primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score trnK-UUU_p1 trnK-UUU 1 AGCAAGCATATTTCAATAAGCA ACTGCGTATTCCACTTCGAC 22 20 31.8 50.0 54.8 58.0 8.9 0.0 5.251599 1303 3704 2507-2507 1.000000 40.1 trnK-UUU_p2 trnK-UUU 2 AGCAAGCATATTTCAATAAGCA GCGTATTCCACTTCGACTGT 22 20 31.8 50.0 54.8 58.0 8.9 0.0 5.251599 1303 3704 2504-2504 1.000000 40.1 trnK-UUU_p3 trnK-UUU 3 AGCAAGCATATTTCAATAAGCA TGCGTATTCCACTTCGACTG 22 20 31.8 50.0 54.8 58.0 8.9 0.0 5.252970 1303 3704 2505-2505 1.000000 40.1 trnK-UUU_p4 trnK-UUU 4 AGCAAGCATATTTCAATAAGCA TTCCTGCCGTTCAATCACAA 22 20 31.8 45.0 54.8 58.0 8.9 0.0 5.269504 1303 3704 2567-2567 1.000000 40.1 trnK-UUU_p5 trnK-UUU 5 AGCAAGCATATTTCAATAAGCA ATTCCTGCCGTTCAATCACA 22 20 31.8 45.0 54.8 57.8 8.9 0.0 5.442596 1303 3704 2568-2568 1.000000 40.1 matK-trnK-UUU_p1 matK-trnK-UUU 1 TGCGTAAAGATCTTCCCGAA ACTGCGTATTCCACTTCGAC 20 20 45.0 50.0 57.0 58.0 23.3 0.0 1.050404 3058 3667 772-772 1.000000 71.8 matK-trnK-UUU_p2 matK-trnK-UUU 2 TGCGTAAAGATCTTCCCGAA GCGTATTCCACTTCGACTGT 20 20 45.0 50.0 57.0 58.0 23.3 0.0 1.050404 3058 3667 769-769 1.000000 71.8 matK-trnK-UUU_p3 matK-trnK-UUU 3 TTGCGTAAAGATCTTCCCGA ACTGCGTATTCCACTTCGAC 20 20 45.0 50.0 57.0 58.0 23.3 0.0 1.050404 3058 3667 773-773 1.000000 71.8 matK-trnK-UUU_p4 matK-trnK-UUU 4 TTGCGTAAAGATCTTCCCGA GCGTATTCCACTTCGACTGT 20 20 45.0 50.0 57.0 58.0 23.3 0.0 1.050404 3058 3667 770-770 1.000000 71.8 matK-trnK-UUU_p5 matK-trnK-UUU 5 TGCGTAAAGATCTTCCCGAA TGCGTATTCCACTTCGACTG 20 20 45.0 50.0 57.0 58.0 23.3 0.0 1.051774 3058 3667 770-770 1.000000 71.8 trnK-UUU-rps16_p1 trnK-UUU-rps16 1 AGTCGCACTTAAAAGCCGAG CGATGTGGTAGAAAGCAACG 20 20 50.0 50.0 58.6 57.2 6.4 0.0 1.358260 3705 5284 1655-1655 1.000000 69.2 trnK-UUU-rps16_p2 trnK-UUU-rps16 2 TAGTCGCACTTAAAAGCCGA CGATGTGGTAGAAAGCAACG 20 20 45.0 50.0 57.3 57.2 3.0 0.0 1.516412 3705 5284 1656-1656 1.000000 67.9 trnK-UUU-rps16_p3 trnK-UUU-rps16 3 TCGCACTTAAAAGCCGAGTA CGATGTGGTAGAAAGCAACG 20 20 45.0 50.0 57.3 57.2 3.0 0.0 1.516412 3705 5284 1653-1653 1.000000 67.9 trnK-UUU-rps16_p4 trnK-UUU-rps16 4 CGCACTTAAAAGCCGAGTAC CGATGTGGTAGAAAGCAACG 20 20 50.0 50.0 57.2 57.2 0.0 0.0 1.569921 3705 5284 1652-1652 1.000000 67.5 trnK-UUU-rps16_p5 trnK-UUU-rps16 5 AGTCGCACTTAAAAGCCGAG TGTGGTAGAAAGCAACGTGC 20 20 50.0 50.0 58.6 59.1 6.4 0.0 1.628995 3705 5284 1652-1652 1.000000 67.0 trnC-GCA-rpoB_p1 trnC-GCA-rpoB 1 AACTGGGGTTCGAGGATTTG AGCCTTGATCGATAAAACGACA 20 22 50.0 40.9 57.8 58.1 0.0 0.0 2.343321 24479 25253 899-919 1.000000 63.0 trnC-GCA-rpoB_p2 trnC-GCA-rpoB 2 AACTGGGGTTCGAGGATTTG GCCTTGATCGATAAAACGACA 20 21 50.0 42.9 57.8 56.7 0.0 0.0 2.480249 24479 25253 898-918 1.000000 61.9 trnC-GCA-rpoB_p3 trnC-GCA-rpoB 3 TGCCTTACCACTTGGCTATG AGCCTTGATCGATAAAACGACA 20 22 50.0 40.9 57.6 58.1 0.0 0.0 2.561316 24479 25253 871-891 1.000000 61.3 trnC-GCA-rpoB_p4 trnC-GCA-rpoB 4 GAACTGGGGTTCGAGGATTT AGCCTTGATCGATAAAACGACA 20 22 50.0 40.9 57.5 58.1 0.0 0.0 2.634623 24479 25253 900-920 1.000000 60.7 trnC-GCA-rpoB_p5 trnC-GCA-rpoB 5 TGCCTTACCACTTGGCTATG GCCTTGATCGATAAAACGACA 20 21 50.0 42.9 57.6 56.7 0.0 0.0 2.698244 24479 25253 870-890 1.000000 60.2 rpoC1_p1 rpoC1 1 TGCTCAGTCGAGAACTACGA GGAAGGCTCCCTTGATCTCT 20 20 50.0 55.0 58.2 58.5 0.0 0.4 0.689374 28574 31393 2986-2996 1.000000 74.8 rpoC1_p2 rpoC1 2 TGCTCAGTCGAGAACTACGA CTGGAAGGCTCCCTTGATCT 20 20 50.0 55.0 58.2 58.8 0.0 0.4 0.983943 28574 31393 2988-2998 1.000000 72.4 rpoC1_p3 rpoC1 3 TGCTCAGTCGAGAACTACGA TGGAAGGCTCCCTTGATCTC 20 20 50.0 55.0 58.2 58.8 0.0 0.4 0.987608 28574 31393 2987-2997 1.000000 72.4 rpoC1_p4 rpoC1 4 TTGCTCAGTCGAGAACTACG GGAAGGCTCCCTTGATCTCT 20 20 50.0 55.0 57.4 58.5 0.0 0.4 1.107705 28574 31393 2987-2997 1.000000 71.4 rpoC1_p5 rpoC1 5 TTGCTCAGTCGAGAACTACG CTGGAAGGCTCCCTTGATCT 20 20 50.0 55.0 57.4 58.8 0.0 0.4 1.402274 28574 31393 2989-2999 1.000000 69.0 atpA_p1 atpA 1 CGATCGAGCATAATATAAACCTGC AGCTCTTGTATCCTGTTCCA 24 20 41.7 45.0 58.0 55.9 10.3 0.0 6.174773 38975 40489 1689-1695 1.000000 40.1 atpA_p2 atpA 2 CGATCGAGCATAATATAAACCTGC AGCTCTTGTATCCTGTTCCAA 24 21 41.7 42.9 58.0 56.6 10.3 0.0 6.384495 38975 40489 1689-1695 1.000000 40.1 atpA_p3 atpA 3 CGATCGAGCATAATATAAACCTGC AGCTCTTGTATCCTGTTCCAAA 24 22 41.7 40.9 58.0 57.4 10.3 0.0 6.666479 38975 40489 1689-1695 1.000000 40.1 atpA_p4 atpA 4 CGATCGAGCATAATATAAACCTGC CCATTGTGCTTGTAAATGTTGC 24 22 41.7 40.9 58.0 57.3 10.3 0.0 6.676252 38975 40489 1724-1730 1.000000 40.1 atpA_p5 atpA 5 CGATCGAGCATAATATAAACCTGC GCTCTTGTATCCTGTTCCAAAC 24 22 41.7 45.5 58.0 57.3 10.3 0.0 6.712546 38975 40489 1688-1694 1.000000 40.1 trnF-GAA-ndhD_p1 trnF-GAA-ndhD 1 GCTAGTATGATGCACAGGGG AGGTATTGGTCTTTACCCCGA 20 21 55.0 47.6 57.8 58.2 0.0 0.0 1.339211 44961 45235 460-460 1.000000 69.5 trnF-GAA-ndhD_p2 trnF-GAA-ndhD 2 GCTAGTATGATGCACAGGGG GGTATTGGTCTTTACCCCGA 20 20 55.0 50.0 57.8 56.6 0.0 0.0 1.554543 44961 45235 459-459 1.000000 67.7 trnF-GAA-ndhD_p3 trnF-GAA-ndhD 3 GCTAGTATGATGCACAGGGG AGGTATTGGTCTTTACCCCG 20 20 55.0 50.0 57.8 56.6 0.0 0.0 1.563878 44961 45235 460-460 1.000000 67.7 trnF-GAA-ndhD_p4 trnF-GAA-ndhD 4 GCTAGTATGATGCACAGGGG TGGTCTTTACCCCGATCTAGT 20 21 55.0 47.6 57.8 57.6 0.0 0.0 1.569303 44961 45235 454-454 1.000000 67.6 trnF-GAA-ndhD_p5 trnF-GAA-ndhD 5 GTATGATGCACAGGGGAACA AGGTATTGGTCTTTACCCCGA 20 21 50.0 47.6 57.6 58.2 0.0 0.0 1.581701 44961 45235 456-456 1.000000 67.5 rrn5-rrn4.5_p1 rrn5-rrn4.5 1 GATTGGTGTGGTTCCCCTAC GCCAGCGATTAGACGATAGG 20 20 55.0 55.0 57.9 58.0 0.0 0.0 0.140305 58485 58786 423-423 1.000000 79.1 rrn5-rrn4.5_p2 rrn5-rrn4.5 2 AAGTTCGGGATGGATTGGTG GCCAGCGATTAGACGATAGG 20 20 50.0 55.0 57.9 58.0 0.0 0.0 0.144798 58485 58786 435-435 1.000000 79.0 rrn5-rrn4.5_p3 rrn5-rrn4.5 3 ACCAAGTTCGGGATGGATTG GCCAGCGATTAGACGATAGG 20 20 50.0 55.0 57.9 58.0 0.0 0.0 0.144798 58485 58786 438-438 1.000000 79.0 rrn5-rrn4.5_p4 rrn5-rrn4.5 4 CAAGTTCGGGATGGATTGGT GCCAGCGATTAGACGATAGG 20 20 50.0 55.0 57.9 58.0 0.0 0.0 0.144798 58485 58786 436-436 1.000000 79.0 rrn5-rrn4.5_p5 rrn5-rrn4.5 5 CACCAAGTTCGGGATGGATT GCCAGCGATTAGACGATAGG 20 20 50.0 55.0 57.9 58.0 0.0 0.0 0.144798 58485 58786 439-439 1.000000 79.0 trnI-GAU-rrn16_p1 trnI-GAU-rrn16 1 GGCACAACGACGCAATTATC CAAGGTAGCCGTACTGGAAG 20 20 50.0 55.0 58.2 57.7 0.0 7.8 0.485056 63812 64877 1028-1160 1.000000 80.2 trnI-GAU-rrn16_p2 trnI-GAU-rrn16 2 GGCACAACGACGCAATTATC AGTGACTGGAGTGAAGTCGT 20 20 50.0 50.0 58.2 58.3 0.0 0.0 0.496177 63812 64877 1050-1182 1.000000 80.1 trnI-GAU-rrn16_p3 trnI-GAU-rrn16 3 GGCACAACGACGCAATTATC AAGTCGTAACAAGGTAGCCG 20 20 50.0 50.0 58.2 57.6 0.0 0.0 0.548742 63812 64877 1037-1169 1.000000 79.7 trnI-GAU-rrn16_p4 trnI-GAU-rrn16 4 GGCACAACGACGCAATTATC AACAAGGTAGCCGTACTGGA 20 20 50.0 50.0 58.2 58.4 0.0 7.8 0.553655 63812 64877 1030-1162 1.000000 79.6 trnI-GAU-rrn16_p5 trnI-GAU-rrn16 5 GGCACAACGACGCAATTATC ACAAGGTAGCCGTACTGGAA 20 20 50.0 50.0 58.2 58.4 0.0 7.8 0.553655 63812 64877 1029-1161 1.000000 79.6 rpl16_p1 rpl16 1 TAACCATCTTGGAGCAGTGC AGAATTGTTACCTCGGCAGA 20 20 50.0 45.0 57.9 56.6 7.1 0.0 1.557231 84473 85835 1466-1466 1.000000 67.6 rpl16_p2 rpl16 2 TAACCATCTTGGAGCAGTGC AAGAATTGTTACCTCGGCAGA 20 21 50.0 42.9 57.9 57.3 7.1 0.0 1.809690 84473 85835 1467-1467 1.000000 65.6 rpl16_p3 rpl16 3 TAACCATCTTGGAGCAGTGC AGAATTGTTACCTCGGCAGAA 20 21 50.0 42.9 57.9 57.3 7.1 0.0 1.809690 84473 85835 1466-1466 1.000000 65.6 rpl16_p4 rpl16 4 TAACCATCTTGGAGCAGTGC AAGAATTGTTACCTCGGCAGAA 20 22 50.0 40.9 57.9 58.0 7.1 0.0 2.129732 84473 85835 1467-1467 1.000000 63.0 rpl16_p5 rpl16 5 TAACCATCTTGGAGCAGTGC AGAATTGTTACCTCGGCAGAAA 20 22 50.0 40.9 57.9 58.0 7.1 0.0 2.129732 84473 85835 1466-1466 1.000000 63.0 petD-petB_p1 petD-petB 1 GATCTGCACAGCCTAACCAA TGCACTTTCTAATGATCCGCA 20 21 50.0 42.9 57.9 58.0 0.0 0.0 1.129299 90510 90732 298-313 1.000000 74.9 petD-petB_p2 petD-petB 2 TTGATCTGCACAGCCTAACC TGCACTTTCTAATGATCCGCA 20 21 50.0 42.9 57.9 58.0 0.0 0.0 1.129299 90510 90732 300-315 1.000000 74.9 petD-petB_p3 petD-petB 3 GATCTGCACAGCCTAACCAA CCGCAAACAAGGTATTTCAGG 20 21 50.0 47.6 57.9 57.8 0.0 0.0 1.330008 90510 90732 282-297 1.000000 73.4 petD-petB_p4 petD-petB 4 TTGATCTGCACAGCCTAACC CCGCAAACAAGGTATTTCAGG 20 21 50.0 47.6 57.9 57.8 0.0 0.0 1.330008 90510 90732 284-299 1.000000 73.4 petD-petB_p5 petD-petB 5 GTTCAAGTCACACACTCCCA TGCACTTTCTAATGATCCGCA 20 21 50.0 42.9 57.7 58.0 0.0 0.0 1.341021 90510 90732 276-291 1.000000 73.3 ccsA-clpP1_p1 ccsA-clpP1 1 GGGTTACACAGCTATGGGTG AAAGATGATTTGTTTTCTGTGT 20 22 55.0 27.3 58.0 52.8 6.7 0.0 7.276287 115575 116104 584-584 1.000000 40.0 ccsA-clpP1_p2 ccsA-clpP1 2 GGTTACACAGCTATGGGTGG AAAGATGATTTGTTTTCTGTGT 20 22 55.0 27.3 58.0 52.8 13.1 0.0 7.276287 115575 116104 583-583 1.000000 40.0 ccsA-clpP1_p3 ccsA-clpP1 3 GAAAGGGGATAAACCGGCAA AAAGATGATTTGTTTTCTGTGT 20 22 50.0 27.3 58.2 52.8 0.0 0.0 7.395848 115575 116104 669-669 1.000000 40.0 ccsA-clpP1_p4 ccsA-clpP1 4 GGGTTACACAGCTATGGGTG AAAAGATGATTTGTTTTCTGTGT 20 23 55.0 26.1 58.0 53.6 6.7 0.0 7.427532 115575 116104 585-585 1.000000 40.0 ccsA-clpP1_p5 ccsA-clpP1 5 GGTTACACAGCTATGGGTGG AAAAGATGATTTGTTTTCTGTGT 20 23 55.0 26.1 58.0 53.6 13.1 0.0 7.427532 115575 116104 584-584 1.000000 40.0 clpP1_p1 clpP1 1 TATAGCATTCCTCGCGTTGG GCTTATCAAAACCCGGTCCA 20 20 50.0 50.0 57.9 58.2 5.8 0.0 0.319936 116105 116782 816-816 1.000000 77.6 clpP1_p2 clpP1 2 TATAGCATTCCTCGCGTTGG TGCTTATCAAAACCCGGTCC 20 20 50.0 50.0 57.9 58.2 5.8 0.0 0.319936 116105 116782 817-817 1.000000 77.6 clpP1_p3 clpP1 3 TATAGCATTCCTCGCGTTGG TCAAAACCCGGTCCAAGAAA 20 20 50.0 45.0 57.9 57.6 5.8 0.0 0.587716 116105 116782 811-811 1.000000 75.5 clpP1_p4 clpP1 4 TATAGCATTCCTCGCGTTGG ATCAAAACCCGGTCCAAGAA 20 20 50.0 45.0 57.9 57.3 5.8 0.0 0.817059 116105 116782 812-812 1.000000 73.7 clpP1_p5 clpP1 5 CACGAGGTGCTCCATTCTTA GCTTATCAAAACCCGGTCCA 20 20 50.0 50.0 57.3 58.2 7.7 0.0 0.843982 116105 116782 791-791 1.000000 73.5 clpP1-accD_p1 clpP1-accD 1 CTCTGCATCGAAGGCTGATT TTGTCGCACTCGGAGTTATG 20 20 50.0 50.0 58.0 58.0 17.8 8.2 0.058373 116783 117224 1310-1311 1.000000 79.6 clpP1-accD_p2 clpP1-accD 2 TCTGCATCGAAGGCTGATTC TTGTCGCACTCGGAGTTATG 20 20 50.0 50.0 58.1 58.0 14.9 8.2 0.063813 116783 117224 1309-1310 1.000000 79.6 clpP1-accD_p3 clpP1-accD 3 ACCTTAGGGATGGGGTTTGA TTGTCGCACTCGGAGTTATG 20 20 50.0 50.0 57.9 58.0 2.3 8.2 0.078032 116783 117224 898-899 1.000000 79.5 clpP1-accD_p4 clpP1-accD 4 ACTCCCTCTGTCATTCCTCC TTGTCGCACTCGGAGTTATG 20 20 55.0 50.0 58.1 58.0 0.0 8.2 0.136428 116783 117224 1105-1106 1.000000 79.0 clpP1-accD_p5 clpP1-accD 5 CTCCCTCTGTCATTCCTCCA TTGTCGCACTCGGAGTTATG 20 20 55.0 50.0 58.1 58.0 0.0 8.2 0.137783 116783 117224 1104-1105 1.000000 79.0 accD_p1 accD 1 AAAGAGCTCGTGGAACCATG ACCGAATGAATAGGATGAAAA 20 21 50.0 33.3 58.2 52.9 8.4 0.0 6.284673 117225 119444 2363-2458 1.000000 40.0 accD_p2 accD 2 AAAGAGCTCGTGGAACCATG ACCGAATGAATAGGATGAAAAA 20 22 50.0 31.8 58.2 53.8 8.4 0.0 6.399413 117225 119444 2363-2458 1.000000 40.0 accD_p3 accD 3 AAAAGAGCTCGTGGAACCAT ACCGAATGAATAGGATGAAAA 20 21 45.0 33.3 57.4 52.9 8.4 0.0 6.666809 117225 119444 2364-2459 1.000000 40.0 accD_p4 accD 4 AAAGAGCTCGTGGAACCATG TGGATTTTTACTGCTTAAAGTTGT 20 24 50.0 29.2 58.2 55.5 8.4 0.0 6.722842 117225 119444 2304-2399 1.000000 40.0 accD_p5 accD 5 AAAAGAGCTCGTGGAACCAT ACCGAATGAATAGGATGAAAAA 20 22 45.0 31.8 57.4 53.8 8.4 0.0 6.781549 117225 119444 2364-2459 1.000000 40.0 ndhJ-chlN_p1 ndhJ-chlN 1 GTTGGATTGGGTGGCCTTTA ATTCATGGGTTTGCCAATGC 20 20 50.0 45.0 58.1 57.6 3.3 0.0 0.474961 127142 128066 1106-1107 1.000000 76.3 ndhJ-chlN_p2 ndhJ-chlN 2 TTGGATTGGGTGGCCTTTAC ATTCATGGGTTTGCCAATGC 20 20 50.0 45.0 58.1 57.6 3.3 0.0 0.474961 127142 128066 1105-1106 1.000000 76.3 ndhJ-chlN_p3 ndhJ-chlN 3 GTTGGATTGGGTGGCCTTTA CCAGATTCATGGGTTTGCCA 20 20 50.0 50.0 58.1 58.4 3.3 0.0 0.508997 127142 128066 1110-1111 1.000000 76.0 ndhJ-chlN_p4 ndhJ-chlN 4 TTGGATTGGGTGGCCTTTAC CCAGATTCATGGGTTTGCCA 20 20 50.0 50.0 58.1 58.4 3.3 0.0 0.508997 127142 128066 1109-1110 1.000000 76.0 ndhJ-chlN_p5 ndhJ-chlN 5 GCCTGAAAGTTGGATTGGGT ATTCATGGGTTTGCCAATGC 20 20 50.0 45.0 58.4 57.6 0.0 0.0 0.774007 127142 128066 1114-1115 1.000000 73.9