feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH-GUG tRNA trnH-GUG trnH-GUG 11 84 -1 74 LSC 0.000000 0 0 8 43 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_001 igs trnH-GUG|psbA trnH-GUG-psbA 85 361 0 277 LSC 0.012319 8 1 82 35 no 0.200000 3 0.333333 0.012319 0.996390 34.600000 psbA gene psbA psbA 362 1423 -1 1062 LSC 0.002260 6 0 25 61 no 0.400000 3 0.666667 0.002260 1.000000 36.100000 IGS_002 igs psbA|trnK-UUU psbA-trnK-UUU 1424 1654 0 231 LSC 0.009524 5 0 242 298 no 0.600000 4 0.750000 0.009524 1.000000 52.000000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 1655 1689 -1 35 LSC 0.000000 0 0 10 263 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 matK gene matK matK 1971 3479 -1 1509 LSC 0.005964 22 0 17 35 no 1.000000 5 1.000000 0.005964 1.000000 49.500000 IGS_005 igs matK|trnK-UUU matK-trnK-UUU 3480 4196 0 717 LSC 0.009484 17 0 119 38 no 0.400000 3 0.666667 0.009484 1.000000 42.600000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 4197 4233 -1 37 LSC 0.000000 0 0 134 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_006 igs trnK-UUU|trnQ-UUG trnK-UUU-trnQ-UUG 4234 7062 0 2829 LSC 0.012344 72 422 171 143 yes 1.000000 5 1.000000 0.012141 0.868505 61.600000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 7063 7134 -1 72 LSC 0.000000 0 0 68 71 no 0.000000 1 0.000000 0.000000 1.000000 23.800000 IGS_007 igs trnQ-UUG|psbK trnQ-UUG-psbK 7135 7470 0 336 LSC 0.005357 4 0 140 104 no 0.600000 4 0.750000 0.005357 1.000000 42.400000 psbK gene psbK psbK 7471 7656 1 186 LSC 0.004301 2 0 138 31 no 0.400000 3 0.666667 0.004301 1.000000 31.900000 IGS_008 igs psbK|psbI psbK-psbI 7657 8066 0 410 LSC 0.006829 7 0 15 111 no 0.600000 4 0.750000 0.006829 1.000000 38.600000 psbI gene psbI psbI 8067 8177 1 111 LSC 0.000000 0 0 113 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_009 igs psbI|trnS-GCU psbI-trnS-GCU 8178 8314 0 137 LSC 0.011679 4 0 224 93 no 0.600000 4 0.750000 0.011679 1.000000 45.900000 trnS-GCU tRNA trnS-GCU trnS-GCU 8315 8402 -1 88 LSC 0.000000 0 0 55 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_010 igs trnS-GCU|trnS-CGA trnS-GCU-trnS-CGA 8403 9306 0 904 LSC 0.012768 27 33 143 263 yes 1.000000 5 1.000000 0.012647 0.972345 67.500000 trnS-CGA_part1 tRNA trnS-CGA trnS-CGA 9307 9337 1 31 LSC 0.000000 0 0 108 232 no 0.000000 1 0.000000 0.000000 1.000000 26.900000 trnS-CGA_part2 tRNA trnS-CGA trnS-CGA 10009 10068 1 60 LSC 0.000000 0 0 159 30 no 0.000000 1 0.000000 0.000000 1.000000 21.000000 IGS_013 igs trnS-CGA|trnR-UCU trnS-CGA-trnR-UCU 10069 10203 0 135 LSC 0.016296 4 0 219 163 no 0.200000 3 0.333333 0.016296 1.000000 45.800000 trnR-UCU tRNA trnR-UCU trnR-UCU 10204 10275 1 72 LSC 0.000000 0 0 32 91 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_014 igs trnR-UCU|atpA trnR-UCU-atpA 10276 10406 0 131 LSC 0.003053 1 0 104 300 no 0.200000 2 0.500000 0.003053 1.000000 32.600000 atpA gene atpA atpA 10407 11930 -1 1524 LSC 0.003281 12 0 39 29 no 1.000000 5 1.000000 0.003281 1.000000 48.300000 IGS_015 igs atpA|atpF atpA-atpF 11931 11984 0 54 LSC 0.014815 2 0 192 48 no 0.200000 2 0.500000 0.014815 1.000000 37.400000 atpF gene atpF atpF 11985 13245 -1 1261 LSC 0.003968 12 1 5 93 no 0.200000 3 0.333333 0.003968 0.999207 32.200000 IGS_016 igs atpF|atpH atpF-atpH 13246 13687 0 442 LSC 0.001810 2 0 91 300 no 0.400000 3 0.666667 0.001810 1.000000 37.400000 atpH gene atpH atpH 13688 13933 -1 246 LSC 0.000000 0 0 265 144 no 0.000000 1 0.000000 0.000000 1.000000 29.500000 IGS_017 igs atpH|atpI atpH-atpI 13934 14568 0 635 LSC 0.004094 6 0 300 195 no 0.600000 4 0.750000 0.004094 1.000000 53.900000 atpI gene atpI atpI 14569 15312 -1 744 LSC 0.002151 4 0 113 78 no 0.600000 4 0.750000 0.002151 1.000000 43.700000 IGS_018 igs atpI|rps2 atpI-rps2 15313 15589 0 277 LSC 0.006498 4 0 113 69 no 0.600000 4 0.750000 0.006498 1.000000 39.900000 rps2 gene rps2 rps2 15590 16300 -1 711 LSC 0.002813 5 0 65 89 no 0.200000 2 0.500000 0.002813 1.000000 35.800000 IGS_019 igs rps2|rpoC2 rps2-rpoC2 16301 16567 0 267 LSC 0.007692 5 8 35 99 no 1.000000 5 1.000000 0.007700 0.973783 48.700000 rpoC2 gene rpoC2 rpoC2 16568 20689 -1 4122 LSC 0.003833 39 0 18 35 no 1.000000 5 1.000000 0.003833 1.000000 43.100000 IGS_020 igs rpoC2|rpoC1 rpoC2-rpoC1 20690 20842 0 153 LSC 0.007843 3 0 104 144 no 0.200000 2 0.500000 0.007843 1.000000 36.300000 rpoC1 gene rpoC1 rpoC1 20843 23670 -1 2828 LSC 0.002546 18 4 1 103 no 0.600000 4 0.750000 0.002547 1.000000 35.700000 IGS_021 igs rpoC1|rpoB rpoC1-rpoB 23671 23696 0 26 LSC 0.000000 0 0 300 77 no 0.000000 1 0.000000 0.000000 1.000000 24.500000 rpoB gene rpoB rpoB 23697 26909 -1 3213 LSC 0.002739 22 0 300 168 no 1.000000 5 1.000000 0.002739 1.000000 55.000000 IGS_022 igs rpoB|trnC-GCA rpoB-trnC-GCA 26910 28141 0 1232 LSC 0.008681 26 11 300 88 yes 1.000000 5 1.000000 0.008681 0.991071 57.700000 trnC-GCA tRNA trnC-GCA trnC-GCA 28142 28213 1 72 LSC 0.000000 0 0 65 16 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_023 igs trnC-GCA|petN trnC-GCA-petN 28214 28765 0 552 LSC 0.010909 15 2 137 114 yes 1.000000 5 1.000000 0.010909 0.996377 59.900000 petN gene petN petN 28766 28855 1 90 LSC 0.000000 0 0 0 24 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_024 igs petN|psbM petN-psbM 28856 29635 0 780 LSC 0.005128 10 69 90 96 yes 1.000000 5 1.000000 0.005256 1.000000 60.100000 psbM gene psbM psbM 29636 29740 -1 105 LSC 0.003810 1 0 72 236 no 0.200000 2 0.500000 0.003810 1.000000 30.800000 IGS_025 igs psbM|trnD-GUC psbM-trnD-GUC 29741 30664 0 924 LSC 0.011996 27 7 8 89 yes 1.000000 5 1.000000 0.011996 0.992424 54.100000 trnD-GUC tRNA trnD-GUC trnD-GUC 30665 30738 -1 74 LSC 0.000000 0 0 40 15 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_026 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 30739 31159 0 421 LSC 0.016152 16 0 114 68 yes 1.000000 5 1.000000 0.016152 1.000000 57.100000 trnY-GUA tRNA trnY-GUA trnY-GUA 31160 31243 -1 84 LSC 0.004762 1 0 114 32 no 0.200000 2 0.500000 0.004762 1.000000 28.500000 IGS_027 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 31244 31313 0 70 LSC 0.011429 2 0 15 143 no 0.400000 3 0.666667 0.011429 1.000000 36.100000 trnE-UUC tRNA trnE-UUC trnE-UUC 31314 31386 -1 73 LSC 0.000000 0 0 8 70 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_028 igs trnE-UUC|trnT-GGU trnE-UUC-trnT-GGU 31387 32584 0 1198 LSC 0.010039 25 173 81 66 no 1.000000 5 1.000000 0.010044 0.856427 56.700000 trnT-GGU tRNA trnT-GGU trnT-GGU 32585 32656 1 72 LSC 0.005556 1 0 74 48 no 0.200000 2 0.500000 0.005556 1.000000 30.300000 IGS_029 igs trnT-GGU|psbD trnT-GGU-psbD 32657 33754 0 1098 LSC 0.007847 21 8 5 300 no 1.000000 5 1.000000 0.007861 0.998179 50.900000 psbD gene psbD psbD 33755 34816 1 1062 LSC 0.002260 6 0 179 222 no 0.200000 2 0.500000 0.002260 1.000000 43.900000 psbC gene psbC psbC 34764 36185 1 1422 LSC 0.002110 7 0 300 15 no 1.000000 5 1.000000 0.002110 1.000000 46.400000 IGS_031 igs psbC|trnS-UGA psbC-trnS-UGA 36186 36407 0 222 LSC 0.013514 7 0 66 39 no 0.600000 4 0.750000 0.013514 1.000000 42.900000 trnS-UGA tRNA trnS-UGA trnS-UGA 36408 36500 -1 93 LSC 0.006452 1 0 36 12 no 0.000000 2 0.000000 0.006452 1.000000 23.900000 IGS_032 igs trnS-UGA|psbZ trnS-UGA-psbZ 36501 36835 0 335 LSC 0.005970 5 0 53 146 no 0.400000 3 0.666667 0.005970 1.000000 35.500000 psbZ gene psbZ psbZ 36836 37024 1 189 LSC 0.004233 2 0 110 14 no 0.200000 2 0.500000 0.004233 1.000000 26.800000 IGS_033 igs psbZ|trnG-GCC psbZ-trnG-GCC 37025 37348 0 324 LSC 0.008833 6 7 30 109 no 1.000000 5 1.000000 0.008833 0.978395 48.400000 trnG-GCC tRNA trnG-GCC trnG-GCC 37349 37419 1 71 LSC 0.000000 0 0 77 38 no 0.000000 1 0.000000 0.000000 1.000000 21.600000 IGS_034 igs trnG-GCC|trnfM-CAU trnG-GCC-trnfM-CAU 37420 37600 0 181 LSC 0.006667 3 2 148 300 no 0.400000 3 0.666667 0.006695 0.988950 43.400000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 37601 37674 -1 74 LSC 0.000000 0 0 80 231 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 IGS_035 igs trnfM-CAU|rps14 trnfM-CAU-rps14 37675 37822 0 148 LSC 0.000000 0 0 154 83 no 0.000000 1 0.000000 0.000000 1.000000 25.000000 rps14 gene rps14 rps14 37823 38125 -1 303 LSC 0.003960 3 0 300 25 no 0.200000 2 0.500000 0.003960 1.000000 27.500000 IGS_036 igs rps14|psaB rps14-psaB 38126 38244 0 119 LSC 0.010084 3 0 39 300 no 0.400000 3 0.666667 0.010084 1.000000 36.900000 psaB gene psaB psaB 38245 40449 -1 2205 LSC 0.001814 10 0 6 300 no 0.600000 4 0.750000 0.001814 1.000000 36.600000 IGS_037 igs psaB|psaA psaB-psaA 40450 40474 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaA gene psaA psaA 40475 42727 -1 2253 LSC 0.001509 8 0 300 87 no 0.600000 4 0.750000 0.001509 1.000000 42.300000 IGS_038 igs psaA|ycf3 psaA-ycf3 42728 43565 0 838 LSC 0.005379 11 22 128 126 yes 1.000000 5 1.000000 0.005383 0.976134 59.600000 ycf3 gene ycf3 ycf3 43566 45636 -1 2071 LSC 0.002897 15 13 21 6 no 1.000000 5 1.000000 0.002902 1.000000 46.000000 IGS_039 igs ycf3|trnS-GGA ycf3-trnS-GGA 45637 46335 0 699 LSC 0.004578 8 0 160 38 no 0.400000 3 0.666667 0.004578 1.000000 38.800000 trnS-GGA tRNA trnS-GGA trnS-GGA 46336 46422 1 87 LSC 0.004598 1 0 19 33 no 0.200000 2 0.500000 0.004598 1.000000 27.400000 IGS_040 igs trnS-GGA|rps4 trnS-GGA-rps4 46423 46693 0 271 LSC 0.006888 4 4 48 174 no 0.600000 4 0.750000 0.005195 1.000000 40.200000 rps4 gene rps4 rps4 46694 47299 -1 606 LSC 0.000660 1 0 155 23 no 0.200000 2 0.500000 0.000660 1.000000 31.000000 IGS_041 igs rps4|trnT-UGU rps4-trnT-UGU 47300 47879 0 580 LSC 0.008621 12 8 300 106 yes 1.000000 5 1.000000 0.008652 1.000000 59.400000 trnT-UGU tRNA trnT-UGU trnT-UGU 47880 47952 -1 73 LSC 0.000000 0 0 58 33 no 0.000000 1 0.000000 0.000000 1.000000 21.200000 IGS_042 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 47953 48941 0 989 LSC 0.010942 26 3 131 300 yes 1.000000 5 1.000000 0.010948 0.997978 62.100000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 48942 48976 1 35 LSC 0.000000 0 0 57 281 no 0.000000 1 0.000000 0.000000 1.000000 23.000000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 49465 49514 1 50 LSC 0.000000 0 0 131 6 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_045 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 49515 49894 0 380 LSC 0.007388 7 11 181 102 no 0.600000 4 0.750000 0.007438 0.997368 48.300000 trnF-GAA tRNA trnF-GAA trnF-GAA 49895 49967 1 73 LSC 0.000000 0 0 103 29 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_046 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 49968 50684 0 717 LSC 0.018994 34 1 176 15 yes 1.000000 5 1.000000 0.018994 0.998605 59.500000 ndhJ gene ndhJ ndhJ 50685 51161 -1 477 LSC 0.002516 3 0 67 83 no 0.200000 2 0.500000 0.002516 1.000000 33.100000 IGS_047 igs ndhJ|ndhK ndhJ-ndhK 51162 51282 0 121 LSC 0.003571 1 9 10 66 no 0.200000 2 0.500000 0.003571 0.925620 29.400000 ndhK gene ndhK ndhK 51283 52122 -1 840 LSC 0.001429 3 0 37 92 no 0.400000 3 0.666667 0.001429 1.000000 36.400000 ndhC gene ndhC ndhC 52002 52364 -1 363 LSC 0.001102 1 0 214 82 no 0.200000 2 0.500000 0.001102 1.000000 30.800000 IGS_049 igs ndhC|trnM-CAU ndhC-trnM-CAU 52365 53811 0 1447 LSC 0.009399 32 1 149 89 yes 1.000000 5 1.000000 0.009404 0.999309 57.500000 trnM-CAU tRNA trnM-CAU trnM-CAU 53812 53883 1 72 LSC 0.000000 0 0 28 17 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_050 igs trnM-CAU|atpE trnM-CAU-atpE 53884 54164 0 281 LSC 0.011429 8 2 100 113 no 0.400000 3 0.666667 0.011459 0.992883 43.100000 atpE gene atpE atpE 54165 54566 -1 402 LSC 0.000995 1 0 61 83 no 0.200000 2 0.500000 0.000995 1.000000 30.000000 atpB gene atpB atpB 54563 56059 -1 1497 LSC 0.001870 7 0 284 300 no 0.400000 3 0.666667 0.001870 1.000000 48.900000 IGS_052 igs atpB|rbcL atpB-rbcL 56060 56836 0 777 LSC 0.005148 10 0 4 86 no 0.600000 4 0.750000 0.005148 1.000000 40.500000 rbcL gene rbcL rbcL 56837 58264 1 1428 LSC 0.004062 14 0 60 9 no 0.600000 4 0.750000 0.004062 1.000000 40.000000 IGS_053 igs rbcL|psaI rbcL-psaI 58265 60557 0 2293 LSC 0.006018 34 0 62 156 no 1.000000 5 1.000000 0.006018 1.000000 51.300000 psaI gene psaI psaI 60558 60668 1 111 LSC 0.000000 0 0 34 45 no 0.000000 1 0.000000 0.000000 1.000000 21.300000 IGS_054 igs psaI|ycf4 psaI-ycf4 60669 61093 0 425 LSC 0.012235 12 0 145 194 no 0.400000 3 0.666667 0.012235 1.000000 48.800000 ycf4 gene ycf4 ycf4 61094 61648 1 555 LSC 0.004324 6 0 35 3 no 0.600000 4 0.750000 0.004324 1.000000 38.800000 IGS_055 igs ycf4|cemA ycf4-cemA 61649 62160 0 512 LSC 0.018898 23 4 21 194 yes 1.000000 5 1.000000 0.018898 0.992188 58.300000 cemA gene cemA cemA 62161 62850 1 690 LSC 0.004058 7 0 68 10 no 0.600000 4 0.750000 0.004058 1.000000 40.100000 IGS_056 igs cemA|petA cemA-petA 62851 63154 0 304 LSC 0.004682 3 5 60 26 no 0.200000 3 0.333333 0.004682 0.983553 29.300000 petA gene petA petA 63155 64051 1 897 LSC 0.003344 7 0 98 69 no 0.600000 4 0.750000 0.003344 1.000000 43.900000 IGS_057 igs petA|psbJ petA-psbJ 64052 64989 0 938 LSC 0.010128 23 3 294 50 no 0.600000 4 0.750000 0.010143 0.998934 48.000000 psbJ gene psbJ psbJ 64990 65112 -1 123 LSC 0.003252 1 0 65 35 no 0.200000 2 0.500000 0.003252 1.000000 27.600000 IGS_058 igs psbJ|psbF psbJ-psbF 65113 65392 0 280 LSC 0.003929 2 0 72 300 no 0.400000 3 0.666667 0.003929 1.000000 34.300000 psbF gene psbF psbF 65393 65512 -1 120 LSC 0.000000 0 0 125 300 no 0.000000 1 0.000000 0.000000 1.000000 28.100000 IGS_059 igs psbF|psbE psbF-psbE 65513 65525 0 13 LSC 0.000000 0 0 245 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psbE gene psbE psbE 65526 65777 -1 252 LSC 0.000000 0 0 258 68 no 0.000000 1 0.000000 0.000000 1.000000 23.800000 IGS_060 igs psbE|petL psbE-petL 65778 66501 0 724 LSC 0.009972 18 2 300 4 no 0.600000 4 0.750000 0.009972 0.997238 44.400000 petL gene petL petL 66502 66597 1 96 LSC 0.010417 2 0 19 15 no 0.200000 3 0.333333 0.010417 1.000000 30.900000 IGS_061 igs petL|petG petL-petG 66598 66792 0 195 LSC 0.010256 5 0 86 141 no 0.200000 2 0.500000 0.010256 1.000000 36.800000 petG gene petG petG 66793 66906 1 114 LSC 0.000000 0 0 16 27 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_062 igs petG|trnW-CCA petG-trnW-CCA 66907 67035 0 129 LSC 0.021667 6 9 130 97 yes 1.000000 5 1.000000 0.021667 0.930233 64.000000 trnW-CCA tRNA trnW-CCA trnW-CCA 67036 67109 -1 74 LSC 0.000000 0 0 5 23 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_063 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 67110 67277 0 168 LSC 0.007143 3 0 79 97 no 0.600000 4 0.750000 0.007143 1.000000 41.400000 trnP-UGG tRNA trnP-UGG trnP-UGG 67278 67351 -1 74 LSC 0.000000 0 0 116 23 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 IGS_064 igs trnP-UGG|psaJ trnP-UGG-psaJ 67352 67748 0 397 LSC 0.008060 8 0 190 225 no 0.400000 3 0.666667 0.008060 1.000000 48.700000 psaJ gene psaJ psaJ 67749 67883 1 135 LSC 0.000000 0 0 226 90 no 0.000000 1 0.000000 0.000000 1.000000 25.500000 IGS_065 igs psaJ|rpl33 psaJ-rpl33 67884 68261 0 378 LSC 0.009524 9 12 300 56 no 0.600000 4 0.750000 0.009628 1.000000 46.900000 rpl33 gene rpl33 rpl33 68262 68462 1 201 LSC 0.003980 2 0 182 12 no 0.200000 2 0.500000 0.003980 1.000000 26.400000 IGS_066 igs rpl33|rps18 rpl33-rps18 68463 68980 0 518 LSC 0.008494 11 2 9 78 no 1.000000 5 1.000000 0.008511 0.998069 49.600000 rps18 gene rps18 rps18 68981 69286 1 306 LSC 0.005229 4 0 59 14 no 0.400000 3 0.666667 0.005229 1.000000 31.400000 IGS_067 igs rps18|rpl20 rps18-rpl20 69287 69523 0 237 LSC 0.012931 7 5 24 147 no 0.600000 4 0.750000 0.012931 0.978903 43.200000 rpl20 gene rpl20 rpl20 69524 69910 -1 387 LSC 0.002067 2 0 80 41 no 0.400000 3 0.666667 0.002067 1.000000 32.700000 IGS_068 igs rpl20|rps12 rpl20-rps12 69911 70644 0 734 LSC 0.001635 3 0 217 248 no 0.200000 2 0.500000 0.001635 1.000000 45.000000 rps12_part1 gene rps12 rps12 70645 70758 -1 114 LSC 0.000000 0 0 300 134 no 0.000000 1 0.000000 0.000000 1.000000 28.800000 IGS_069 igs rps12|clpP rps12-clpP 70759 70912 0 154 LSC 0.002597 1 0 300 265 no 0.200000 2 0.500000 0.002597 1.000000 39.500000 clpP gene clpP clpP 70913 72941 -1 2029 LSC 0.005323 26 1 19 34 no 1.000000 5 1.000000 0.005325 0.999507 48.100000 IGS_070 igs clpP|psbB clpP-psbB 72942 73392 0 451 LSC 0.007982 9 0 300 300 no 0.400000 3 0.666667 0.007982 1.000000 50.500000 psbB gene psbB psbB 73393 74919 1 1527 LSC 0.002096 8 0 99 53 no 0.400000 3 0.666667 0.002096 1.000000 38.000000 IGS_071 igs psbB|psbT psbB-psbT 74920 75084 0 165 LSC 0.007317 3 1 210 119 no 0.200000 2 0.500000 0.007317 0.993939 37.500000 psbT gene psbT psbT 75085 75192 1 108 LSC 0.000000 0 0 106 11 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_072 igs psbT|psbN psbT-psbN 75193 75257 0 65 LSC 0.018462 3 0 214 136 no 0.400000 3 0.666667 0.018462 1.000000 50.500000 psbN gene psbN psbN 75258 75389 -1 132 LSC 0.000000 0 0 21 4 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_073 igs psbN|psbH psbN-psbH 75390 75494 0 105 LSC 0.007619 2 0 153 268 no 0.200000 2 0.500000 0.007619 1.000000 39.800000 psbH gene psbH psbH 75495 75716 1 222 LSC 0.000000 0 0 15 46 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_074 igs psbH|rps11 psbH-rps11 75717 79918 0 4202 LSC 0.004408 44 6 237 126 no 1.000000 5 1.000000 0.004408 0.998810 51.600000 rps11 gene rps11 rps11 79919 80335 -1 417 LSC 0.003837 4 0 300 85 no 0.400000 3 0.666667 0.003837 1.000000 38.000000 IGS_075 igs rps11|rpl36 rps11-rpl36 80336 80459 0 124 LSC 0.012903 4 0 61 132 no 0.600000 4 0.750000 0.012903 1.000000 44.400000 rpl36 gene rpl36 rpl36 80460 80573 -1 114 LSC 0.000000 0 0 22 18 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 IGS_076 igs rpl36|infA rpl36-infA 80574 80681 0 108 LSC 0.007407 2 0 136 90 no 0.200000 2 0.500000 0.007407 1.000000 34.900000 infA gene infA infA 80682 80915 -1 234 LSC 0.001709 1 0 35 45 no 0.200000 2 0.500000 0.001709 1.000000 26.400000 IGS_077 igs infA|rps8 infA-rps8 80916 81039 0 124 LSC 0.012903 4 0 143 185 no 0.400000 3 0.666667 0.012903 1.000000 46.800000 rps8 gene rps8 rps8 81040 81444 -1 405 LSC 0.003457 3 0 6 182 no 0.600000 4 0.750000 0.003457 1.000000 35.100000 IGS_078 igs rps8|rpl14 rps8-rpl14 81445 81633 0 189 LSC 0.002116 1 0 164 78 no 0.200000 2 0.500000 0.002116 1.000000 30.000000 rpl14 gene rpl14 rpl14 81634 82002 -1 369 LSC 0.002168 2 0 6 65 no 0.400000 3 0.666667 0.002168 1.000000 29.800000 IGS_079 igs rpl14|rpl16 rpl14-rpl16 82003 82127 0 125 LSC 0.010256 3 8 287 50 no 0.600000 4 0.750000 0.010256 0.936000 45.200000 rpl16 gene rpl16 rpl16 82128 82538 -1 411 LSC 0.001946 2 0 31 9 no 0.200000 2 0.500000 0.001946 1.000000 27.000000 IGS_080 igs rpl16|rps3 rpl16-rps3 82539 83798 0 1260 LSC 0.008810 27 0 300 99 yes 1.000000 5 1.000000 0.008810 1.000000 57.800000 rps3 gene rps3 rps3 83799 84455 -1 657 LSC 0.004566 7 0 2 55 no 0.600000 4 0.750000 0.004566 1.000000 39.800000 IGS_081 igs rps3|rpl2 rps3-rpl2 84456 85322 0 867 LSC 0.008766 18 0 89 53 no 1.000000 5 1.000000 0.008766 1.000000 54.300000 rpl2 gene rpl2 rpl2 85323 86832 -1 1510 IRb 0.001332 5 8 300 150 no 0.200000 2 0.500000 0.001332 0.994702 41.500000 IGS_082 igs rpl2|rpl23 rpl2-rpl23 86833 86850 0 18 IRb 0.000000 0 0 206 132 no 0.000000 1 0.000000 NA 1.000000 28.600000 rpl23 gene rpl23 rpl23 86851 87132 -1 282 IRb 0.001418 1 0 224 4 no 0.200000 2 0.500000 0.001418 1.000000 23.900000 IGS_083 igs rpl23|trnI-CAU rpl23-trnI-CAU 87133 87297 0 165 IRb 0.004848 2 0 149 112 no 0.200000 2 0.500000 0.004848 1.000000 34.600000 trnI-CAU tRNA trnI-CAU trnI-CAU 87298 87371 -1 74 IRb 0.000000 0 0 11 38 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_084 igs trnI-CAU|ycf2 trnI-CAU-ycf2 87372 87459 0 88 IRb 0.004545 1 0 85 172 no 0.200000 2 0.500000 0.004545 1.000000 32.300000 ycf2 gene ycf2 ycf2 87460 94317 1 6858 IRb 0.001225 21 0 49 231 no 1.000000 5 1.000000 0.001225 1.000000 42.100000 IGS_085 igs ycf2|trnL-CAA ycf2-trnL-CAA 94318 95212 0 895 IRb 0.003575 6 0 234 262 no 0.200000 3 0.333333 0.003575 1.000000 46.200000 trnL-CAA tRNA trnL-CAA trnL-CAA 95213 95293 -1 81 IRb 0.000000 0 0 61 181 no 0.000000 1 0.000000 0.000000 1.000000 23.300000 IGS_086 igs trnL-CAA|ndhB trnL-CAA-ndhB 95294 95867 0 574 IRb 0.002091 3 0 142 300 no 0.400000 3 0.666667 0.002091 1.000000 44.200000 ndhB gene ndhB ndhB 95868 98079 -1 2212 IRb 0.000904 5 0 224 300 no 0.400000 3 0.666667 0.000904 1.000000 46.700000 IGS_087 igs ndhB|rps7 ndhB-rps7 98080 98402 0 323 IRb 0.000000 0 0 140 300 no 0.000000 1 0.000000 0.000000 1.000000 29.700000 rps7 gene rps7 rps7 98403 98870 -1 468 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_088 igs rps7|rps12 rps7-rps12 98871 98923 0 53 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps12_part2 gene rps12 rps12 98924 99719 -1 796 IRb 0.000503 1 0 300 300 no 0.200000 2 0.500000 0.000503 1.000000 44.100000 IGS_089 igs rps12|trnV-GAC rps12-trnV-GAC 99720 101548 0 1829 IRb 0.001317 6 13 137 90 no 0.600000 4 0.750000 0.001319 0.996720 44.100000 trnV-GAC tRNA trnV-GAC trnV-GAC 101549 101620 1 72 IRb 0.000000 0 0 226 18 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 IGS_090 igs trnV-GAC|rrn16S trnV-GAC-rrn16S 101621 101847 0 227 IRb 0.001762 1 0 298 300 no 0.200000 2 0.500000 0.001762 1.000000 38.800000 rrn16S rRNA rrn16S rrn16S 101848 103338 1 1491 IRb 0.000000 0 0 208 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_091 igs rrn16S|trnI-GAU rrn16S-trnI-GAU 103339 103625 0 287 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 103626 103657 1 32 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 104604 104643 1 40 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_094 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 104644 104707 0 64 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 104708 104744 1 37 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 105555 105590 1 36 IRb 0.000000 0 0 29 300 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_097 igs trnA-UGC|rrn23S trnA-UGC-rrn23S 105591 105760 0 170 IRb 0.000000 0 0 65 300 no 0.000000 1 0.000000 0.000000 1.000000 23.600000 rrn23S rRNA rrn23S rrn23S 105761 108571 1 2811 IRb 0.000000 0 0 235 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_098 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 108572 108670 0 99 IRb 0.000000 0 0 300 297 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 108671 108773 1 103 IRb 0.000000 0 0 300 194 no 0.000000 1 0.000000 0.000000 1.000000 33.300000 IGS_099 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 108774 108997 0 224 IRb 0.001786 1 0 300 300 no 0.200000 2 0.500000 0.001786 1.000000 38.900000 rrn5S rRNA rrn5S rrn5S 108998 109128 1 131 IRb 0.000000 0 0 29 300 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_100 igs rrn5S|trnR-ACG rrn5S-trnR-ACG 109129 109364 0 236 IRb 0.000000 0 0 160 218 no 0.000000 1 0.000000 0.000000 1.000000 30.800000 trnR-ACG tRNA trnR-ACG trnR-ACG 109365 109438 1 74 IRb 0.000000 0 0 300 144 no 0.000000 1 0.000000 0.000000 1.000000 29.500000 IGS_101 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 109439 110024 0 586 IRb 0.001365 2 0 300 100 no 0.400000 3 0.666667 0.001365 1.000000 40.700000 trnN-GUU tRNA trnN-GUU trnN-GUU 110025 110096 -1 72 IRb 0.000000 0 0 300 28 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_102 igs trnN-GUU|ycf1 trnN-GUU-ycf1 110097 110477 0 381 IRb 0.003150 3 1 300 31 no 1.000000 5 1.000000 0.003152 1.000000 44.200000 ycf1 gene ycf1 ycf1 110478 116003 1 5526 SSC 0.010423 139 0 244 22 yes 1.000000 5 1.000000 0.010423 1.000000 47.000000 IGS_103 igs ycf1|rps15 ycf1-rps15 116004 116280 0 277 SSC 0.019048 13 4 102 3 no 0.400000 3 0.666667 0.019048 0.985560 42.200000 rps15 gene rps15 rps15 116281 116553 1 273 SSC 0.007326 4 0 14 267 no 0.600000 4 0.750000 0.007326 1.000000 36.200000 IGS_104 igs rps15|ndhH rps15-ndhH 116554 116656 0 103 SSC 0.000000 0 0 58 164 no 0.000000 1 0.000000 0.000000 1.000000 23.100000 ndhH gene ndhH ndhH 116657 117838 1 1182 SSC 0.002030 6 0 161 45 no 0.200000 2 0.500000 0.002030 1.000000 33.700000 IGS_105 igs ndhH|ndhA ndhH-ndhA 117839 117839 0 1 SSC 0.000000 0 0 120 44 no 0.000000 1 0.000000 NA 1.000000 22.100000 ndhA gene ndhA ndhA 117840 120046 1 2207 SSC 0.005077 27 1 121 14 no 1.000000 5 1.000000 0.005077 0.999547 47.200000 IGS_106 igs ndhA|ndhI ndhA-ndhI 120047 120144 0 98 SSC 0.008163 2 0 300 300 no 0.200000 2 0.500000 0.008163 1.000000 43.700000 ndhI gene ndhI ndhI 120145 120660 1 516 SSC 0.000775 1 0 24 70 no 0.200000 2 0.500000 0.000775 1.000000 29.400000 IGS_107 igs ndhI|ndhG ndhI-ndhG 120661 120992 0 332 SSC 0.010843 9 0 14 164 no 1.000000 5 1.000000 0.010843 1.000000 47.500000 ndhG gene ndhG ndhG 120993 121526 1 534 SSC 0.005243 7 0 57 6 no 0.200000 2 0.500000 0.005243 1.000000 31.800000 IGS_108 igs ndhG|ndhE ndhG-ndhE 121527 121665 0 139 SSC 0.014388 5 0 54 80 no 0.200000 2 0.500000 0.014388 1.000000 37.500000 ndhE gene ndhE ndhE 121666 121971 1 306 SSC 0.001307 1 0 32 93 no 0.200000 2 0.500000 0.001307 1.000000 26.000000 IGS_109 igs ndhE|psaC ndhE-psaC 121972 122182 0 211 SSC 0.003791 2 0 225 300 no 0.200000 2 0.500000 0.003791 1.000000 40.400000 psaC gene psaC psaC 122183 122428 1 246 SSC 0.000000 0 0 25 70 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_110 igs psaC|ndhD psaC-ndhD 122429 122650 0 222 SSC 0.003604 2 0 271 26 no 0.400000 3 0.666667 0.003604 1.000000 30.900000 ndhD gene ndhD ndhD 122651 124054 1 1404 SSC 0.003704 13 0 84 2 no 0.400000 3 0.666667 0.003704 1.000000 35.500000 IGS_111 igs ndhD|ccsA ndhD-ccsA 124055 124243 0 189 SSC 0.010582 5 0 78 119 no 0.200000 2 0.500000 0.010582 1.000000 36.400000 ccsA gene ccsA ccsA 124244 125209 -1 966 SSC 0.002899 7 0 2 30 no 0.400000 3 0.666667 0.002899 1.000000 34.900000 IGS_112 igs ccsA|trnL-UAG ccsA-trnL-UAG 125210 125330 0 121 SSC 0.016529 5 0 131 104 no 0.600000 4 0.750000 0.016529 1.000000 50.400000 trnL-UAG tRNA trnL-UAG trnL-UAG 125331 125410 -1 80 SSC 0.000000 0 0 11 24 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_113 igs trnL-UAG|ndhF trnL-UAG-ndhF 125411 127270 0 1860 SSC 0.016468 72 18 91 77 yes 1.000000 5 1.000000 0.016222 0.991398 61.900000 ndhF gene ndhF ndhF 127271 129502 1 2232 SSC 0.007616 41 0 56 33 no 1.000000 5 1.000000 0.007616 1.000000 50.400000 IGS_114 igs ndhF|trnN-GUU ndhF-trnN-GUU 129503 131043 0 1541 IRa 0.001298 5 1 30 300 no 1.000000 5 1.000000 0.001298 1.000000 47.000000 trnN-GUU tRNA trnN-GUU trnN-GUU 131044 131115 1 72 IRa 0.000000 0 0 28 300 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_115 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 131116 131701 0 586 IRa 0.001365 2 0 100 300 no 0.400000 3 0.666667 0.001365 1.000000 40.700000 trnR-ACG tRNA trnR-ACG trnR-ACG 131702 131775 -1 74 IRa 0.000000 0 0 144 300 no 0.000000 1 0.000000 0.000000 1.000000 29.500000 IGS_116 igs trnR-ACG|rrn5S trnR-ACG-rrn5S 131776 132011 0 236 IRa 0.000000 0 0 218 160 no 0.000000 1 0.000000 0.000000 1.000000 30.800000 rrn5S rRNA rrn5S rrn5S 132012 132142 -1 131 IRa 0.000000 0 0 300 29 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_117 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 132143 132366 0 224 IRa 0.001786 1 0 300 300 no 0.200000 2 0.500000 0.001786 1.000000 38.900000 rrn4.5S rRNA rrn4.5S rrn4.5S 132367 132469 -1 103 IRa 0.000000 0 0 194 300 no 0.000000 1 0.000000 0.000000 1.000000 33.300000 IGS_118 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 132470 132568 0 99 IRa 0.000000 0 0 297 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 132569 135379 -1 2811 IRa 0.000000 0 0 300 235 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_119 igs rrn23S|trnA-UGC rrn23S-trnA-UGC 135380 135549 0 170 IRa 0.000000 0 0 300 65 no 0.000000 1 0.000000 0.000000 1.000000 23.600000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 135550 135585 -1 36 IRa 0.000000 0 0 300 29 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 136396 136432 -1 37 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_122 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 136433 136496 0 64 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 136497 136536 -1 40 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 137483 137514 -1 32 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_125 igs trnI-GAU|rrn16S trnI-GAU-rrn16S 137515 137801 0 287 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 137802 139292 -1 1491 IRa 0.000000 0 0 300 208 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_126 igs rrn16S|trnV-GAC rrn16S-trnV-GAC 139293 139519 0 227 IRa 0.001762 1 0 300 298 no 0.200000 2 0.500000 0.001762 1.000000 38.800000 trnV-GAC tRNA trnV-GAC trnV-GAC 139520 139591 -1 72 IRa 0.000000 0 0 18 226 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 IGS_127 igs trnV-GAC|rps12 trnV-GAC-rps12 139592 141420 0 1829 IRa 0.001317 6 13 90 137 no 0.600000 4 0.750000 0.001319 0.996720 44.100000 rps12_part2 gene rps12 rps12 141421 142216 1 796 IRa 0.000503 1 0 300 300 no 0.200000 2 0.500000 0.000503 1.000000 44.100000 IGS_128 igs rps12|rps7 rps12-rps7 142217 142269 0 53 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 142270 142737 1 468 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_129 igs rps7|ndhB rps7-ndhB 142738 143060 0 323 IRa 0.000000 0 0 300 140 no 0.000000 1 0.000000 0.000000 1.000000 29.700000 ndhB gene ndhB ndhB 143061 145272 1 2212 IRa 0.000904 5 0 300 224 no 0.400000 3 0.666667 0.000904 1.000000 46.700000 IGS_130 igs ndhB|trnL-CAA ndhB-trnL-CAA 145273 145846 0 574 IRa 0.002091 3 0 300 142 no 0.400000 3 0.666667 0.002091 1.000000 44.200000 trnL-CAA tRNA trnL-CAA trnL-CAA 145847 145927 1 81 IRa 0.000000 0 0 181 61 no 0.000000 1 0.000000 0.000000 1.000000 23.300000 IGS_131 igs trnL-CAA|ycf2 trnL-CAA-ycf2 145928 146822 0 895 IRa 0.003575 6 0 262 234 no 0.200000 3 0.333333 0.003575 1.000000 46.200000 ycf2 gene ycf2 ycf2 146823 153680 -1 6858 IRa 0.001225 21 0 231 49 no 1.000000 5 1.000000 0.001225 1.000000 42.100000 IGS_132 igs ycf2|trnI-CAU ycf2-trnI-CAU 153681 153768 0 88 IRa 0.004545 1 0 172 85 no 0.200000 2 0.500000 0.004545 1.000000 32.300000 trnI-CAU tRNA trnI-CAU trnI-CAU 153769 153842 1 74 IRa 0.000000 0 0 38 11 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_133 igs trnI-CAU|rpl23 trnI-CAU-rpl23 153843 154007 0 165 IRa 0.004848 2 0 112 149 no 0.200000 2 0.500000 0.004848 1.000000 34.600000 rpl23 gene rpl23 rpl23 154008 154289 1 282 IRa 0.001418 1 0 4 224 no 0.200000 2 0.500000 0.001418 1.000000 23.900000 IGS_134 igs rpl23|rpl2 rpl23-rpl2 154290 154307 0 18 IRa 0.000000 0 0 132 206 no 0.000000 1 0.000000 NA 1.000000 28.600000 rpl2 gene rpl2 rpl2 154308 155817 1 1510 IRa 0.001332 5 8 150 251 no 0.200000 2 0.500000 0.001332 0.994702 41.500000 IGS_135 igs rpl2|trnH-GUG rpl2-trnH-GUG 155818 10 0 272 IRa 0.005882 4 7 53 117 no 0.400000 3 0.666667 0.006009 1.000000 37.800000