feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH tRNA trnH trnH 3 76 -1 74 LSC 0.000000 0 0 0 10 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_001 igs trnH|psbA trnH-psbA 77 349 0 273 LSC 0.037377 20 1 74 51 yes 1.000000 4 1.000000 0.037457 0.996337 67.600000 psbA gene psbA psbA 350 1411 -1 1062 LSC 0.005179 11 0 9 113 no 1.000000 4 1.000000 0.005179 1.000000 48.100000 IGS_002 igs psbA|trnK psbA-trnK 1412 1679 0 268 LSC 0.005597 3 0 38 67 no 0.500000 3 0.666667 0.005597 1.000000 34.900000 trnK_part2 tRNA trnK trnK 1680 1715 -1 36 LSC 0.000000 0 0 2 31 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 matK gene matK matK 2018 3538 -1 1521 LSC 0.008218 24 6 7 7 no 1.000000 4 1.000000 0.008238 1.000000 50.400000 IGS_005 igs matK|trnK matK-trnK 3539 4278 0 740 LSC 0.009685 14 5 5 38 no 1.000000 4 1.000000 0.009726 0.998649 51.600000 trnK_part1 tRNA trnK trnK 4279 4315 -1 37 LSC 0.000000 0 0 38 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_006 igs trnK|rps16 trnK-rps16 4316 4980 0 665 LSC 0.017570 22 31 75 45 yes 1.000000 4 1.000000 0.018137 0.977444 64.200000 rps16 gene rps16 rps16 4981 6153 -1 1173 LSC 0.011140 25 15 73 4 no 1.000000 4 1.000000 0.011195 0.993180 53.000000 IGS_007 igs rps16|trnQ rps16-trnQ 6154 6577 0 424 LSC 0.017296 14 6 52 81 no 1.000000 4 1.000000 0.017471 1.000000 57.600000 trnQ tRNA trnQ trnQ 6578 6649 -1 72 LSC 0.000000 0 0 7 9 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_008 igs trnQ|psbK trnQ-psbK 6650 6979 0 330 LSC 0.015657 9 1 79 35 no 1.000000 4 1.000000 0.015680 1.000000 51.600000 psbK gene psbK psbK 6980 7165 1 186 LSC 0.005376 2 0 16 52 no 0.500000 3 0.666667 0.005376 1.000000 33.100000 IGS_009 igs psbK|psbI psbK-psbI 7166 7547 0 382 LSC 0.009186 7 2 126 300 no 1.000000 4 1.000000 0.009209 0.994764 55.600000 psbI gene psbI psbI 7548 7658 1 111 LSC 0.000000 0 0 40 200 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_010 igs psbI|trnS psbI-trnS 7659 7747 0 89 LSC 0.000000 0 0 151 111 no 0.000000 1 0.000000 0.000000 1.000000 27.100000 trnS tRNA trnS trnS 7748 7836 -1 89 LSC 0.000000 0 0 240 22 no 0.000000 1 0.000000 0.000000 1.000000 20.400000 IGS_011 igs trnS|trnT trnS-trnT 7837 8480 0 644 LSC 0.015269 19 14 300 39 no 1.000000 4 1.000000 0.015553 0.989130 59.600000 trnT_part1 tRNA trnT trnT 8481 8514 1 34 LSC 0.000000 0 0 25 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 trnT_part2 tRNA trnT trnT 9235 9277 1 43 LSC 0.000000 0 0 121 35 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_014 igs trnT|trnR trnT-trnR 9278 9456 0 179 LSC 0.041899 14 20 164 83 yes 1.000000 4 1.000000 0.042906 0.983240 77.400000 trnR tRNA trnR trnR 9457 9528 1 72 LSC 0.000000 0 0 0 11 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_015 igs trnR|atpA trnR-atpA 9529 9802 0 274 LSC 0.021739 11 27 72 36 yes 1.000000 4 1.000000 0.021947 0.923358 58.300000 atpA gene atpA atpA 9803 11326 -1 1524 LSC 0.005468 15 0 4 300 no 1.000000 4 1.000000 0.005468 1.000000 47.700000 IGS_016 igs atpA|atpF atpA-atpF 11327 11391 0 65 LSC 0.000000 0 0 80 300 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 atpF gene atpF atpF 11392 12715 -1 1324 LSC 0.005168 12 43 145 43 no 1.000000 4 1.000000 0.004548 0.969033 53.400000 IGS_017 igs atpF|atpH atpF-atpH 12716 13178 0 463 LSC 0.016595 15 2 202 298 yes 1.000000 4 1.000000 0.016621 0.997840 67.900000 atpH gene atpH atpH 13179 13424 -1 246 LSC 0.000000 0 0 12 52 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_018 igs atpH|atpI atpH-atpI 13425 13926 0 502 LSC 0.012333 12 3 258 57 no 1.000000 4 1.000000 0.012345 0.996016 55.100000 atpI gene atpI atpI 13927 14676 -1 750 LSC 0.006222 9 0 71 47 no 1.000000 4 1.000000 0.006222 1.000000 51.600000 IGS_019 igs atpI|rps2 atpI-rps2 14677 14915 0 239 LSC 0.011158 5 0 23 300 no 0.500000 3 0.666667 0.011158 1.000000 37.500000 rps2 gene rps2 rps2 14916 15626 -1 711 LSC 0.003047 4 0 43 14 no 0.500000 3 0.666667 0.003047 1.000000 37.500000 IGS_020 igs rps2|rpoC2 rps2-rpoC2 15627 15843 0 217 LSC 0.009217 4 5 132 16 no 1.000000 4 1.000000 0.009325 1.000000 47.900000 rpoC2 gene rpoC2 rpoC2 15844 19968 -1 4125 LSC 0.006303 49 0 13 108 no 1.000000 4 1.000000 0.006303 1.000000 44.200000 IGS_021 igs rpoC2|rpoC1 rpoC2-rpoC1 19969 20149 0 181 LSC 0.005525 2 0 131 76 no 0.500000 3 0.666667 0.005525 1.000000 37.700000 rpoC1 gene rpoC1 rpoC1 20150 22978 -1 2829 LSC 0.003713 21 3 35 300 no 1.000000 4 1.000000 0.003715 0.999293 46.300000 IGS_022 igs rpoC1|rpoB rpoC1-rpoB 22979 23004 0 26 LSC 0.000000 0 0 96 300 no 0.000000 1 0.000000 0.000000 1.000000 25.900000 rpoB gene rpoB rpoB 23005 26223 -1 3219 LSC 0.003055 19 0 122 193 no 1.000000 4 1.000000 0.003055 1.000000 51.500000 IGS_023 igs rpoB|trnC rpoB-trnC 26224 27316 0 1093 LSC 0.013812 28 21 19 81 no 1.000000 4 1.000000 0.013300 0.991766 56.600000 trnC tRNA trnC trnC 27317 27388 1 72 LSC 0.000000 0 0 16 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_024 igs trnC|ycf6 trnC-ycf6 27389 28040 0 652 LSC 0.011759 15 5 88 20 no 1.000000 4 1.000000 0.011807 0.998466 54.300000 ycf6 gene ycf6 ycf6 28041 28130 1 90 LSC 0.012963 2 0 270 50 no 0.500000 3 0.666667 0.012963 1.000000 40.500000 IGS_025 igs ycf6|psbM ycf6-psbM 28131 28662 0 532 LSC 0.013784 14 1 42 18 no 1.000000 4 1.000000 0.013799 1.000000 53.400000 psbM gene psbM psbM 28663 28767 -1 105 LSC 0.004762 1 0 12 100 no 0.250000 2 0.500000 0.004762 1.000000 27.700000 IGS_026 igs psbM|trnD psbM-trnD 28768 29763 0 996 LSC 0.014755 29 7 86 100 yes 1.000000 4 1.000000 0.014789 0.997992 61.200000 trnD tRNA trnD trnD 29764 29840 -1 77 LSC 0.000000 0 0 45 23 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 IGS_027 igs trnD|trnY trnD-trnY 29841 30266 0 426 LSC 0.018388 14 8 122 120 yes 1.000000 4 1.000000 0.017020 0.997653 63.700000 trnY tRNA trnY trnY 30267 30352 -1 86 LSC 0.000000 0 0 0 34 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_028 igs trnY|trnE trnY-trnE 30353 30409 0 57 LSC 0.008772 1 0 86 156 no 0.250000 2 0.500000 0.008772 1.000000 36.000000 trnE tRNA trnE trnE 30410 30484 -1 75 LSC 0.000000 0 0 22 81 no 0.000000 1 0.000000 0.000000 1.000000 20.400000 IGS_029 igs trnE|trnT trnE-trnT 30485 31303 0 819 LSC 0.013872 22 7 97 125 no 1.000000 4 1.000000 0.013931 0.995116 61.500000 IGS_030 igs trnT|psbD trnT-psbD 31378 32475 0 1098 LSC 0.010777 22 23 92 173 no 1.000000 4 1.000000 0.010918 0.997268 60.400000 psbD gene psbD psbD 32476 33537 1 1062 LSC 0.002040 4 0 42 63 no 0.500000 3 0.666667 0.002040 1.000000 38.900000 psbC gene psbC psbC 33485 34906 1 1422 LSC 0.002696 7 0 277 111 no 1.000000 4 1.000000 0.002696 1.000000 53.900000 IGS_032 igs psbC|trnS psbC-trnS 34907 35086 0 180 LSC 0.008333 3 0 72 32 no 0.500000 3 0.666667 0.008333 1.000000 36.400000 trnS tRNA trnS trnS 35087 35178 -1 92 LSC 0.005435 1 0 21 56 no 0.250000 2 0.500000 0.005435 1.000000 28.800000 IGS_033 igs trnS|ycf9 trnS-ycf9 35179 35513 0 335 LSC 0.011940 8 0 59 119 no 1.000000 4 1.000000 0.011940 1.000000 51.000000 ycf9 gene ycf9 ycf9 35514 35702 1 189 LSC 0.002646 1 0 0 75 no 0.250000 2 0.500000 0.002646 1.000000 25.300000 IGS_034 igs ycf9|trnG ycf9-trnG 35703 36196 0 494 LSC 0.011806 11 14 69 129 no 1.000000 4 1.000000 0.011806 0.971660 57.300000 trnG tRNA trnG trnG 36197 36268 1 72 LSC 0.000000 0 0 8 57 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_035 igs trnG|trnM trnG-trnM 36269 36410 0 142 LSC 0.010638 3 1 80 210 no 1.000000 4 1.000000 0.010638 0.992958 51.600000 trnM tRNA trnM trnM 36411 36485 -1 75 LSC 0.000000 0 0 70 135 no 0.000000 1 0.000000 0.000000 1.000000 24.000000 IGS_036 igs trnM|rps14 trnM-rps14 36486 36645 0 160 LSC 0.003125 1 0 145 69 no 0.250000 2 0.500000 0.003125 1.000000 30.800000 rps14 gene rps14 rps14 36646 36948 -1 303 LSC 0.003300 2 0 24 11 no 0.500000 3 0.666667 0.003300 1.000000 31.300000 IGS_037 igs rps14|psaB rps14-psaB 36949 37082 0 134 LSC 0.018657 5 5 84 150 no 0.500000 3 0.666667 0.019187 1.000000 51.900000 psaB gene psaB psaB 37083 39287 -1 2205 LSC 0.002268 10 0 27 300 no 1.000000 4 1.000000 0.002268 1.000000 45.900000 IGS_038 igs psaB|psaA psaB-psaA 39288 39312 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaA gene psaA psaA 39313 41565 -1 2253 LSC 0.002071 9 0 300 49 no 1.000000 4 1.000000 0.002071 1.000000 47.300000 IGS_039 igs psaA|ycf3 psaA-ycf3 41566 42292 0 727 LSC 0.014901 18 155 119 171 yes 1.000000 4 1.000000 0.015001 0.993122 66.900000 ycf3 gene ycf3 ycf3 42293 44305 -1 2013 LSC 0.004802 18 18 50 141 no 1.000000 4 1.000000 0.004665 0.996523 50.700000 IGS_040 igs ycf3|trnS ycf3-trnS 44306 44540 0 235 LSC 0.004255 2 0 166 49 no 0.500000 3 0.666667 0.004255 1.000000 34.800000 trnS tRNA trnS trnS 44541 44627 1 87 LSC 0.005747 1 0 34 15 no 0.250000 2 0.500000 0.005747 1.000000 28.600000 IGS_041 igs trnS|rps4 trnS-rps4 44628 44941 0 314 LSC 0.010085 5 17 37 24 no 1.000000 4 1.000000 0.009263 1.000000 51.900000 rps4 gene rps4 rps4 44942 45547 -1 606 LSC 0.001650 2 0 55 95 no 0.500000 3 0.666667 0.001650 1.000000 39.700000 IGS_042 igs rps4|trnT rps4-trnT 45548 45925 0 378 LSC 0.007937 6 0 300 207 no 1.000000 4 1.000000 0.007937 1.000000 59.700000 IGS_043 igs trnT|trnL trnT-trnL 46001 46854 0 854 LSC 0.015758 22 70 144 211 yes 1.000000 4 1.000000 0.013208 0.934426 68.900000 trnL_part1 tRNA trnL trnL 46855 46889 1 35 LSC 0.000000 0 0 0 176 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 trnL_part2 tRNA trnL trnL 47394 47443 1 50 LSC 0.013333 1 0 166 101 no 0.000000 2 0.000000 0.013333 1.000000 34.800000 IGS_046 igs trnL|trnF trnL-trnF 47444 47749 0 306 LSC 0.034858 21 7 32 134 yes 1.000000 4 1.000000 0.034101 1.000000 67.000000 trnF tRNA trnF trnF 47750 47822 1 73 LSC 0.000000 0 0 17 61 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_047 igs trnF|ndhJ trnF-ndhJ 47823 48403 0 581 LSC 0.009753 11 8 90 4 no 1.000000 4 1.000000 0.009825 1.000000 52.000000 ndhJ gene ndhJ ndhJ 48404 48880 -1 477 LSC 0.002446 2 0 117 70 no 0.500000 3 0.666667 0.002446 1.000000 38.700000 IGS_048 igs ndhJ|psbG ndhJ-psbG 48881 48983 0 103 LSC 0.004854 1 1 300 27 no 0.500000 3 0.666667 0.004870 1.000000 34.700000 psbG gene psbG psbG 48984 49661 -1 678 LSC 0.002212 3 0 32 22 no 0.250000 2 0.500000 0.002212 1.000000 32.900000 IGS_049 igs psbG|ndhC psbG-ndhC 49662 49727 0 66 LSC 0.050505 5 2 269 188 yes 0.500000 3 0.666667 0.046635 0.984848 77.400000 ndhC gene ndhC ndhC 49728 50090 -1 363 LSC 0.005969 4 0 1 6 no 1.000000 4 1.000000 0.005969 1.000000 43.000000 IGS_050 igs ndhC|trnV ndhC-trnV 50091 50940 0 850 LSC 0.013080 20 164 71 189 no 1.000000 4 1.000000 0.013420 0.987059 62.300000 trnV_part2 tRNA trnV trnV 50941 50975 -1 35 LSC 0.000000 0 0 36 154 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 trnV_part1 tRNA trnV trnV 51582 51620 -1 39 LSC 0.000000 0 0 105 120 no 0.000000 1 0.000000 0.000000 1.000000 26.600000 IGS_053 igs trnV|trnM trnV-trnM 51621 51804 0 184 LSC 0.002717 1 0 144 95 no 0.250000 2 0.500000 0.002717 1.000000 32.500000 trnM tRNA trnM trnM 51805 51877 1 73 LSC 0.000000 0 0 63 22 no 0.000000 1 0.000000 0.000000 1.000000 20.400000 IGS_054 igs trnM|atpE trnM-atpE 51878 52019 0 142 LSC 0.015366 4 4 136 144 no 1.000000 4 1.000000 0.013173 0.985915 61.100000 atpE gene atpE atpE 52020 52418 -1 399 LSC 0.006266 5 0 70 260 no 1.000000 4 1.000000 0.006266 1.000000 49.200000 atpB gene atpB atpB 52415 53911 -1 1497 LSC 0.002449 7 0 41 13 no 1.000000 4 1.000000 0.002449 1.000000 46.400000 IGS_056 igs atpB|rbcL atpB-rbcL 53912 54711 0 800 LSC 0.007946 12 22 113 158 no 1.000000 4 1.000000 0.008057 0.993750 60.700000 rbcL gene rbcL rbcL 54712 56151 1 1440 LSC 0.003241 9 0 114 68 no 1.000000 4 1.000000 0.003241 1.000000 51.100000 IGS_057 igs rbcL|accD rbcL-accD 56152 56824 0 673 LSC 0.018326 24 5 3 71 yes 1.000000 4 1.000000 0.018433 1.000000 57.500000 accD gene accD accD 56825 58273 1 1449 LSC 0.007706 21 0 67 42 no 1.000000 4 1.000000 0.007706 1.000000 52.200000 IGS_058 igs accD|psaI accD-psaI 58274 58737 0 464 LSC 0.014368 13 4 2 132 no 1.000000 4 1.000000 0.013693 1.000000 52.000000 psaI gene psaI psaI 58738 58851 1 114 LSC 0.000000 0 0 4 18 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_059 igs psaI|ycf4 psaI-ycf4 58852 59242 0 391 LSC 0.012361 9 3 118 41 no 1.000000 4 1.000000 0.012404 1.000000 51.800000 ycf4 gene ycf4 ycf4 59243 59797 1 555 LSC 0.005706 6 0 128 54 no 1.000000 4 1.000000 0.005706 1.000000 50.800000 IGS_060 igs ycf4|ycf10/cemA ycf4-ycf10/cemA 59798 60228 0 431 LSC 0.009281 8 12 68 3 no 1.000000 4 1.000000 0.009448 0.993039 50.100000 ycf10/cemA gene ycf10/cemA ycf10/cemA 60229 60918 1 690 LSC 0.015700 20 0 139 3 yes 1.000000 4 1.000000 0.015700 1.000000 54.700000 IGS_061 igs ycf10/cemA|petA ycf10/cemA-petA 60919 61140 0 222 LSC 0.020270 8 0 5 140 no 1.000000 4 1.000000 0.020270 1.000000 51.500000 petA gene petA petA 61141 62103 1 963 LSC 0.004500 8 0 25 61 no 1.000000 4 1.000000 0.004500 1.000000 48.700000 IGS_062 igs petA|psbJ petA-psbJ 62104 63103 0 1000 LSC 0.015333 27 124 174 48 yes 1.000000 4 1.000000 0.014596 0.994000 62.800000 psbJ gene psbJ psbJ 63104 63226 -1 123 LSC 0.008130 2 0 5 4 no 0.500000 3 0.666667 0.008130 1.000000 34.100000 IGS_063 igs psbJ|psbL psbJ-psbL 63227 63364 0 138 LSC 0.012077 3 0 5 300 no 0.500000 3 0.666667 0.012077 1.000000 36.700000 psbL gene psbL psbL 63365 63481 -1 117 LSC 0.000000 0 0 6 300 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_064 igs psbL|psbF psbL-psbF 63482 63502 0 21 LSC 0.000000 0 0 123 300 no 0.000000 1 0.000000 0.000000 1.000000 28.000000 psbF gene psbF psbF 63503 63622 -1 120 LSC 0.000000 0 0 144 300 no 0.000000 1 0.000000 0.000000 1.000000 29.500000 IGS_065 igs psbF|psbE psbF-psbE 63623 63631 0 9 LSC 0.000000 0 0 264 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psbE gene psbE psbE 63632 63883 -1 252 LSC 0.000000 0 0 273 56 no 0.000000 1 0.000000 0.000000 1.000000 22.900000 IGS_066 igs psbE|ORF31 psbE-ORF31 63884 64835 0 952 LSC 0.007361 13 3 300 122 no 1.000000 4 1.000000 0.007368 0.998950 58.300000 ORF31 gene ORF31 ORF31 64836 64931 1 96 LSC 0.000000 0 0 73 26 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_067 igs ORF31|petG ORF31-petG 64932 65118 0 187 LSC 0.011586 4 0 169 53 no 1.000000 4 1.000000 0.011586 1.000000 49.400000 petG gene petG petG 65119 65232 1 114 LSC 0.004386 1 0 77 14 no 0.250000 2 0.500000 0.004386 1.000000 27.600000 IGS_068 igs petG|trnW petG-trnW 65233 65355 0 123 LSC 0.012195 3 0 60 134 no 1.000000 4 1.000000 0.012195 1.000000 50.500000 trnW tRNA trnW trnW 65356 65429 -1 74 LSC 0.000000 0 0 36 60 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_069 igs trnW|trnP trnW-trnP 65430 65614 0 185 LSC 0.007207 2 1 110 150 no 1.000000 4 1.000000 0.007227 1.000000 51.000000 trnP tRNA trnP trnP 65615 65689 -1 75 LSC 0.000000 0 0 123 75 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 IGS_070 igs trnP|psaJ trnP-psaJ 65690 66041 0 352 LSC 0.007102 5 8 198 101 no 1.000000 4 1.000000 0.007165 1.000000 53.800000 psaJ gene psaJ psaJ 66042 66176 1 135 LSC 0.003704 1 0 105 76 no 0.250000 2 0.500000 0.003704 1.000000 31.700000 IGS_071 igs psaJ|rpl33 psaJ-rpl33 66177 66604 0 428 LSC 0.012461 10 8 33 75 no 1.000000 4 1.000000 0.012611 1.000000 53.400000 rpl33 gene rpl33 rpl33 66605 66805 1 201 LSC 0.004975 2 0 25 54 no 0.500000 3 0.666667 0.004975 1.000000 33.500000 IGS_072 igs rpl33|rps18 rpl33-rps18 66806 67019 0 214 LSC 0.009346 4 9 71 156 no 1.000000 4 1.000000 0.009619 1.000000 54.300000 rps18 gene rps18 rps18 67020 67325 1 306 LSC 0.001634 1 0 74 54 no 0.250000 2 0.500000 0.001634 1.000000 28.800000 IGS_073 igs rps18|rpl20 rps18-rpl20 67326 67625 0 300 LSC 0.033889 19 3 149 101 yes 1.000000 4 1.000000 0.032948 0.996667 69.300000 rpl20 gene rpl20 rpl20 67626 67979 -1 354 LSC 0.002825 2 0 42 32 no 0.500000 3 0.666667 0.002825 1.000000 33.600000 IGS_074 igs rpl20|rps12 rpl20-rps12 67980 68720 0 741 LSC 0.008322 12 16 62 208 no 1.000000 4 1.000000 0.008415 1.000000 56.700000 rps12_part1 gene rps12 rps12 68721 68834 -1 114 LSC 0.000000 0 0 119 94 no 0.000000 1 0.000000 0.000000 1.000000 25.800000 IGS_075 igs rps12|clpP rps12-clpP 68835 69020 0 186 LSC 0.008287 3 5 233 131 no 0.500000 3 0.666667 0.008287 0.973118 46.100000 clpP gene clpP clpP 69021 71073 -1 2053 LSC 0.008605 33 4 3 10 no 1.000000 4 1.000000 0.008453 1.000000 48.900000 IGS_076 igs clpP|psbB clpP-psbB 71074 71559 0 486 LSC 0.007545 7 7 158 47 no 1.000000 4 1.000000 0.007634 0.989712 51.600000 psbB gene psbB psbB 71560 73086 1 1527 LSC 0.005457 16 0 213 52 no 1.000000 4 1.000000 0.005457 1.000000 51.400000 IGS_077 igs psbB|psbT psbB-psbT 73087 73269 0 183 LSC 0.006375 2 9 108 77 no 0.500000 3 0.666667 0.006517 1.000000 43.900000 psbT gene psbT psbT 73270 73371 1 102 LSC 0.004902 1 0 96 230 no 0.250000 2 0.500000 0.004902 1.000000 34.100000 IGS_078 igs psbT|psbN psbT-psbN 73372 73436 0 65 LSC 0.000000 0 0 24 165 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 psbN gene psbN psbN 73437 73568 -1 132 LSC 0.000000 0 0 89 33 no 0.000000 1 0.000000 0.000000 1.000000 21.200000 IGS_079 igs psbN|psbH psbN-psbH 73569 73672 0 104 LSC 0.009615 2 0 221 237 no 0.250000 2 0.500000 0.009615 1.000000 45.200000 psbH gene psbH psbH 73673 73894 1 222 LSC 0.000000 0 0 22 15 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_080 igs psbH|petB psbH-petB 73895 74020 0 126 LSC 0.015873 4 1 244 35 no 0.500000 3 0.666667 0.015937 1.000000 42.800000 petB gene petB petB 74021 75462 1 1442 LSC 0.004045 11 8 61 121 no 1.000000 4 1.000000 0.004061 1.000000 51.700000 IGS_081 igs petB|petD petB-petD 75463 75650 0 188 LSC 0.006206 2 0 204 117 no 0.500000 3 0.666667 0.006206 1.000000 41.000000 petD gene petD petD 75651 76850 1 1200 LSC 0.009167 21 2 33 37 no 1.000000 4 1.000000 0.009174 1.000000 52.700000 IGS_082 igs petD|rpoA petD-rpoA 76851 77061 0 211 LSC 0.007463 3 13 75 32 no 1.000000 4 1.000000 0.007526 0.952607 49.500000 rpoA gene rpoA rpoA 77062 78045 -1 984 LSC 0.006098 11 0 34 30 no 1.000000 4 1.000000 0.006098 1.000000 50.100000 IGS_083 igs rpoA|rps11 rpoA-rps11 78046 78114 0 69 LSC 0.007246 1 0 78 261 no 0.250000 2 0.500000 0.007246 1.000000 34.400000 rps11 gene rps11 rps11 78115 78531 -1 417 LSC 0.002398 2 0 38 68 no 0.500000 3 0.666667 0.002398 1.000000 35.100000 IGS_084 igs rps11|rpl36 rps11-rpl36 78532 78647 0 116 LSC 0.008621 2 9 149 48 no 0.500000 3 0.666667 0.009104 1.000000 43.400000 rpl36 gene rpl36 rpl36 78648 78761 -1 114 LSC 0.008772 2 0 44 1 no 0.500000 3 0.666667 0.008772 1.000000 34.300000 IGS_085 igs rpl36|rps8 rpl36-rps8 78762 79235 0 474 LSC 0.019421 17 12 17 110 no 1.000000 4 1.000000 0.019645 0.995781 58.500000 rps8 gene rps8 rps8 79236 79640 -1 405 LSC 0.003704 3 0 11 88 no 0.500000 3 0.666667 0.003704 1.000000 33.700000 IGS_086 igs rps8|rpl14 rps8-rpl14 79641 79857 0 217 LSC 0.011521 5 0 107 51 no 0.500000 3 0.666667 0.011521 1.000000 40.000000 rpl14 gene rpl14 rpl14 79858 80226 -1 369 LSC 0.004065 3 0 25 73 no 1.000000 4 1.000000 0.004065 1.000000 43.700000 IGS_087 igs rpl14|rpl16 rpl14-rpl16 80227 80396 0 170 LSC 0.010135 3 24 170 26 no 1.000000 4 1.000000 0.010274 0.858824 47.500000 rpl16 gene rpl16 rpl16 80397 81953 -1 1557 LSC 0.018650 51 76 2 135 yes 1.000000 4 1.000000 0.017806 0.957611 61.100000 IGS_088 igs rpl16|rps3 rpl16-rps3 81954 82131 0 178 LSC 0.005618 2 15 81 13 no 0.500000 3 0.666667 0.005961 1.000000 38.600000 rps3 gene rps3 rps3 82132 82788 -1 657 LSC 0.004566 6 0 6 54 no 0.500000 3 0.666667 0.004566 1.000000 38.000000 rpl22 gene rpl22 rpl22 82773 83255 -1 483 LSC 0.004831 4 0 28 3 no 0.500000 3 0.666667 0.004831 1.000000 35.400000 IGS_090 igs rpl22|rps19 rpl22-rps19 83256 83309 0 54 LSC 0.021605 2 0 25 111 no 0.500000 3 0.666667 0.021605 1.000000 44.400000 rps19 gene rps19 rps19 83310 83588 -1 279 LSC 0.003584 2 0 11 171 no 0.500000 3 0.666667 0.003584 1.000000 31.500000 IGS_091 igs rps19|rpl2 rps19-rpl2 83589 83642 0 54 IRb 0.000000 0 0 98 117 no 0.000000 1 0.000000 0.000000 1.000000 26.100000 rpl2 gene rpl2 rpl2 83643 85149 -1 1507 IRb 0.001991 6 0 152 300 no 1.000000 4 1.000000 0.001991 1.000000 56.500000 IGS_092 igs rpl2|rpl23 rpl2-rpl23 85150 85167 0 18 IRb 0.000000 0 0 75 300 no 0.000000 1 0.000000 NA 1.000000 24.400000 rpl23 gene rpl23 rpl23 85168 85449 -1 282 IRb 0.000000 0 0 93 300 no 0.000000 1 0.000000 0.000000 1.000000 25.700000 IGS_093 igs rpl23|trnM rpl23-trnM 85450 85616 0 167 IRb 0.000000 0 0 300 261 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnM tRNA trnM trnM 85617 85691 -1 75 IRb 0.000000 0 0 300 186 no 0.000000 1 0.000000 0.000000 1.000000 32.700000 IGS_094 igs trnM|ycf2 trnM-ycf2 85692 85779 0 88 IRb 0.000000 0 0 300 98 no 0.000000 1 0.000000 0.000000 1.000000 26.100000 ycf2 gene ycf2 ycf2 85780 92646 1 6867 IRb 0.001747 23 36 300 300 no 1.000000 4 1.000000 0.001704 1.000000 54.300000 IGS_095 igs ycf2|orf77 ycf2-orf77 92647 92782 0 136 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 orf77 gene orf77 orf77 92783 93016 1 234 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_096 igs orf77|trnL orf77-trnL 93017 93562 0 546 IRb 0.001832 2 22 300 300 yes 1.000000 4 1.000000 0.001875 1.000000 63.600000 IGS_097 igs trnL|ndhB trnL-ndhB 93646 94218 0 573 IRb 0.000873 1 11 154 300 no 0.250000 2 0.500000 0.000890 1.000000 43.500000 ndhB gene ndhB ndhB 94219 96436 -1 2218 IRb 0.000977 4 0 83 50 no 1.000000 4 1.000000 0.000977 1.000000 46.700000 IGS_098 igs ndhB|rps7 ndhB-rps7 96437 96749 0 313 IRb 0.002130 1 6 220 300 no 0.500000 3 0.666667 0.001068 1.000000 47.000000 rps7 gene rps7 rps7 96750 97217 -1 468 IRb 0.000000 0 0 262 243 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_099 igs rps7|trnV rps7-trnV 97218 99995 0 2778 IRb 0.002650 14 31 300 300 no 1.000000 4 1.000000 0.002663 0.995680 59.100000 IGS_100 igs trnV|rrn16S trnV-rrn16S 100068 100298 0 231 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 100299 101789 1 1491 IRb 0.000335 1 0 300 291 no 0.250000 2 0.500000 0.000335 1.000000 44.900000 IGS_101 igs rrn16S|trnI rrn16S-trnI 101790 102087 0 298 IRb 0.001678 1 0 300 5 no 0.250000 2 0.500000 0.001701 1.000000 24.900000 trnI_part1 tRNA trnI trnI 102088 102119 1 32 IRb 0.020833 1 0 6 300 no 0.000000 2 0.000000 0.020833 1.000000 32.500000 orf133 gene orf133 orf133 102469 102804 1 336 IRb 0.000000 0 0 300 135 no 0.000000 1 0.000000 0.000000 1.000000 29.600000 IGS_104 igs orf133|trnI orf133-trnI 102805 103066 0 262 IRb 0.003817 2 0 300 300 no 0.500000 3 0.666667 0.003817 1.000000 45.800000 trnI_part2 tRNA trnI trnI 103067 103106 1 40 IRb 0.000000 0 0 6 300 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_105 igs trnI|trnA trnI-trnA 103107 103170 0 64 IRb 0.000000 0 0 46 293 no 0.000000 1 0.000000 0.000000 1.000000 22.200000 trnA_part1 tRNA trnA trnA 103171 103207 1 37 IRb 0.000000 0 0 110 256 no 0.000000 1 0.000000 0.000000 1.000000 27.000000 trnA_part2 tRNA trnA trnA 104009 104044 1 36 IRb 0.000000 0 0 300 47 no 0.000000 1 0.000000 0.000000 1.000000 22.300000 IGS_108 igs trnA|rrn23S trnA-rrn23S 104045 104196 0 152 IRb 0.003289 1 0 300 300 no 0.250000 2 0.500000 0.003289 1.000000 40.700000 rrn23S rRNA rrn23S rrn23S 104197 107006 1 2810 IRb 0.000356 2 0 104 300 no 0.250000 2 0.500000 0.000356 1.000000 35.000000 IGS_109 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 107007 107104 0 98 IRb 0.000000 0 0 300 252 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 107105 107207 1 103 IRb 0.000000 0 0 300 149 no 0.000000 1 0.000000 0.000000 1.000000 29.900000 IGS_110 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 107208 107486 0 279 IRb 0.004049 2 32 300 300 no 0.500000 3 0.666667 0.004049 0.885305 48.000000 rrn5S rRNA rrn5S rrn5S 107487 107607 1 121 IRb 0.000000 0 0 40 300 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_111 igs rrn5S|trnR rrn5S-trnR 107608 107848 0 241 IRb 0.000000 0 1 161 242 no 0.000000 2 0.000000 0.000000 0.995851 31.200000 trnR tRNA trnR trnR 107849 107923 1 75 IRb 0.000000 0 0 300 167 no 0.000000 1 0.000000 0.000000 1.000000 31.300000 IGS_112 igs trnR|trnN trnR-trnN 107924 108556 0 633 IRb 0.002637 3 1 300 214 no 0.500000 3 0.666667 0.002637 0.998420 51.300000 trnN tRNA trnN trnN 108557 108630 -1 74 IRb 0.000000 0 0 190 140 no 0.000000 1 0.000000 0.000000 1.000000 29.200000 IGS_113 igs trnN|ycf1 trnN-ycf1 108631 108949 0 319 IRb 0.003135 2 0 264 300 no 0.500000 3 0.666667 0.003135 1.000000 45.700000 ycf1 gene ycf1 ycf1 108950 109981 1 1032 IRb 0.002261 4 33 89 54 no 1.000000 4 1.000000 0.002295 1.000000 53.000000 ndhF gene ndhF ndhF 109943 112183 -1 2241 SSC 0.007809 34 0 0 27 no 1.000000 4 1.000000 0.007810 1.000000 47.600000 IGS_115 igs ndhF|rpl32 ndhF-rpl32 112184 113056 0 873 SSC 0.013286 20 30 120 54 no 1.000000 4 1.000000 0.011621 0.971363 59.900000 rpl32 gene rpl32 rpl32 113057 113215 1 159 SSC 0.006289 2 0 19 80 no 0.500000 3 0.666667 0.006289 1.000000 34.000000 IGS_116 igs rpl32|trnL rpl32-trnL 113216 114012 0 797 SSC 0.014712 23 28 93 98 yes 1.000000 4 1.000000 0.014977 0.992472 64.900000 IGS_117 igs trnL|ycf5 trnL-ycf5 114095 114206 0 112 SSC 0.008929 2 1 155 128 no 0.250000 2 0.500000 0.009009 1.000000 40.300000 ycf5 gene ycf5 ycf5 114207 115193 1 987 SSC 0.007768 15 0 44 19 no 1.000000 4 1.000000 0.007768 1.000000 50.600000 IGS_118 igs ycf5|ndhD ycf5-ndhD 115194 115402 0 209 SSC 0.009569 4 0 36 235 no 1.000000 4 1.000000 0.009569 1.000000 46.900000 ndhD gene ndhD ndhD 115403 116905 -1 1503 SSC 0.005434 16 0 112 17 no 1.000000 4 1.000000 0.005434 1.000000 48.800000 IGS_119 igs ndhD|psaC ndhD-psaC 116906 117058 0 153 SSC 0.019608 6 2 254 123 no 1.000000 4 1.000000 0.019737 0.993464 61.800000 psaC gene psaC psaC 117059 117304 -1 246 SSC 0.002033 1 0 7 3 no 0.250000 2 0.500000 0.002033 1.000000 25.100000 IGS_120 igs psaC|ndhE psaC-ndhE 117305 117544 0 240 SSC 0.015972 7 0 122 18 no 1.000000 4 1.000000 0.015972 1.000000 49.700000 ndhE gene ndhE ndhE 117545 117850 -1 306 SSC 0.008170 5 0 23 103 no 0.500000 3 0.666667 0.008170 1.000000 35.700000 IGS_121 igs ndhE|ndhG ndhE-ndhG 117851 118099 0 249 SSC 0.012097 6 2 29 165 no 1.000000 4 1.000000 0.012124 0.995984 49.000000 ndhG gene ndhG ndhG 118100 118630 -1 531 SSC 0.004708 5 0 4 64 no 0.500000 3 0.666667 0.004708 1.000000 36.500000 IGS_122 igs ndhG|ndhI ndhG-ndhI 118631 118956 0 326 SSC 0.019669 12 8 165 9 no 1.000000 4 1.000000 0.018751 0.987730 54.700000 ndhI gene ndhI ndhI 118957 119469 -1 513 SSC 0.004873 5 0 38 273 no 0.500000 3 0.666667 0.004873 1.000000 38.800000 IGS_123 igs ndhI|ndhA ndhI-ndhA 119470 119553 0 84 SSC 0.000000 0 0 27 189 no 0.000000 1 0.000000 0.000000 1.000000 20.800000 ndhA gene ndhA ndhA 119554 121710 -1 2157 SSC 0.008731 36 5 111 112 no 1.000000 4 1.000000 0.008591 0.999073 57.000000 IGS_124 igs ndhA|ndhH ndhA-ndhH 121711 121711 0 1 SSC 0.000000 0 0 164 111 no 0.000000 1 0.000000 NA 1.000000 27.100000 ndhH gene ndhH ndhH 121712 122893 -1 1182 SSC 0.003948 9 0 165 20 no 1.000000 4 1.000000 0.003948 1.000000 48.000000 IGS_125 igs ndhH|rps15 ndhH-rps15 122894 122995 0 102 SSC 0.009804 2 0 62 12 no 0.250000 2 0.500000 0.009804 1.000000 31.200000 rps15 gene rps15 rps15 122996 123262 -1 267 SSC 0.007491 4 0 23 47 no 0.500000 3 0.666667 0.007491 1.000000 35.100000 IGS_126 igs rps15|ycf1 rps15-ycf1 123263 123594 0 332 SSC 0.024029 14 6 96 7 no 1.000000 4 1.000000 0.024029 0.981928 56.400000 ycf1 gene ycf1 ycf1 123595 128949 -1 5355 SSC 0.013039 132 75 19 89 yes 1.000000 4 1.000000 0.013068 0.997759 49.500000 IGS_127 igs ycf1|trnN ycf1-trnN 128950 129268 0 319 IRa 0.003135 2 0 300 264 no 0.500000 3 0.666667 0.003135 1.000000 45.700000 trnN tRNA trnN trnN 129269 129342 1 74 IRa 0.000000 0 0 140 190 no 0.000000 1 0.000000 0.000000 1.000000 29.200000 IGS_128 igs trnN|trnR trnN-trnR 129343 129975 0 633 IRa 0.002637 3 1 214 300 no 0.500000 3 0.666667 0.002637 0.998420 51.300000 trnR tRNA trnR trnR 129976 130050 -1 75 IRa 0.000000 0 0 167 300 no 0.000000 1 0.000000 0.000000 1.000000 31.300000 IGS_129 igs trnR|rrn5S trnR-rrn5S 130051 130291 0 241 IRa 0.000000 0 1 242 161 no 0.000000 2 0.000000 0.000000 0.995851 31.200000 rrn5S rRNA rrn5S rrn5S 130292 130412 -1 121 IRa 0.000000 0 0 300 40 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_130 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 130413 130691 0 279 IRa 0.004049 2 32 300 300 no 0.500000 3 0.666667 0.004049 0.885305 48.000000 rrn4.5S rRNA rrn4.5S rrn4.5S 130692 130794 -1 103 IRa 0.000000 0 0 149 300 no 0.000000 1 0.000000 0.000000 1.000000 29.900000 IGS_131 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 130795 130892 0 98 IRa 0.000000 0 0 252 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 130893 133702 -1 2810 IRa 0.000356 2 0 300 104 no 0.250000 2 0.500000 0.000356 1.000000 35.000000 IGS_132 igs rrn23S|trnA rrn23S-trnA 133703 133854 0 152 IRa 0.003289 1 0 300 300 no 0.250000 2 0.500000 0.003289 1.000000 40.700000 trnA_part2 tRNA trnA trnA 133855 133890 -1 36 IRa 0.000000 0 0 47 300 no 0.000000 1 0.000000 0.000000 1.000000 22.300000 trnA_part1 tRNA trnA trnA 134692 134728 -1 37 IRa 0.000000 0 0 256 110 no 0.000000 1 0.000000 0.000000 1.000000 27.000000 IGS_135 igs trnA|trnI trnA-trnI 134729 134792 0 64 IRa 0.000000 0 0 293 46 no 0.000000 1 0.000000 0.000000 1.000000 22.200000 trnI_part2 tRNA trnI trnI 134793 134832 -1 40 IRa 0.000000 0 0 300 6 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 orf133 gene orf133 orf133 135095 135430 -1 336 IRa 0.000000 0 0 135 300 no 0.000000 1 0.000000 0.000000 1.000000 29.600000 IGS_138 igs orf133|trnI orf133-trnI 135431 135779 0 349 IRa 0.000000 0 0 300 26 no 0.000000 1 0.000000 0.000000 1.000000 21.700000 trnI_part1 tRNA trnI trnI 135780 135811 -1 32 IRa 0.020833 1 0 300 300 no 0.000000 2 0.000000 0.020833 1.000000 47.000000 IGS_139 igs trnI|rrn16S trnI-rrn16S 135812 136109 0 298 IRa 0.000000 0 0 5 300 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 rrn16S rRNA rrn16S rrn16S 136110 137600 -1 1491 IRa 0.000335 1 0 300 300 no 0.250000 2 0.500000 0.000335 1.000000 44.900000 IGS_140 igs rrn16S|trnV rrn16S-trnV 137601 137831 0 231 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_141 igs trnV|rps12 trnV-rps12 137904 139833 0 1930 IRa 0.003040 11 31 300 8 no 1.000000 4 1.000000 0.003062 0.993782 47.200000 rps12_part2 gene rps12 rps12 139834 140628 1 795 IRa 0.001887 3 0 125 300 no 1.000000 4 1.000000 0.001887 1.000000 54.400000 IGS_142 igs rps12|rps7 rps12-rps7 140629 140681 0 53 IRa 0.000000 0 0 190 300 no 0.000000 1 0.000000 0.000000 1.000000 33.000000 rps7 gene rps7 rps7 140682 141149 1 468 IRa 0.000000 0 0 243 262 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_143 igs rps7|ndhB rps7-ndhB 141150 141462 0 313 IRa 0.001597 1 6 300 220 no 0.500000 3 0.666667 0.001611 1.000000 46.800000 ndhB gene ndhB ndhB 141463 143680 1 2218 IRa 0.000977 4 0 50 83 no 1.000000 4 1.000000 0.000977 1.000000 46.700000 IGS_144 igs ndhB|trnL ndhB-trnL 143681 144253 0 573 IRa 0.000873 1 11 300 154 no 0.250000 2 0.500000 0.000890 1.000000 43.500000 IGS_145 igs trnL|orf77 trnL-orf77 144337 144882 0 546 IRa 0.001832 2 22 300 300 yes 1.000000 4 1.000000 0.001875 1.000000 63.600000 orf77 gene orf77 orf77 144883 145116 -1 234 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_146 igs orf77|ycf2 orf77-ycf2 145117 145252 0 136 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf2 gene ycf2 ycf2 145253 152119 -1 6867 IRa 0.001747 23 36 300 300 no 1.000000 4 1.000000 0.001704 1.000000 54.300000 IGS_147 igs ycf2|trnM ycf2-trnM 152120 152207 0 88 IRa 0.000000 0 0 98 300 no 0.000000 1 0.000000 0.000000 1.000000 26.100000 trnM tRNA trnM trnM 152208 152282 1 75 IRa 0.000000 0 0 186 300 no 0.000000 1 0.000000 0.000000 1.000000 32.700000 IGS_148 igs trnM|rpl23 trnM-rpl23 152283 152449 0 167 IRa 0.000000 0 0 261 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl23 gene rpl23 rpl23 152450 152731 1 282 IRa 0.000000 0 0 300 93 no 0.000000 1 0.000000 0.000000 1.000000 25.700000 IGS_149 igs rpl23|rpl2 rpl23-rpl2 152732 152749 0 18 IRa 0.000000 0 0 300 75 no 0.000000 1 0.000000 NA 1.000000 24.400000 rpl2 gene rpl2 rpl2 152750 154256 1 1507 IRa 0.001991 6 0 300 152 no 1.000000 4 1.000000 0.001991 1.000000 56.500000 IGS_150 igs rpl2|trnH rpl2-trnH 154257 2 0 169 IRa 0.009862 3 1 117 84 no 1.000000 4 1.000000 0.007931 1.000000 51.100000