4 1.000000 0.010305 1.000000 50.900000 IGS_019 igs atpI|rps2 atpI-rps2 15162 15449 0 288 LSC 0.021991 12 8 21 6 no 1.000000 4 1.000000 0.022388 1.000000 56.300000 rps2 gene rps2 rps2 15450 16145 -1 696 LSC 0.013649 19 0 20 30 no 1.000000 4 1.000000 0.013649 1.000000 54.800000 IGS_020 igs rps2|rpoC2 rps2-rpoC2 16146 16411 0 266 LSC 0.048862 22 50 94 19 no 1.000000 4 1.000000 0.046166 0.928571 74.100000 rpoC2 gene rpoC2 rpoC2 16412 20521 -1 4110 LSC 0.018370 148 0 10 14 no 1.000000 4 1.000000 0.018370 1.000000 52.400000 IGS_021 igs rpoC2|rpoC1 rpoC2-rpoC1 20522 20699 0 178 LSC 0.025281 9 0 15 23 no 1.000000 4 1.000000 0.025281 1.000000 56.300000 rpoC1 gene rpoC1 rpoC1 20700 23553 -1 2854 LSC 0.020030 113 35 2 38 no 1.000000 4 1.000000 0.020230 0.991941 56.300000 IGS_022 igs rpoC1|rpoB rpoC1-rpoB 23554 23579 0 26 LSC 0.000000 0 0 5 12 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 rpoB gene rpoB rpoB 23580 26792 -1 3213 LSC 0.011671 73 0 31 1 no 1.000000 4 1.000000 0.011671 1.000000 48.500000 IGS_023 igs rpoB|trnC-GCA rpoB-trnC-GCA 26793 27049 0 257 LSC 0.022049 11 0 19 65 no 1.000000 4 1.000000 0.022049 1.000000 54.200000 trnC-GCA tRNA trnC-GCA trnC-GCA 27050 27120 1 71 LSC 0.007042 1 0 25 29 no 0.250000 2 0.500000 0.007042 1.000000 30.200000 IGS_024 igs trnC-GCA|petN trnC-GCA-petN 27121 27866 0 746 LSC 0.038549 55 11 5 39 no 1.000000 4 1.000000 0.038549 0.985255 72.000000 petN gene petN petN 27867 27956 1 90 LSC 0.016667 3 0 92 26 no 0.500000 3 0.666667 0.016667 1.000000 41.700000 IGS_025 igs petN|psbM petN-psbM 27957 28737 0 781 LSC 0.057832 70 60 9 18 yes 1.000000 4 1.000000 0.039683 0.933419 82.400000 psbM gene psbM psbM 28738 28842 -1 105 LSC 0.019048 4 0 19 8 no 0.500000 3 0.666667 0.019048 1.000000 42.100000 IGS_026 igs psbM|trnD-GUC psbM-trnD-GUC 28843 29908 0 1066 LSC 0.031678 65 53 32 0 no 1.000000 4 1.000000 0.032527 0.982176 71.000000 trnD-GUC tRNA trnD-GUC trnD-GUC 29909 29985 -1 77 LSC 0.012987 2 0 42 18 no 0.500000 3 0.666667 0.012987 1.000000 38.600000 IGS_027 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 29986 30399 0 414 LSC 0.039624 31 32 69 97 yes 1.000000 4 1.000000 0.039697 0.985507 77.500000 trnY-GUA tRNA trnY-GUA trnY-GUA 30400 30485 -1 86 LSC 0.000000 0 0 37 11 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_028 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 30486 30546 0 61 LSC 0.024590 3 0 123 58 no 1.000000 4 1.000000 0.024590 1.000000 59.100000 trnE-UUC tRNA trnE-UUC trnE-UUC 30547 30621 -1 75 LSC 0.006667 1 0 23 8 no 0.250000 2 0.500000 0.006667 1.000000 28.700000 IGS_029 igs trnE-UUC|trnT-GGU trnE-UUC-trnT-GGU 30622 31375 0 754 LSC 0.041556 61 17 16 4 no 1.000000 4 1.000000 0.042136 1.000000 75.500000 trnT-GGU tRNA trnT-GGU trnT-GGU 31376 31449 1 74 LSC 0.006757 1 0 12 2 no 0.250000 2 0.500000 0.006757 1.000000 28.300000 IGS_030 igs trnT-GGU|psbD trnT-GGU-psbD 31450 32412 0 963 LSC 0.020249 39 2 69 68 no 1.000000 4 1.000000 0.020286 1.000000 63.300000 psbD gene psbD psbD 32413 33474 1 1062 LSC 0.008004 17 0 3 111 no 1.000000 4 1.000000 0.008004 1.000000 49.600000 psbC gene psbC psbC 33422 34843 1 1422 LSC 0.007618 21 0 13 3 no 1.000000 4 1.000000 0.007618 1.000000 49.200000 IGS_032 igs psbC|trnS-UGA psbC-trnS-UGA 34844 34997 0 154 LSC 0.025974 8 0 24 114 no 0.250000 2 0.500000 0.025974 1.000000 43.400000 trnS-UGA tRNA trnS-UGA trnS-UGA 34998 35090 -1 93 LSC 0.000000 0 0 63 21 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 IGS_033 igs trnS-UGA|psbZ trnS-UGA-psbZ 35091 35387 0 297 LSC 0.034792 20 7 156 84 no 1.000000 4 1.000000 0.035415 1.000000 70.600000 psbZ gene psbZ psbZ 35388 35576 1 189 LSC 0.010582 4 0 4 26 no 0.250000 2 0.500000 0.010582 1.000000 31.100000 IGS_034 igs psbZ|trnG-GCC psbZ-trnG-GCC 35577 35861 0 285 LSC 0.036257 18 18 6 71 no 1.000000 4 1.000000 0.035330 0.992982 67.800000 trnG-GCC tRNA trnG-GCC trnG-GCC 35862 35933 1 72 LSC 0.006944 1 0 2 8 no 0.250000 2 0.500000 0.006944 1.000000 28.400000 IGS_035 igs trnG-GCC|trnM-CAU trnG-GCC-trnM-CAU 35934 36114 0 181 LSC 0.063536 18 13 0 109 yes 1.000000 4 1.000000 0.041822 0.955801 77.200000 trnM-CAU tRNA trnM-CAU trnM-CAU 36115 36188 -1 74 LSC 0.000000 0 0 32 35 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_036 igs trnM-CAU|rps14 trnM-CAU-rps14 36189 36337 0 149 LSC 0.016779 5 3 106 24 no 0.500000 3 0.666667 0.017077 1.000000 44.000000 rps14 gene rps14 rps14 36338 36640 -1 303 LSC 0.009901 6 0 12 38 no 1.000000 4 1.000000 0.009901 1.000000 45.400000 IGS_037 igs rps14|psaB rps14-psaB 36641 36806 0 166 LSC 0.019916 6 7 51 14 no 1.000000 4 1.000000 0.019916 0.957831 55.800000 psaB gene psaB psaB 36807 39011 -1 2205 LSC 0.008995 39 0 31 4 no 1.000000 4 1.000000 0.008995 1.000000 48.800000 IGS_038 igs psaB|psaA psaB-psaA 39012 39036 0 25 LSC 0.020000 1 0 77 8 no 0.250000 2 0.500000 0.020000 1.000000 38.000000 psaA gene psaA psaA 39037 41289 -1 2253 LSC 0.010652 48 0 20 30 no 1.000000 4 1.000000 0.010652 1.000000 51.100000 IGS_039 igs psaA|ycf3 psaA-ycf3 41290 41970 0 681 LSC 0.032646 43 20 46 12 no 1.000000 4 1.000000 0.032575 0.994126 70.500000 ycf3 gene ycf3 ycf3 41971 43917 -1 1947 LSC 0.015416 59 14 54 104 no 1.000000 4 1.000000 0.015309 0.999486 58.400000 IGS_040 igs ycf3|trnS-GGA ycf3-trnS-GGA 43918 44922 0 1005 LSC 0.031136 58 135 149 47 no 1.000000 4 1.000000 0.029911 0.994030 73.500000 trnS-GGA tRNA trnS-GGA trnS-GGA 44923 45009 1 87 LSC 0.011494 2 0 42 65 no 0.250000 2 0.500000 0.011494 1.000000 34.600000 IGS_041 igs trnS-GGA|rps4 trnS-GGA-rps4 45010 45324 0 315 LSC 0.039683 23 10 38 48 no 1.000000 4 1.000000 0.037956 0.968254 70.700000 rps4 gene rps4 rps4 45325 45930 -1 606 LSC 0.015677 19 6 42 3 no 0.500000 3 0.666667 0.015795 1.000000 46.700000 IGS_042 igs rps4|trnT-UGU rps4-trnT-UGU 45931 46325 0 395 LSC 0.028854 21 13 26 83 no 1.000000 4 1.000000 0.026948 0.977215 64.300000 trnT-UGU tRNA trnT-UGU trnT-UGU 46326 46400 -1 75 LSC 0.000000 0 0 26 8 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_043 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 46401 46883 0 483 LSC 0.028986 27 13 101 62 no 1.000000 4 1.000000 0.028724 1.000000 69.100000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 46884 46918 1 35 LSC 0.000000 0 0 2 27 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 47443 47492 1 50 LSC 0.036667 3 0 17 16 no 1.000000 4 1.000000 0.036667 1.000000 62.700000 IGS_046 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 47493 47889 0 397 LSC 0.038203 30 1 26 127 no 1.000000 4 1.000000 0.038240 1.000000 68.400000 trnF-GAA tRNA trnF-GAA trnF-GAA 47890 47963 1 74 LSC 0.000000 0 0 18 53 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 IGS_047 igs trnF-GAA|trnV-UAC trnF-GAA-trnV-UAC 47964 48400 0 437 LSC 0.043478 34 44 92 16 no 1.000000 4 1.000000 0.039225 0.981693 75.900000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 48401 48441 -1 41 LSC 0.012195 1 0 6 13 no 0.250000 2 0.500000 0.012195 1.000000 32.400000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 49060 49093 -1 34 LSC 0.000000 0 0 10 12 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_050 igs trnV-UAC|trnM-CAU trnV-UAC-trnM-CAU 49094 49274 0 181 LSC 0.024862 9 0 44 5 no 1.000000 4 1.000000 0.024862 1.000000 55.300000 trnM-CAU tRNA trnM-CAU trnM-CAU 49275 49347 1 73 LSC 0.006849 1 0 18 17 no 0.250000 2 0.500000 0.006849 1.000000 29.500000 IGS_051 igs trnM-CAU|atpE trnM-CAU-atpE 49348 49556 0 209 LSC 0.033493 14 0 67 60 no 1.000000 4 1.000000 0.033493 1.000000 65.400000 atpE gene atpE atpE 49557 49958 -1 402 LSC 0.014925 12 0 5 5 no 1.000000 4 1.000000 0.014925 1.000000 50.400000 atpB gene atpB atpB 49955 51457 -1 1503 LSC 0.011643 35 6 0 18 no 1.000000 4 1.000000 0.011680 1.000000 52.400000 IGS_053 igs atpB|rbcL atpB-rbcL 51458 52231 0 774 LSC 0.023316 35 15 86 27 no 1.000000 4 1.000000 0.023188 0.994832 64.100000 rbcL gene rbcL rbcL 52232 53659 1 1428 LSC 0.011555 33 0 78 2 no 1.000000 4 1.000000 0.011555 1.000000 52.000000 IGS_054 igs rbcL|accD rbcL-accD 53660 54389 0 730 LSC 0.036832 52 15 20 76 no 1.000000 4 1.000000 0.037192 0.991781 72.900000 accD gene accD accD 54390 55889 1 1500 LSC 0.019634 57 15 14 71 no 1.000000 4 1.000000 0.019731 0.996000 59.400000 IGS_055 igs accD|psaI accD-psaI 55890 56397 0 508 LSC 0.032990 32 43 2 45 no 1.000000 4 1.000000 0.034312 0.942913 68.800000 psaI gene psaI psaI 56398 56508 1 111 LSC 0.013514 3 0 15 5 no 0.500000 3 0.666667 0.013514 1.000000 38.000000 IGS_056 igs psaI|ycf4 psaI-ycf4 56509 56878 0 370 LSC 0.027928 20 11 24 43 no 1.000000 4 1.000000 0.028259 1.000000 63.600000 ycf4 gene ycf4 ycf4 56879 57439 1 561 LSC 0.013369 15 0 7 6 no 1.000000 4 1.000000 0.013369 1.000000 52.700000 IGS_057 igs ycf4|cemA ycf4-cemA 57440 58129 0 690 LSC 0.052899 70 23 44 11 yes 1.000000 4 1.000000 0.053036 1.000000 83.500000 cemA gene cemA cemA 58130 58819 1 690 LSC 0.016667 23 0 10 8 no 1.000000 4 1.000000 0.016667 1.000000 56.000000 IGS_058 igs cemA|petA cemA-petA 58820 59055 0 236 LSC 0.040254 17 0 45 46 no 1.000000 4 1.000000 0.040254 1.000000 68.000000 petA gene petA petA 59056 60021 1 966 LSC 0.013285 24 0 9 3 no 1.000000 4 1.000000 0.013285 1.000000 53.100000 IGS_059 igs petA|psbJ petA-psbJ 60022 60500 0 479 LSC 0.048273 42 22 18 146 yes 1.000000 4 1.000000 0.044143 0.985386 80.300000 psbJ gene psbJ psbJ 60501 60623 -1 123 LSC 0.000000 0 0 19 23 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_060 igs psbJ|psbL psbJ-psbL 60624 60755 0 132 LSC 0.030303 8 0 142 18 no 1.000000 4 1.000000 0.030303 1.000000 60.100000 psbL gene psbL psbL 60756 60872 -1 117 LSC 0.008547 2 0 6 25 no 0.500000 3 0.666667 0.008547 1.000000 34.600000 IGS_061 igs psbL|psbF psbL-psbF 60873 60901 0 29 LSC 0.017241 1 0 62 155 no 0.250000 2 0.500000 0.017241 1.000000 40.200000 psbF gene psbF psbF 60902 61021 -1 120 LSC 0.000000 0 0 3 35 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_062 igs psbF|psbE psbF-psbE 61022 61030 0 9 LSC 0.000000 0 0 123 26 no 0.000000 1 0.000000 NA 1.000000 20.700000 psbE gene psbE psbE 61031 61282 -1 252 LSC 0.007937 4 0 132 1 no 0.500000 3 0.666667 0.007937 1.000000 33.800000 IGS_063 igs psbE|petL psbE-petL 61283 62388 0 1106 LSC 0.034961 76 24 14 33 no 1.000000 4 1.000000 0.034922 1.000000 71.700000 petL gene petL petL 62389 62484 1 96 LSC 0.027778 4 0 6 38 no 1.000000 4 1.000000 0.027778 1.000000 55.700000 IGS_064 igs petL|petG petL-petG 62485 62627 0 143 LSC 0.029138 8 4 19 29 no 1.000000 4 1.000000 0.029866 0.993007 62.200000 petG gene petG petG 62628 62741 1 114 LSC 0.008772 2 0 19 5 no 0.250000 2 0.500000 0.008772 1.000000 30.000000 IGS_065 igs petG|trnW-CCA petG-trnW-CCA 62742 62862 0 121 LSC 0.020661 5 0 48 31 no 0.500000 3 0.666667 0.020661 1.000000 44.900000 trnW-CCA tRNA trnW-CCA trnW-CCA 62863 62936 -1 74 LSC 0.013514 2 0 3 37 no 0.500000 3 0.666667 0.013514 1.000000 37.800000 IGS_066 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 62937 63143 0 207 LSC 0.030988 11 13 20 152 no 1.000000 4 1.000000 0.031571 0.961353 64.300000 trnP-UGG tRNA trnP-UGG trnP-UGG 63144 63217 -1 74 LSC 0.000000 0 0 25 78 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_067 igs trnP-UGG|psaJ trnP-UGG-psaJ 63218 63591 0 374 LSC 0.020499 15 2 99 35 no 1.000000 4 1.000000 0.020581 1.000000 56.500000 psaJ gene psaJ psaJ 63592 63726 1 135 LSC 0.014815 4 0 71 7 no 0.500000 3 0.666667 0.014815 1.000000 39.000000 IGS_068 igs psaJ|rpl33 psaJ-rpl33 63727 64146 0 420 LSC 0.041667 33 12 7 9 no 1.000000 4 1.000000 0.038605 0.990476 72.300000 rpl33 gene rpl33 rpl33 64147 64350 1 204 LSC 0.022059 9 0 5 6 no 1.000000 4 1.000000 0.022059 1.000000 53.300000 IGS_069 igs rpl33|rps18 rpl33-rps18 64351 64514 0 164 LSC 0.041667 12 44 45 26 no 1.000000 4 1.000000 0.046917 1.000000 71.500000 rps18 gene rps18 rps18 64515 64820 1 306 LSC 0.009804 6 0 29 5 no 0.250000 2 0.500000 0.009804 1.000000 30.800000 IGS_070 igs rps18|rpl20 rps18-rpl20 64821 65081 0 261 LSC 0.034121 17 30 4 107 no 1.000000 4 1.000000 0.036188 0.973180 65.900000 rpl20 gene rpl20 rpl20 65082 65435 -1 354 LSC 0.014124 9 0 13 1 no 1.000000 4 1.000000 0.014124 1.000000 48.200000 IGS_071 igs rpl20|rps12 rpl20-rps12 65436 66207 0 772 LSC 0.033247 49 0 74 84 no 1.000000 4 1.000000 0.033247 1.000000 72.200000 rps12_part1 gene rps12 rps12 66208 66321 -1 114 LSC 0.004386 1 0 38 70 no 0.250000 2 0.500000 0.004386 1.000000 29.400000 IGS_072 igs rps12|clpP1 rps12-clpP1 66322 66467 0 146 LSC 0.027397 7 0 29 99 no 1.000000 4 1.000000 0.027397 1.000000 58.000000 clpP1 gene clpP1 clpP1 66468 68523 -1 2056 LSC 0.021968 85 85 7 20 no 1.000000 4 1.000000 0.021700 0.995623 62.900000 IGS_073 igs clpP1|psbB clpP1-psbB 68524 68967 0 444 LSC 0.023326 20 1 60 128 no 1.000000 4 1.000000 0.023326 0.997748 61.300000 psbB gene psbB psbB 68968 70494 1 1527 LSC 0.012552 38 0 9 34 no 1.000000 4 1.000000 0.012552 1.000000 53.100000 IGS_074 igs psbB|psbT psbB-psbT 70495 70707 0 213 LSC 0.023474 10 1 3 23 no 1.000000 4 1.000000 0.023533 1.000000 54.700000 psbT gene psbT psbT 70708 70812 1 105 LSC 0.014286 3 0 35 31 no 0.500000 3 0.666667 0.014286 1.000000 40.400000 IGS_075 igs psbT|psbN psbT-psbN 70813 70872 0 60 LSC 0.016667 2 0 18 6 no 0.250000 2 0.500000 0.016667 1.000000 35.600000 psbN gene psbN psbN 70873 71004 -1 132 LSC 0.018939 5 0 18 35 no 1.000000 4 1.000000 0.018939 1.000000 52.100000 IGS_076 igs psbN|psbH psbN-psbH 71005 71106 0 102 LSC 0.014706 3 0 14 13 no 0.500000 3 0.666667 0.014706 1.000000 39.400000 psbH gene psbH psbH 71107 71328 1 222 LSC 0.011261 5 0 59 3 no 1.000000 4 1.000000 0.011261 1.000000 45.600000 IGS_077 igs psbH|petB psbH-petB 71329 71424 0 96 LSC 0.020833 4 0 71 49 no 0.250000 2 0.500000 0.020833 1.000000 41.700000 petB gene petB petB 71425 72863 1 1439 LSC 0.022385 63 5 66 10 no 1.000000 4 1.000000 0.022419 0.997220 60.400000 IGS_078 igs petB|petD petB-petD 72864 73057 0 194 LSC 0.012887 5 1 12 69 no 1.000000 4 1.000000 0.012940 0.994845 47.900000 petD gene petD petD 73058 74249 1 1192 LSC 0.019096 43 5 13 21 no 1.000000 4 1.000000 0.019096 0.995805 58.200000 IGS_079 igs petD|rpoA petD-rpoA 74250 74393 0 144 LSC 0.025463 7 1 67 1 no 1.000000 4 1.000000 0.025592 1.000000 55.900000 rpoA gene rpoA rpoA 74394 75404 -1 1011 LSC 0.019123 38 0 2 1 no 1.000000 4 1.000000 0.019123 1.000000 57.100000 IGS_080 igs rpoA|rps11 rpoA-rps11 75405 75469 0 65 LSC 0.015385 2 0 11 42 no 0.500000 3 0.666667 0.015385 1.000000 39.700000 rps11 gene rps11 rps11 75470 75886 -1 417 LSC 0.010791 9 0 11 7 no 1.000000 4 1.000000 0.010791 1.000000 48.000000 IGS_081 igs rps11|rpl36 rps11-rpl36 75887 76008 0 122 LSC 0.032787 7 0 21 44 no 1.000000 4 1.000000 0.032787 1.000000 61.000000 rpl36 gene rpl36 rpl36 76009 76122 -1 114 LSC 0.013158 3 0 5 18 no 0.500000 3 0.666667 0.013158 1.000000 37.700000 IGS_082 igs rpl36|rps8 rpl36-rps8 76123 76284 0 162 LSC 0.036008 10 61 18 93 no 1.000000 4 1.000000 0.030070 1.000000 66.100000 rps8 gene rps8 rps8 76285 76692 -1 408 LSC 0.016340 13 0 30 26 no 1.000000 4 1.000000 0.016340 1.000000 53.000000 IGS_083 igs rps8|rpl14 rps8-rpl14 76693 76843 0 151 LSC 0.032009 9 0 11 12 no 0.500000 3 0.666667 0.032009 1.000000 50.800000 rpl14 gene rpl14 rpl14 76844 77212 -1 369 LSC 0.017615 13 0 3 31 no 1.000000 4 1.000000 0.017615 1.000000 51.500000 IGS_084 igs rpl14|rpl16 rpl14-rpl16 77213 77339 0 127 LSC 0.047244 11 13 57 0 no 1.000000 4 1.000000 0.044772 0.913386 73.300000 rpl16 gene rpl16 rpl16 77340 78757 -1 1418 LSC 0.027386 72 60 5 15 no 1.000000 4 1.000000 0.026817 0.995769 67.700000 IGS_085 igs rpl16|rps3 rpl16-rps3 78758 78938 0 181 LSC 0.058932 21 6 58 78 yes 1.000000 4 1.000000 0.060700 1.000000 80.700000 rps3 gene rps3 rps3 78939 79595 -1 657 LSC 0.017504 23 0 0 11 no 1.000000 4 1.000000 0.017504 1.000000 56.000000 rpl22 gene rpl22 rpl22 79580 80059 -1 480 LSC 0.031944 30 0 34 19 no 1.000000 4 1.000000 0.031944 1.000000 64.900000 IGS_087 igs rpl22|rps19 rpl22-rps19 80060 80133 0 74 LSC 0.022059 3 15 1 28 no 1.000000 4 1.000000 0.023400 0.918919 55.000000 rps19 gene rps19 rps19 80134 80412 -1 279 LSC 0.019713 11 0 12 19 no 1.000000 4 1.000000 0.019713 1.000000 52.200000 IGS_088 igs rps19|rpl2 rps19-rpl2 80413 80479 0 67 IRb 0.059701 8 4 23 30 no 0.500000 3 0.666667 0.063176 1.000000 70.600000 rpl2 gene rpl2 rpl2 80480 81969 -1 1490 IRb 0.002013 6 0 0 300 no 0.500000 3 0.666667 0.002013 1.000000 35.800000 IGS_089 igs rpl2|rpl23 rpl2-rpl23 81970 81987 0 18 IRb 0.000000 0 0 195 300 no 0.000000 1 0.000000 NA 1.000000 33.400000 rpl23 gene rpl23 rpl23 81988 82269 -1 282 IRb 0.000000 0 0 213 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_090 igs rpl23|trnM-CAU rpl23-trnM-CAU 82270 82433 0 164 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnM-CAU tRNA trnM-CAU trnM-CAU 82434 82508 -1 75 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_091 igs trnM-CAU|ycf2 trnM-CAU-ycf2 82509 82596 0 88 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf2 gene ycf2 ycf2 82597 89454 1 6858 IRb 0.003791 51 30 300 23 no 1.000000 4 1.000000 0.003804 1.000000 42.400000 IGS_092 igs ycf2|ndhB ycf2-ndhB 89455 90111 0 657 IRb 0.004566 6 15 49 6 no 1.000000 4 1.000000 0.004629 1.000000 50.100000 ndhB gene ndhB ndhB 90112 91503 -1 1392 IRb 0.006475 18 16 4 125 no 1.000000 4 1.000000 0.006526 0.998563 49.900000 trnL-CAA tRNA trnL-CAA trnL-CAA 90181 90263 -1 83 IRb 0.000000 0 0 61 215 no 0.000000 1 0.000000 0.000000 1.000000 23.300000 IGS_094 igs trnL-CAA|rps7 trnL-CAA-rps7 90264 91825 0 1562 IRb 0.007372 23 36 144 300 no 1.000000 4 1.000000 0.007497 0.998720 62.200000 rps7 gene rps7 rps7 91826 92293 -1 468 IRb 0.001068 1 0 14 27 no 0.250000 2 0.500000 0.001068 1.000000 28.700000 IGS_095 igs rps7|rps12 rps7-rps12 92294 92343 0 50 IRb 0.010000 1 0 35 115 no 0.250000 2 0.500000 0.010000 1.000000 33.100000 rps12_part2 gene rps12 rps12 92344 93143 -1 800 IRb 0.002500 4 0 22 174 no 0.250000 2 0.500000 0.002500 1.000000 33.100000 IGS_096 igs rps12|trnV-GAC rps12-trnV-GAC 93144 94865 0 1722 IRb 0.010405 35 132 45 84 no 1.000000 4 1.000000 0.011049 0.995354 59.400000 trnV-GAC tRNA trnV-GAC trnV-GAC 94866 94937 1 72 IRb 0.000000 0 0 94 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_097 igs trnV-GAC|rrn16 trnV-GAC-rrn16 94938 95179 0 242 IRb 0.006198 3 0 166 103 no 0.500000 3 0.666667 0.006198 1.000000 40.200000 rrn16 rRNA rrn16 rrn16 95180 96670 1 1491 IRb 0.001341 4 0 159 209 no 1.000000 4 1.000000 0.001341 1.000000 56.600000 IGS_098 igs rrn16|trnI-GAU rrn16-trnI-GAU 96671 96968 0 298 IRb 0.003356 2 5 209 165 no 0.250000 2 0.500000 0.003413 1.000000 40.100000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 96969 97000 1 32 IRb 0.000000 0 0 70 133 no 0.000000 1 0.000000 0.000000 1.000000 24.000000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 97952 97991 1 40 IRb 0.000000 0 0 40 35 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_101 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 97992 98055 0 64 IRb 0.007812 1 0 80 157 no 0.250000 2 0.500000 0.007812 1.000000 34.900000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 98056 98092 1 37 IRb 0.000000 0 0 28 120 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 98905 98940 1 36 IRb 0.000000 0 0 142 55 no 0.000000 1 0.000000 0.000000 1.000000 22.900000 IGS_104 igs trnA-UGC|rrn23 trnA-UGC-rrn23 98941 99131 0 191 IRb 0.002618 1 11 178 9 no 0.500000 3 0.666667 0.002671 1.000000 36.400000 rrn23 rRNA rrn23 rrn23 99132 101931 1 2800 IRb 0.000774 4 0 135 155 no 0.500000 3 0.666667 0.000774 1.000000 42.300000 IGS_105 igs rrn23|rrn4.5 rrn23-rrn4.5 101932 102030 0 99 IRb 0.000000 0 0 300 56 no 0.000000 1 0.000000 0.000000 1.000000 22.900000 rrn4.5 rRNA rrn4.5 rrn4.5 102031 102133 1 103 IRb 0.004854 1 0 300 77 no 0.250000 2 0.500000 0.004854 1.000000 32.600000 IGS_106 igs rrn4.5|rrn5 rrn4.5-rrn5 102134 102361 0 228 IRb 0.008772 4 1 46 135 no 1.000000 4 1.000000 0.008798 1.000000 47.600000 rrn5 rRNA rrn5 rrn5 102362 102482 1 121 IRb 0.000000 0 0 16 14 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_107 igs rrn5|trnR-ACG rrn5-trnR-ACG 102483 102733 0 251 IRb 0.016600 8 111 137 94 no 0.500000 3 0.666667 0.025550 1.000000 49.400000 trnR-ACG tRNA trnR-ACG trnR-ACG 102734 102808 1 75 IRb 0.000000 0 0 16 19 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_108 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 102809 103382 0 574 IRb 0.020906 21 138 91 155 no 1.000000 4 1.000000 0.021659 1.000000 68.400000 trnN-GUU tRNA trnN-GUU trnN-GUU 103383 103456 -1 74 IRb 0.000000 0 0 114 81 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 IGS_109 igs trnN-GUU|ycf1 trnN-GUU-ycf1 103457 103777 0 321 IRb 0.008307 5 9 188 8 no 1.000000 4 1.000000 0.008427 1.000000 47.500000 ycf1 gene ycf1 ycf1 103778 104299 1 522 IRb 0.038314 38 28 57 1 no 1.000000 4 1.000000 0.037973 0.978927 73.900000 IGS_110 igs ycf1|rpl32 ycf1-rpl32 104300 104411 0 112 SSC 0.110119 20 4 10 27 yes 1.000000 4 1.000000 0.103175 1.000000 77.400000 rpl32 gene rpl32 rpl32 104412 104564 1 153 SSC 0.023965 7 0 1 5 no 1.000000 4 1.000000 0.023965 1.000000 54.100000 IGS_111 igs rpl32|trnL-UAG rpl32-trnL-UAG 104565 105065 0 501 SSC 0.097782 85 54 27 2 yes 1.000000 4 1.000000 0.093215 0.934132 80.800000 trnL-UAG tRNA trnL-UAG trnL-UAG 105066 105145 1 80 SSC 0.014583 2 0 19 7 no 0.500000 3 0.666667 0.014583 1.000000 38.300000 IGS_112 igs trnL-UAG|ccsA trnL-UAG-ccsA 105146 105248 0 103 SSC 0.075163 13 2 30 56 no 1.000000 4 1.000000 0.070601 0.990291 76.800000 ccsA gene ccsA ccsA 105249 106217 1 969 SSC 0.038528 71 1 2 27 no 1.000000 4 1.000000 0.038558 0.998968 70.500000 IGS_113 igs ccsA|psaC ccsA-psaC 106218 106533 0 316 SSC 0.057489 34 9 3 11 no 1.000000 4 1.000000 0.055999 0.984177 76.100000 psaC gene psaC psaC 106534 106779 -1 246 SSC 0.012195 6 0 15 1 no 1.000000 4 1.000000 0.012195 1.000000 46.100000 IGS_114 igs psaC|rps15 psaC-rps15 106780 107412 0 633 SSC 0.057150 64 48 38 34 yes 1.000000 4 1.000000 0.053488 0.960506 86.100000 rps15 gene rps15 rps15 107413 107685 -1 273 SSC 0.026252 13 0 2 2 no 1.000000 4 1.000000 0.026252 1.000000 55.400000 IGS_115 igs rps15|ycf1 rps15-ycf1 107686 108024 0 339 SSC 0.066863 42 11 3 43 yes 1.000000 4 1.000000 0.067402 1.000000 77.300000 ycf1 gene ycf1 ycf1 108025 113616 -1 5592 SSC 0.043764 465 48 4 57 yes 1.000000 4 1.000000 0.043812 0.997318 68.800000 IGS_116 igs ycf1|trnN-GUU ycf1-trnN-GUU 113617 113937 0 321 IRa 0.008307 5 9 8 188 no 1.000000 4 1.000000 0.008427 1.000000 47.500000 trnN-GUU tRNA trnN-GUU trnN-GUU 113938 114011 1 74 IRa 0.000000 0 0 81 114 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 IGS_117 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 114012 114585 0 574 IRa 0.020906 21 138 155 91 no 1.000000 4 1.000000 0.021659 1.000000 68.400000 trnR-ACG tRNA trnR-ACG trnR-ACG 114586 114660 -1 75 IRa 0.000000 0 0 19 16 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_118 igs trnR-ACG|rrn5 trnR-ACG-rrn5 114661 114911 0 251 IRa 0.016600 8 111 94 137 no 0.500000 3 0.666667 0.025550 1.000000 49.400000 rrn5 rRNA rrn5 rrn5 114912 115032 -1 121 IRa 0.000000 0 0 14 16 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_119 igs rrn5|rrn4.5 rrn5-rrn4.5 115033 115260 0 228 IRa 0.008772 4 1 135 46 no 1.000000 4 1.000000 0.008798 1.000000 47.600000 rrn4.5 rRNA rrn4.5 rrn4.5 115261 115363 -1 103 IRa 0.004854 1 0 77 300 no 0.250000 2 0.500000 0.004854 1.000000 32.600000 IGS_120 igs rrn4.5|rrn23 rrn4.5-rrn23 115364 115462 0 99 IRa 0.000000 0 0 56 300 no 0.000000 1 0.000000 0.000000 1.000000 22.900000 rrn23 rRNA rrn23 rrn23 115463 118262 -1 2800 IRa 0.000774 4 0 155 135 no 0.500000 3 0.666667 0.000774 1.000000 42.300000 IGS_121 igs rrn23|trnA-UGC rrn23-trnA-UGC 118263 118453 0 191 IRa 0.002618 1 11 9 178 no 0.500000 3 0.666667 0.002671 1.000000 36.400000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 118454 118489 -1 36 IRa 0.000000 0 0 55 142 no 0.000000 1 0.000000 0.000000 1.000000 22.900000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 119302 119338 -1 37 IRa 0.000000 0 0 120 28 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_124 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 119339 119402 0 64 IRa 0.007812 1 0 157 80 no 0.250000 2 0.500000 0.007812 1.000000 34.900000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 119403 119442 -1 40 IRa 0.000000 0 0 35 40 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 120394 120425 -1 32 IRa 0.000000 0 0 133 70 no 0.000000 1 0.000000 0.000000 1.000000 24.000000 IGS_127 igs trnI-GAU|rrn16 trnI-GAU-rrn16 120426 120723 0 298 IRa 0.003356 2 5 165 209 no 0.250000 2 0.500000 0.003413 1.000000 40.100000 rrn16 rRNA rrn16 rrn16 120724 122214 -1 1491 IRa 0.001341 4 0 209 159 no 1.000000 4 1.000000 0.001341 1.000000 56.600000 IGS_128 igs rrn16|trnV-GAC rrn16-trnV-GAC 122215 122456 0 242 IRa 0.006198 3 0 103 166 no 0.500000 3 0.666667 0.006198 1.000000 40.200000 trnV-GAC tRNA trnV-GAC trnV-GAC 122457 122528 -1 72 IRa 0.000000 0 0 12 94 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_129 igs trnV-GAC|rps12 trnV-GAC-rps12 122529 124250 0 1722 IRa 0.010405 35 132 84 45 no 1.000000 4 1.000000 0.011049 0.995354 59.400000 rps12_part2 gene rps12 rps12 124251 125050 1 800 IRa 0.002500 4 0 174 22 no 0.250000 2 0.500000 0.002500 1.000000 33.100000 IGS_130 igs rps12|rps7 rps12-rps7 125051 125100 0 50 IRa 0.010000 1 0 115 35 no 0.250000 2 0.500000 0.010000 1.000000 33.100000 rps7 gene rps7 rps7 125101 125568 1 468 IRa 0.001068 1 0 27 14 no 0.250000 2 0.500000 0.001068 1.000000 28.700000 IGS_131 igs rps7|ndhB rps7-ndhB 125569 125896 0 328 IRa 0.010671 7 20 300 46 no 1.000000 4 1.000000 0.011160 1.000000 54.800000 ndhB gene ndhB ndhB 125897 127282 1 1386 IRa 0.007225 20 16 131 4 no 1.000000 4 1.000000 0.007280 0.998557 50.400000 trnL-CAA tRNA trnL-CAA trnL-CAA 127131 127213 1 83 IRa 0.000000 0 0 215 61 no 0.000000 1 0.000000 0.000000 1.000000 23.300000 IGS_133 igs trnL-CAA|ycf2 trnL-CAA-ycf2 127214 127939 0 726 IRa 0.005510 8 15 298 49 no 1.000000 4 1.000000 0.005571 1.000000 53.700000 ycf2 gene ycf2 ycf2 127940 134797 -1 6858 IRa 0.003791 51 30 23 300 no 1.000000 4 1.000000 0.003804 1.000000 42.400000 IGS_134 igs ycf2|trnM-CAU ycf2-trnM-CAU 134798 134885 0 88 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnM-CAU tRNA trnM-CAU trnM-CAU 134886 134960 1 75 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_135 igs trnM-CAU|rpl23 trnM-CAU-rpl23 134961 135124 0 164 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl23 gene rpl23 rpl23 135125 135406 1 282 IRa 0.000000 0 0 300 213 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_136 igs rpl23|rpl2 rpl23-rpl2 135407 135424 0 18 IRa 0.000000 0 0 300 195 no 0.000000 1 0.000000 NA 1.000000 33.400000 rpl2 gene rpl2 rpl2 135425 136914 1 1490 IRa 0.002013 6 0 300 0 no 0.500000 3 0.666667 0.002013 1.000000 35.800000 IGS_137 igs rpl2|rps19 rpl2-rps19 136915 136981 0 67 IRa 0.059701 8 4 30 23 no 0.500000 3 0.666667 0.063176 1.000000 70.600000 rps19 gene rps19 rps19 136982 137095 1 114 IRa 0.017544 4 2 19 16 no 0.250000 2 0.500000 0.017857 1.000000 39.000000 IGS_138 igs rps19|trnH-GUG rps19-trnH-GUG 137096 16 0 16 LSC 0.000000 0 16 44 0 no 0.500000 3 0.666667 NA 0.062500 16.400000