feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score psbA gene psbA psbA 113 1174 -1 1062 LSC 0.004394 7 0 0 12 no 1.000000 3 1.000000 0.004394 1.000000 46.600000 IGS_001 igs psbA|trnK-UUU psbA-trnK-UUU 1175 1489 0 315 LSC 0.023280 11 0 300 134 no 1.000000 3 1.000000 0.023280 1.000000 62.700000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 1490 1524 -1 35 LSC 0.000000 0 0 18 99 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 matK gene matK matK 1780 3321 -1 1542 LSC 0.019248 44 18 25 12 no 1.000000 3 1.000000 0.019248 0.988327 57.900000 IGS_004 igs matK|trnK-UUU matK-trnK-UUU 3322 4103 0 782 LSC 0.009378 11 13 147 44 no 1.000000 3 1.000000 0.009479 1.000000 54.900000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 4104 4140 -1 37 LSC 0.000000 0 0 35 7 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_005 igs trnK-UUU|trnQ-UUG trnK-UUU-trnQ-UUG 4141 4764 0 624 LSC 0.028058 25 31 72 74 no 1.000000 3 1.000000 0.028087 0.951923 71.400000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 4765 4836 -1 72 LSC 0.000000 0 0 83 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_006 igs trnQ-UUG|psbK trnQ-UUG-psbK 4837 5548 0 712 LSC 0.028694 30 15 155 80 no 1.000000 3 1.000000 0.028694 0.978933 69.900000 psbK gene psbK psbK 5549 5734 1 186 LSC 0.010753 3 0 23 15 no 1.000000 3 1.000000 0.010753 1.000000 45.500000 IGS_007 igs psbK|psbI psbK-psbI 5735 6218 0 484 LSC 0.026667 18 34 1 28 no 1.000000 3 1.000000 0.026667 0.929752 62.000000 psbI gene psbI psbI 6219 6329 1 111 LSC 0.006006 1 0 47 25 no 0.333333 2 0.500000 0.006006 1.000000 30.700000 IGS_008 igs psbI|trnS-GCU psbI-trnS-GCU 6330 6504 0 175 LSC 0.011429 3 17 82 0 no 1.000000 3 1.000000 0.012248 1.000000 50.000000 trnS-GCU tRNA trnS-GCU trnS-GCU 6505 6592 -1 88 LSC 0.007576 1 0 50 6 no 0.333333 2 0.500000 0.007576 1.000000 30.300000 IGS_009 igs trnS-GCU|trnG-UCC trnS-GCU-trnG-UCC 6593 7436 0 844 LSC 0.037125 47 6 87 74 no 1.000000 3 1.000000 0.037283 1.000000 73.800000 trnG-UCC_part1 tRNA trnG-UCC trnG-UCC 7437 7459 1 23 LSC 0.000000 0 0 8 51 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 trnG-UCC_part2 tRNA trnG-UCC trnG-UCC 8172 8208 1 37 LSC 0.000000 0 3 115 6 no 0.333333 2 0.500000 0.000000 0.918919 29.000000 IGS_012 igs trnG-UCC|trnR-UCU trnG-UCC-trnR-UCU 8209 8570 0 362 LSC 0.035581 19 15 152 31 no 1.000000 3 1.000000 0.036212 0.983425 68.100000 trnR-UCU tRNA trnR-UCU trnR-UCU 8571 8642 1 72 LSC 0.018519 2 0 69 35 no 0.333333 2 0.500000 0.018519 1.000000 39.400000 IGS_013 igs trnR-UCU|atpA trnR-UCU-atpA 8643 9004 0 362 LSC 0.053407 29 21 0 27 yes 1.000000 3 1.000000 0.056016 1.000000 77.000000 atpA gene atpA atpA 9005 10528 -1 1524 LSC 0.034777 78 0 3 9 no 1.000000 3 1.000000 0.034777 1.000000 66.000000 IGS_014 igs atpA|atpF atpA-atpF 10529 10584 0 56 LSC 0.023810 2 0 44 12 no 0.333333 2 0.500000 0.023810 1.000000 41.100000 atpF gene atpF atpF 10585 11898 -1 1314 LSC 0.023338 46 1 3 77 no 1.000000 3 1.000000 0.023348 1.000000 58.900000 IGS_015 igs atpF|atpH atpF-atpH 11899 12375 0 477 LSC 0.026638 18 28 26 77 no 1.000000 3 1.000000 0.025736 0.970650 64.800000 atpH gene atpH atpH 12376 12621 -1 246 LSC 0.027100 10 0 82 13 no 0.333333 2 0.500000 0.027100 1.000000 43.300000 IGS_016 igs atpH|atpI atpH-atpI 12622 13251 0 630 LSC 0.027640 25 40 47 33 no 1.000000 3 1.000000 0.028200 0.957143 68.200000 atpI gene atpI atpI 13252 13995 -1 744 LSC 0.008065 9 0 49 108 no 1.000000 3 1.000000 0.008065 1.000000 52.600000 IGS_017 igs atpI|rps2 atpI-rps2 13996 14180 0 185 LSC 0.019048 5 10 41 77 no 1.000000 3 1.000000 0.019048 0.945946 57.000000 rps2 gene rps2 rps2 14181 14891 -1 711 LSC 0.014065 15 0 13 127 no 0.333333 2 0.500000 0.014065 1.000000 41.200000 IGS_018 igs rps2|rpoC2 rps2-rpoC2 14892 15209 0 318 LSC 0.014675 7 5 42 11 no 0.333333 2 0.500000 0.014909 1.000000 37.400000 rpoC2 gene rpoC2 rpoC2 15210 19391 -1 4182 LSC 0.038671 240 11 27 6 no 1.000000 3 1.000000 0.038676 0.997609 64.100000 IGS_019 igs rpoC2|rpoC1 rpoC2-rpoC1 19392 19559 0 168 LSC 0.031746 8 4 4 21 no 1.000000 3 1.000000 0.032230 1.000000 60.800000 rpoC1 gene rpoC1 rpoC1 19560 22409 -1 2850 LSC 0.035112 145 3 9 2 no 1.000000 3 1.000000 0.035121 0.999298 63.400000 IGS_020 igs rpoC1|rpoB rpoC1-rpoB 22410 22427 0 18 LSC 0.074074 2 0 27 11 no 0.333333 2 0.500000 NA 1.000000 60.800000 rpoB gene rpoB rpoB 22428 25646 -1 3219 LSC 0.031815 151 14 2 9 no 1.000000 3 1.000000 0.031821 0.995961 61.000000 IGS_021 igs rpoB|trnC-GCA rpoB-trnC-GCA 25647 26945 0 1299 LSC 0.036624 69 49 21 83 no 1.000000 3 1.000000 0.036753 0.966898 72.000000 trnC-GCA tRNA trnC-GCA trnC-GCA 26946 27017 1 72 LSC 0.000000 0 0 0 11 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_022 igs trnC-GCA|petN trnC-GCA-petN 27018 27724 0 707 LSC 0.020745 22 6 72 122 no 0.333333 2 0.500000 0.020922 1.000000 50.800000 petN gene petN petN 27725 27823 1 99 LSC 0.000000 0 0 19 23 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_023 igs petN|psbM petN-psbM 27824 28511 0 688 LSC 0.038123 39 17 118 253 yes 1.000000 3 1.000000 0.038492 0.991279 79.500000 psbM gene psbM psbM 28512 28616 -1 105 LSC 0.000000 0 0 62 148 no 0.000000 1 0.000000 0.000000 1.000000 23.400000 IGS_024 igs psbM|trnD-GUC psbM-trnD-GUC 28617 29562 0 946 LSC 0.016649 23 30 167 81 no 1.000000 3 1.000000 0.016311 0.994715 63.900000 trnD-GUC tRNA trnD-GUC trnD-GUC 29563 29636 -1 74 LSC 0.000000 0 0 60 7 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_025 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 29637 29806 0 170 LSC 0.015686 4 0 134 106 no 0.333333 2 0.500000 0.015686 1.000000 42.900000 trnY-GUA tRNA trnY-GUA trnY-GUA 29807 29890 -1 84 LSC 0.000000 0 0 13 22 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_026 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 29891 29950 0 60 LSC 0.011111 1 0 97 143 no 0.333333 2 0.500000 0.011111 1.000000 39.400000 trnE-UUC tRNA trnE-UUC trnE-UUC 29951 30024 -1 74 LSC 0.000000 0 0 37 69 no 0.000000 1 0.000000 0.000000 1.000000 21.500000 IGS_027 igs trnE-UUC|trnT-GGU trnE-UUC-trnT-GGU 30025 30900 0 876 LSC 0.041522 50 75 111 5 no 1.000000 3 1.000000 0.037431 0.989726 75.100000 trnT-GGU tRNA trnT-GGU trnT-GGU 30901 30972 1 72 LSC 0.009259 1 0 8 11 no 0.333333 2 0.500000 0.009259 1.000000 31.500000 IGS_028 igs trnT-GGU|psbD trnT-GGU-psbD 30973 32031 0 1059 LSC 0.020913 33 14 66 6 no 1.000000 3 1.000000 0.021038 0.993390 58.900000 psbD gene psbD psbD 32032 33093 1 1062 LSC 0.046453 74 0 3 0 no 1.000000 3 1.000000 0.046453 1.000000 73.400000 psbC gene psbC psbC 33041 34465 1 1425 LSC 0.040788 87 3 16 32 no 1.000000 3 1.000000 0.040788 0.997895 71.100000 IGS_030 igs psbC|trnS-UGA psbC-trnS-UGA 34466 34711 0 246 LSC 0.035230 13 0 19 16 no 1.000000 3 1.000000 0.035230 1.000000 61.200000 trnS-UGA tRNA trnS-UGA trnS-UGA 34712 34798 -1 87 LSC 0.022989 3 0 28 22 no 0.333333 2 0.500000 0.022989 1.000000 41.300000 IGS_031 igs trnS-UGA|psbZ trnS-UGA-psbZ 34799 35171 0 373 LSC 0.012511 7 5 52 113 no 1.000000 3 1.000000 0.012632 1.000000 52.400000 psbZ gene psbZ psbZ 35172 35345 1 174 LSC 0.003831 1 1 23 111 no 1.000000 3 1.000000 0.003842 1.000000 42.300000 IGS_032 igs psbZ|trnG-GCC psbZ-trnG-GCC 35346 36241 0 896 LSC 0.019101 25 13 60 125 no 1.000000 3 1.000000 0.018466 0.993304 61.800000 trnG-GCC tRNA trnG-GCC trnG-GCC 36242 36312 1 71 LSC 0.000000 0 0 1 54 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_033 igs trnG-GCC|trnM-CAU trnG-GCC-trnM-CAU 36313 36386 0 74 LSC 0.022523 2 1 72 1 no 1.000000 3 1.000000 0.013575 1.000000 52.600000 trnM-CAU tRNA trnM-CAU trnM-CAU 36387 36460 -1 74 LSC 0.018018 2 0 2 5 no 0.333333 2 0.500000 0.018018 1.000000 36.600000 IGS_034 igs trnM-CAU|rps14 trnM-CAU-rps14 36461 36588 0 128 LSC 0.026247 5 4 5 1 no 1.000000 3 1.000000 0.026564 0.992188 57.700000 rps14 gene rps14 rps14 36589 36909 -1 321 LSC 0.012500 6 2 91 24 no 1.000000 3 1.000000 0.012533 0.996885 48.300000 IGS_035 igs rps14|psaB rps14-psaB 36910 37031 0 122 LSC 0.016393 3 0 6 186 no 0.333333 2 0.500000 0.016393 1.000000 35.900000 psaB gene psaB psaB 37032 39236 -1 2205 LSC 0.024943 82 0 6 50 no 1.000000 3 1.000000 0.024943 1.000000 58.600000 IGS_036 igs psaB|psaA psaB-psaA 39237 39266 0 30 LSC 0.000000 0 0 9 20 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 psaA gene psaA psaA 39267 41516 -1 2250 LSC 0.046115 155 2 39 57 no 1.000000 3 1.000000 0.046115 0.999111 74.600000 IGS_037 igs psaA|ycf3 psaA-ycf3 41517 42343 0 827 LSC 0.023378 29 11 56 150 no 1.000000 3 1.000000 0.023636 1.000000 64.400000 ycf3 gene ycf3 ycf3 42344 44378 -1 2035 LSC 0.016124 49 20 8 120 no 1.000000 3 1.000000 0.016201 0.995577 54.500000 IGS_038 igs ycf3|trnS-GGA ycf3-trnS-GGA 44379 44955 0 577 LSC 0.055751 47 14 14 193 yes 1.000000 3 1.000000 0.056090 0.984402 79.400000 trnS-GGA tRNA trnS-GGA trnS-GGA 44956 45042 1 87 LSC 0.000000 0 0 68 106 no 0.000000 1 0.000000 0.000000 1.000000 23.800000 IGS_039 igs trnS-GGA|rps4 trnS-GGA-rps4 45043 45393 0 351 LSC 0.021134 11 5 155 175 no 1.000000 3 1.000000 0.021189 0.988604 65.000000 rps4 gene rps4 rps4 45394 45999 -1 606 LSC 0.013201 12 0 31 31 no 0.333333 2 0.500000 0.013201 1.000000 42.000000 IGS_040 igs rps4|trnT-UGU rps4-trnT-UGU 46000 46476 0 477 LSC 0.036723 26 23 67 76 no 1.000000 3 1.000000 0.037893 0.989518 74.800000 trnT-UGU tRNA trnT-UGU trnT-UGU 46477 46549 -1 73 LSC 0.000000 0 0 14 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_041 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 46550 47335 0 786 LSC 0.033722 39 48 87 151 yes 1.000000 3 1.000000 0.034940 0.980916 76.800000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 47336 47370 1 35 LSC 0.000000 0 0 17 116 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 47829 47878 1 50 LSC 0.000000 0 0 27 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_044 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 47879 48157 0 279 LSC 0.027883 11 18 77 97 no 1.000000 3 1.000000 0.028078 0.942652 65.000000 trnF-GAA tRNA trnF-GAA trnF-GAA 48158 48230 1 73 LSC 0.000000 0 0 8 24 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_045 igs trnF-GAA|trnV-UAC trnF-GAA-trnV-UAC 48231 48618 0 388 LSC 0.056007 30 43 81 282 yes 1.000000 3 1.000000 0.056876 0.951031 81.500000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 48619 48655 -1 37 LSC 0.000000 0 0 58 245 no 0.000000 1 0.000000 0.000000 1.000000 23.100000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 49281 49318 -1 38 LSC 0.000000 0 0 78 81 no 0.000000 1 0.000000 0.000000 1.000000 24.600000 IGS_048 igs trnV-UAC|trnM-CAU trnV-UAC-trnM-CAU 49319 49517 0 199 LSC 0.013400 4 2 116 41 no 0.333333 2 0.500000 0.013536 1.000000 37.800000 trnM-CAU tRNA trnM-CAU trnM-CAU 49518 49589 1 72 LSC 0.009259 1 0 66 7 no 0.333333 2 0.500000 0.009259 1.000000 31.400000 IGS_049 igs trnM-CAU|atpE trnM-CAU-atpE 49590 49837 0 248 LSC 0.013441 5 2 30 1 no 0.333333 2 0.500000 0.013550 1.000000 34.600000 atpE gene atpE atpE 49838 50236 -1 399 LSC 0.015038 9 0 22 41 no 0.333333 2 0.500000 0.015038 1.000000 38.300000 atpB gene atpB atpB 50233 51729 -1 1497 LSC 0.028947 65 1 143 11 no 1.000000 3 1.000000 0.028961 1.000000 63.100000 IGS_051 igs atpB|rbcL atpB-rbcL 51730 52534 0 805 LSC 0.056391 67 10 8 17 yes 1.000000 3 1.000000 0.056530 0.991304 78.500000 rbcL gene rbcL rbcL 52535 53962 1 1428 LSC 0.032913 70 0 43 36 no 1.000000 3 1.000000 0.032913 1.000000 67.400000 IGS_052 igs rbcL|accD rbcL-accD 53963 54564 0 602 LSC 0.187273 152 59 48 1 yes 1.000000 3 1.000000 0.188539 0.913621 82.100000 accD gene accD accD 54565 55926 1 1362 LSC 0.104341 205 49 1 135 yes 1.000000 3 1.000000 0.104341 0.964023 82.100000 IGS_053 igs accD|psaI accD-psaI 55927 56319 0 393 LSC 0.020566 12 9 1 121 no 1.000000 3 1.000000 0.020755 0.989822 55.000000 psaI gene psaI psaI 56320 56433 1 114 LSC 0.000000 0 1 11 7 no 0.333333 2 0.500000 0.000000 1.000000 26.500000 IGS_054 igs psaI|ycf4 psaI-ycf4 56434 56956 0 523 LSC 0.019194 15 2 125 27 no 1.000000 3 1.000000 0.019194 0.996176 56.700000 ycf4 gene ycf4 ycf4 56957 57376 1 420 LSC 0.004762 3 0 78 35 no 0.333333 2 0.500000 0.004762 1.000000 33.200000 IGS_055 igs ycf4|cemA ycf4-cemA 57377 57640 0 264 LSC 0.035354 13 4 120 90 no 1.000000 3 1.000000 0.035859 1.000000 68.100000 cemA gene cemA cemA 57641 58321 1 681 LSC 0.009790 10 0 59 28 no 0.333333 2 0.500000 0.009790 1.000000 39.600000 IGS_056 igs cemA|petA cemA-petA 58322 58516 0 195 LSC 0.023932 7 0 45 41 no 0.333333 2 0.500000 0.023932 1.000000 43.300000 petA gene petA petA 58517 59467 1 951 LSC 0.016842 24 1 13 16 no 1.000000 3 1.000000 0.016842 0.998948 55.600000 IGS_057 igs petA|psbJ petA-psbJ 59468 60112 0 645 LSC 0.017764 17 10 2 27 no 1.000000 3 1.000000 0.017845 0.989147 56.700000 psbJ gene psbJ psbJ 60113 60235 -1 123 LSC 0.005420 1 0 38 6 no 0.333333 2 0.500000 0.005420 1.000000 28.900000 IGS_058 igs psbJ|psbL psbJ-psbL 60236 60403 0 168 LSC 0.019841 5 0 95 0 no 1.000000 3 1.000000 0.019841 1.000000 50.100000 psbL gene psbL psbL 60404 60508 -1 105 LSC 0.012698 2 0 6 20 no 1.000000 3 1.000000 0.012698 1.000000 46.000000 IGS_059 igs psbL|psbF psbL-psbF 60509 60530 0 22 LSC 0.030303 1 0 101 248 no 0.333333 2 0.500000 0.030303 1.000000 51.900000 psbF gene psbF psbF 60531 60650 -1 120 LSC 0.000000 0 0 1 128 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_060 igs psbF|psbE psbF-psbE 60651 60658 0 8 LSC 0.000000 0 0 121 120 no 0.000000 1 0.000000 NA 1.000000 27.700000 psbE gene psbE psbE 60659 60910 -1 252 LSC 0.013228 5 0 129 204 no 0.333333 2 0.500000 0.013228 1.000000 43.100000 IGS_061 igs psbE|petL psbE-petL 60911 62201 0 1291 LSC 0.063416 119 56 71 60 yes 1.000000 3 1.000000 0.063885 0.969016 86.500000 petL gene petL petL 62202 62297 1 96 LSC 0.006944 1 0 39 25 no 0.333333 2 0.500000 0.006944 1.000000 31.300000 IGS_062 igs petL|petG petL-petG 62298 62503 0 206 LSC 0.016181 5 1 35 104 no 0.333333 2 0.500000 0.016260 1.000000 38.500000 petG gene petG petG 62504 62617 1 114 LSC 0.005848 1 0 20 32 no 0.333333 2 0.500000 0.005848 1.000000 30.200000 IGS_063 igs petG|trnW-CCA petG-trnW-CCA 62618 62762 0 145 LSC 0.009195 2 0 9 78 no 0.333333 2 0.500000 0.009195 1.000000 31.500000 trnW-CCA tRNA trnW-CCA trnW-CCA 62763 62836 -1 74 LSC 0.000000 0 0 111 4 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_064 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 62837 63016 0 180 LSC 0.025926 7 0 185 76 no 0.333333 2 0.500000 0.025926 1.000000 47.200000 trnP-UGG tRNA trnP-UGG trnP-UGG 63017 63090 -1 74 LSC 0.000000 0 0 65 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_065 igs trnP-UGG|psaJ trnP-UGG-psaJ 63091 63503 0 413 LSC 0.047502 29 6 139 56 yes 1.000000 3 1.000000 0.047502 0.985472 75.500000 psaJ gene psaJ psaJ 63504 63632 1 129 LSC 0.005168 1 0 1 14 no 0.333333 2 0.500000 0.005168 1.000000 28.400000 IGS_066 igs psaJ|rpl33 psaJ-rpl33 63633 64120 0 488 LSC 0.022222 16 12 72 23 no 1.000000 3 1.000000 0.022397 0.983607 59.700000 rpl33 gene rpl33 rpl33 64121 64321 1 201 LSC 0.013267 4 0 9 37 no 0.333333 2 0.500000 0.013267 1.000000 34.100000 IGS_067 igs rpl33|rps18 rpl33-rps18 64322 64954 0 633 LSC 0.054839 51 20 17 35 yes 1.000000 3 1.000000 0.055195 0.979463 80.700000 rps18 gene rps18 rps18 64955 65260 1 306 LSC 0.060284 25 24 164 17 yes 1.000000 3 1.000000 0.060284 0.921569 75.200000 IGS_068 igs rps18|rpl20 rps18-rpl20 65261 65604 0 344 LSC 0.113497 55 18 0 14 yes 1.000000 3 1.000000 0.113497 0.947674 77.900000 rpl20 gene rpl20 rpl20 65605 65958 -1 354 LSC 0.024482 13 0 8 81 no 0.333333 2 0.500000 0.024482 1.000000 42.300000 IGS_069 igs rpl20|rps12 rpl20-rps12 65959 66789 0 831 LSC 0.027027 31 17 13 127 no 1.000000 3 1.000000 0.027027 0.979543 63.400000 rps12_part1 gene rps12 rps12 66790 66903 -1 114 LSC 0.000000 0 0 3 13 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_070 igs rps12|clpP rps12-clpP 66904 67035 0 132 LSC 0.045455 9 0 117 7 no 0.333333 2 0.500000 0.045455 1.000000 54.500000 clpP gene clpP clpP 67036 68472 -1 1437 LSC 0.038506 83 0 9 66 yes 1.000000 3 1.000000 0.038506 1.000000 69.000000 IGS_071 igs clpP|psbB clpP-psbB 68473 68961 0 489 LSC 0.013274 9 41 300 35 no 1.000000 3 1.000000 0.013367 0.924335 56.000000 psbB gene psbB psbB 68962 70488 1 1527 LSC 0.010915 25 0 93 61 no 1.000000 3 1.000000 0.010915 1.000000 55.200000 IGS_072 igs psbB|psbT psbB-psbT 70489 70658 0 170 LSC 0.016162 4 6 21 300 no 1.000000 3 1.000000 0.016236 0.970588 52.700000 psbT gene psbT psbT 70659 70766 1 108 LSC 0.000000 0 0 71 300 no 0.000000 1 0.000000 0.000000 1.000000 24.100000 IGS_073 igs psbT|psbN psbT-psbN 70767 70820 0 54 LSC 0.000000 0 0 179 300 no 0.000000 1 0.000000 0.000000 1.000000 32.200000 psbN gene psbN psbN 70821 70952 -1 132 LSC 0.000000 0 0 233 252 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_074 igs psbN|psbH psbN-psbH 70953 71058 0 106 LSC 0.000000 0 2 300 146 no 0.333333 2 0.500000 0.000000 1.000000 38.100000 psbH gene psbH psbH 71059 71280 1 222 LSC 0.003003 1 0 300 92 no 0.333333 2 0.500000 0.003003 1.000000 33.800000 IGS_075 igs psbH|petB psbH-petB 71281 71458 0 178 LSC 0.007491 2 0 75 22 no 0.333333 2 0.500000 0.007491 1.000000 31.400000 petB gene petB petB 71459 72879 1 1421 LSC 0.025388 54 3 72 21 no 1.000000 3 1.000000 0.025388 0.997889 61.700000 IGS_076 igs petB|petD petB-petD 72880 73160 0 281 LSC 0.014870 6 14 6 9 no 1.000000 3 1.000000 0.014944 0.957295 52.000000 petD gene petD petD 73161 74375 1 1215 LSC 0.020556 37 18 176 13 no 1.000000 3 1.000000 0.020595 0.987654 59.200000 IGS_077 igs petD|rpoA petD-rpoA 74376 74512 0 137 LSC 0.024331 5 4 20 4 no 1.000000 3 1.000000 0.024989 1.000000 56.700000 rpoA gene rpoA rpoA 74513 75523 -1 1011 LSC 0.064168 95 24 26 1 yes 1.000000 3 1.000000 0.064168 0.976261 80.200000 IGS_078 igs rpoA|rps11 rpoA-rps11 75524 75549 0 26 LSC 0.128205 5 0 1 1 no 0.333333 2 0.500000 0.128205 1.000000 60.100000 rps11 gene rps11 rps11 75550 76017 -1 468 LSC 0.054247 38 1 0 25 no 1.000000 3 1.000000 0.054247 0.997863 73.800000 IGS_079 igs rps11|rpl36 rps11-rpl36 76018 76205 0 188 LSC 0.048689 13 10 10 9 no 1.000000 3 1.000000 0.048689 0.946809 73.200000 rpl36 gene rpl36 rpl36 76206 76319 -1 114 LSC 0.005848 1 0 36 13 no 0.333333 2 0.500000 0.005848 1.000000 29.700000 IGS_080 igs rpl36|rps8 rpl36-rps8 76320 76981 0 662 LSC 0.025386 23 62 104 30 no 1.000000 3 1.000000 0.025515 0.912387 65.000000 rps8 gene rps8 rps8 76982 77386 -1 405 LSC 0.014815 9 0 9 7 no 0.333333 2 0.500000 0.014815 1.000000 37.200000 IGS_081 igs rps8|rpl14 rps8-rpl14 77387 77591 0 205 LSC 0.019512 6 0 55 45 no 0.333333 2 0.500000 0.019512 1.000000 40.800000 rpl14 gene rpl14 rpl14 77592 77960 -1 369 LSC 0.010840 6 0 15 110 no 0.333333 2 0.500000 0.010840 1.000000 34.500000 IGS_082 igs rpl14|rpl16 rpl14-rpl16 77961 78090 0 130 LSC 0.005249 1 7 126 66 no 1.000000 3 1.000000 0.005420 0.976923 50.900000 rpl16 gene rpl16 rpl16 78091 78501 -1 411 LSC 0.009732 6 0 19 10 no 0.333333 2 0.500000 0.009732 1.000000 34.300000 IGS_083 igs rpl16|rps3 rpl16-rps3 78502 79618 0 1117 LSC 0.016544 27 34 173 33 no 1.000000 3 1.000000 0.016619 0.974038 59.600000 rps3 gene rps3 rps3 79619 80269 -1 651 LSC 0.016385 16 3 64 125 no 0.333333 2 0.500000 0.016461 1.000000 47.000000 rpl22 gene rpl22 rpl22 80254 80838 -1 585 LSC 0.006838 6 0 33 51 no 0.333333 2 0.500000 0.006838 1.000000 37.800000 IGS_085 igs rpl22|trnH-GUG rpl22-trnH-GUG 80839 81006 0 168 LSC 0.007937 2 8 35 163 no 1.000000 3 1.000000 0.008234 1.000000 50.600000 trnH-GUG tRNA trnH-GUG trnH-GUG 81007 81080 1 74 IRb 0.000000 0 0 44 89 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 IGS_086 igs trnH-GUG|rps19 trnH-GUG-rps19 81081 81142 0 62 IRb 0.000000 0 0 118 27 no 0.000000 1 0.000000 0.000000 1.000000 20.800000 rps19 gene rps19 rps19 81143 81421 -1 279 IRb 0.011947 5 0 180 117 no 0.333333 2 0.500000 0.011947 1.000000 41.400000 IGS_087 igs rps19|rpl2 rps19-rpl2 81422 81491 0 70 IRb 0.000000 0 0 1 47 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 rpl2 gene rpl2 rpl2 81492 82987 -1 1496 IRb 0.008467 19 0 71 35 no 0.333333 2 0.500000 0.008467 1.000000 39.300000 IGS_088 igs rpl2|rpl23 rpl2-rpl23 82988 83005 0 18 IRb 0.000000 0 0 300 17 no 0.000000 1 0.000000 NA 1.000000 20.000000 rpl23 gene rpl23 rpl23 83006 83290 -1 285 IRb 0.007018 3 0 300 24 no 0.333333 2 0.500000 0.007018 1.000000 31.300000 IGS_089 igs rpl23|trnI-CAU rpl23-trnI-CAU 83291 83466 0 176 IRb 0.015152 4 0 167 117 no 0.333333 2 0.500000 0.015152 1.000000 43.400000 trnI-CAU tRNA trnI-CAU trnI-CAU 83467 83540 -1 74 IRb 0.000000 0 0 24 43 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_090 igs trnI-CAU|ycf15 trnI-CAU-ycf15 83541 84094 0 554 IRb 0.025271 21 0 98 171 no 0.333333 2 0.500000 0.025271 1.000000 53.800000 ycf15 gene ycf15 ycf15 84095 84292 1 198 IRb 0.006734 2 0 144 114 no 0.333333 2 0.500000 0.006734 1.000000 37.800000 IGS_091 igs ycf15|trnL-CAA ycf15-trnL-CAA 84293 84546 0 254 IRb 0.007874 3 0 12 225 no 0.333333 2 0.500000 0.007874 1.000000 30.900000 trnL-CAA tRNA trnL-CAA trnL-CAA 84547 84627 -1 81 IRb 0.000000 0 0 46 144 no 0.000000 1 0.000000 0.000000 1.000000 22.200000 IGS_092 igs trnL-CAA|trnL-UAG trnL-CAA-trnL-UAG 84628 85789 0 1162 SSC 0.033782 56 47 127 16 no 1.000000 3 1.000000 0.033782 0.959552 69.900000 trnL-UAG tRNA trnL-UAG trnL-UAG 85790 85869 1 80 SSC 0.016667 2 0 4 7 no 0.333333 2 0.500000 0.016667 1.000000 35.900000 IGS_093 igs trnL-UAG|ccsA trnL-UAG-ccsA 85870 86043 0 174 SSC 0.011494 3 0 26 254 no 0.333333 2 0.500000 0.011494 1.000000 34.300000 ccsA gene ccsA ccsA 86044 87009 1 966 SSC 0.012422 18 0 25 52 no 0.333333 2 0.500000 0.012422 1.000000 41.000000 IGS_094 igs ccsA|psaC ccsA-psaC 87010 87392 0 383 SSC 0.017406 10 0 18 35 no 0.333333 2 0.500000 0.017406 1.000000 39.200000 psaC gene psaC psaC 87393 87638 -1 246 SSC 0.008130 3 0 43 59 no 0.333333 2 0.500000 0.008130 1.000000 33.400000 IGS_095 igs psaC|rps15 psaC-rps15 87639 89137 0 1499 SSC 0.021348 48 2 206 17 no 0.333333 2 0.500000 0.021376 1.000000 46.300000 rps15 gene rps15 rps15 89138 89413 -1 276 SSC 0.009662 4 0 100 5 no 0.333333 2 0.500000 0.009662 1.000000 31.500000 IGS_096 igs rps15|trnN-GUU rps15-trnN-GUU 89414 90460 0 1047 SSC 0.012098 19 3 58 47 no 0.333333 2 0.500000 0.012133 1.000000 42.800000 trnN-GUU tRNA trnN-GUU trnN-GUU 90461 90532 1 72 SSC 0.009259 1 0 6 1 no 0.333333 2 0.500000 0.009259 1.000000 31.000000 IGS_097 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 90533 91023 0 491 SSC 0.013578 10 0 24 16 no 0.333333 2 0.500000 0.013578 1.000000 38.800000 trnR-ACG tRNA trnR-ACG trnR-ACG 91024 91097 -1 74 SSC 0.009009 1 0 256 22 no 0.333333 2 0.500000 0.009009 1.000000 32.400000 IGS_098 igs trnR-ACG|rrn5S trnR-ACG-rrn5S 91098 91355 0 258 SSC 0.025840 10 4 57 64 no 0.333333 2 0.500000 0.026247 1.000000 47.500000 rrn5S rRNA rrn5S rrn5S 91356 91476 -1 121 SSC 0.011019 2 0 2 41 no 0.333333 2 0.500000 0.011019 1.000000 32.200000 IGS_099 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 91477 91700 0 224 SSC 0.020833 7 0 41 102 no 0.333333 2 0.500000 0.020833 1.000000 41.400000 rrn4.5S rRNA rrn4.5S rrn4.5S 91701 91802 -1 102 SSC 0.000000 0 0 12 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_100 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 91803 91901 0 99 SSC 0.006734 1 0 114 267 no 0.333333 2 0.500000 0.006734 1.000000 37.800000 rrn23S rRNA rrn23S rrn23S 91902 94709 -1 2808 SSC 0.011159 47 2 98 94 no 0.333333 2 0.500000 0.011167 1.000000 42.800000 IGS_101 igs rrn23S|trnA-UGC rrn23S-trnA-UGC 94710 94866 0 157 SSC 0.021231 5 0 223 94 no 0.333333 2 0.500000 0.021231 1.000000 45.600000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 94867 94901 -1 35 SSC 0.000000 0 0 9 59 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 95614 95651 -1 38 SSC 0.017544 1 0 17 80 no 0.333333 2 0.500000 0.017544 1.000000 37.500000 IGS_104 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 95652 95717 0 66 SSC 0.000000 0 0 25 14 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 95718 95757 -1 40 SSC 0.016667 1 0 91 31 no 0.333333 2 0.500000 0.016667 1.000000 37.900000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 96603 96634 -1 32 SSC 0.000000 0 0 39 154 no 0.000000 1 0.000000 0.000000 1.000000 21.700000 IGS_107 igs trnI-GAU|rrn16S trnI-GAU-rrn16S 96635 96945 0 311 SSC 0.008574 4 0 71 261 no 0.333333 2 0.500000 0.008574 1.000000 36.000000 rrn16S rRNA rrn16S rrn16S 96946 98438 -1 1493 SSC 0.012056 27 2 0 0 no 0.333333 2 0.500000 0.012072 1.000000 39.100000 IGS_108 igs rrn16S|trnV-GAC rrn16S-trnV-GAC 98439 98627 0 189 SSC 0.056437 16 1 13 73 no 0.333333 2 0.500000 0.056738 1.000000 59.700000 trnV-GAC tRNA trnV-GAC trnV-GAC 98628 98699 -1 72 SSC 0.000000 0 0 11 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_109 igs trnV-GAC|rps12 trnV-GAC-rps12 98700 100616 0 1917 SSC 0.013911 40 24 83 11 no 0.333333 2 0.500000 0.014087 1.000000 41.500000 rps12_part2 gene rps12 rps12 100617 100874 1 258 SSC 0.012920 5 0 25 69 no 0.333333 2 0.500000 0.012920 1.000000 35.100000 IGS_110 igs rps12|rps7 rps12-rps7 100875 100927 0 53 SSC 0.000000 0 0 108 16 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 rps7 gene rps7 rps7 100928 101395 1 468 SSC 0.035613 25 0 161 239 no 0.333333 2 0.500000 0.035613 1.000000 63.300000 IGS_111 igs rps7|rpl32 rps7-rpl32 101396 102290 0 895 SSC 0.011173 15 4 70 147 no 0.333333 2 0.500000 0.011223 1.000000 44.100000 rpl32 gene rpl32 rpl32 102291 102446 -1 156 SSC 0.004274 1 0 2 27 no 0.333333 2 0.500000 0.004274 1.000000 27.900000 IGS_112 igs rpl32|trnL-CAA rpl32-trnL-CAA 102447 103056 0 610 IRa 0.009836 9 0 8 127 no 0.333333 2 0.500000 0.009836 1.000000 38.100000 trnL-CAA tRNA trnL-CAA trnL-CAA 103057 103137 1 81 IRa 0.000000 0 0 144 46 no 0.000000 1 0.000000 0.000000 1.000000 22.200000 IGS_113 igs trnL-CAA|ycf15 trnL-CAA-ycf15 103138 103391 0 254 IRa 0.007874 3 0 225 12 no 0.333333 2 0.500000 0.007874 1.000000 30.900000 ycf15 gene ycf15 ycf15 103392 103589 -1 198 IRa 0.006734 2 0 114 144 no 0.333333 2 0.500000 0.006734 1.000000 37.800000 IGS_114 igs ycf15|trnI-CAU ycf15-trnI-CAU 103590 104143 0 554 IRa 0.025271 21 0 171 98 no 0.333333 2 0.500000 0.025271 1.000000 53.800000 trnI-CAU tRNA trnI-CAU trnI-CAU 104144 104217 1 74 IRa 0.000000 0 0 43 24 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_115 igs trnI-CAU|rpl23 trnI-CAU-rpl23 104218 104393 0 176 IRa 0.015152 4 0 117 167 no 0.333333 2 0.500000 0.015152 1.000000 43.400000 rpl23 gene rpl23 rpl23 104394 104678 1 285 IRa 0.007018 3 0 24 300 no 0.333333 2 0.500000 0.007018 1.000000 31.300000 IGS_116 igs rpl23|rpl2 rpl23-rpl2 104679 104696 0 18 IRa 0.000000 0 0 17 300 no 0.000000 1 0.000000 NA 1.000000 20.000000 rpl2 gene rpl2 rpl2 104697 106192 1 1496 IRa 0.008467 19 0 35 71 no 0.333333 2 0.500000 0.008467 1.000000 39.300000 IGS_117 igs rpl2|rps19 rpl2-rps19 106193 106262 0 70 IRa 0.000000 0 0 47 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 rps19 gene rps19 rps19 106263 106541 1 279 IRa 0.011947 5 0 117 187 no 0.333333 2 0.500000 0.011947 1.000000 41.400000 IGS_118 igs rps19|trnH-GUG rps19-trnH-GUG 106542 106603 0 62 IRa 0.000000 0 0 27 125 no 0.000000 1 0.000000 0.000000 1.000000 20.800000 trnH-GUG tRNA trnH-GUG trnH-GUG 106604 106677 -1 74 IRa 0.000000 0 0 89 51 no 0.000000 1 0.000000 0.000000 1.000000 22.600000 IGS_119 igs trnH-GUG|psbA trnH-GUG-psbA 106678 112 0 155 LSC 0.025806 6 0 163 246 no 1.000000 3 1.000000 0.025806 1.000000 66.200000