feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH-GUG tRNA trnH-GUG trnH-GUG 1 73 -1 73 LSC 0.027397 2 0 246 19 no 1.000000 2 1.000000 NA 1.000000 54.700000 IGS_001 igs trnH-GUG|psbA trnH-GUG-psbA 74 277 0 204 LSC 0.056122 11 8 43 20 no 1.000000 2 1.000000 NA 0.960784 72.000000 psbA gene psbA psbA 278 1339 -1 1062 LSC 0.010358 11 0 25 19 no 1.000000 2 1.000000 NA 1.000000 51.100000 IGS_002 igs psbA|trnK-UUU psbA-trnK-UUU 1340 1506 0 167 LSC 0.059880 10 0 92 23 no 1.000000 2 1.000000 NA 1.000000 69.200000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 1507 1541 -1 35 LSC 0.028571 1 0 28 105 no 1.000000 2 1.000000 NA 1.000000 56.000000 matK gene matK matK 1817 3412 -1 1596 LSC 0.020755 33 6 39 31 no 1.000000 2 1.000000 NA 0.996241 58.200000 IGS_005 igs matK|trnK-UUU matK-trnK-UUU 3413 4062 0 650 LSC 0.021909 14 11 13 39 no 1.000000 2 1.000000 NA 0.983077 58.900000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 4063 4099 -1 37 LSC 0.000000 0 0 72 2 no 0.000000 1 0.000000 NA 1.000000 18.900000 IGS_006 igs trnK-UUU|trnQ-UUG trnK-UUU-trnQ-UUG 4100 4841 0 742 LSC 0.063444 42 80 109 14 yes 1.000000 2 1.000000 NA 0.892183 77.600000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 4842 4913 -1 72 LSC 0.013889 1 0 44 15 no 1.000000 2 1.000000 NA 1.000000 46.600000 IGS_007 igs trnQ-UUG|psbK trnQ-UUG-psbK 4914 5224 0 311 LSC 0.056738 16 29 57 28 no 1.000000 2 1.000000 NA 0.906752 72.400000 psbK gene psbK psbK 5225 5413 1 189 LSC 0.015873 3 0 7 4 no 1.000000 2 1.000000 NA 1.000000 46.900000 IGS_008 igs psbK|psbI psbK-psbI 5414 5812 0 399 LSC 0.038961 15 14 61 45 no 1.000000 2 1.000000 NA 0.964912 68.600000 psbI gene psbI psbI 5813 5923 1 111 LSC 0.027027 3 0 85 44 no 1.000000 2 1.000000 NA 1.000000 56.300000 IGS_009 igs psbI|trnS-GCU psbI-trnS-GCU 5924 5999 0 76 LSC 0.041096 3 3 45 38 no 1.000000 2 1.000000 NA 0.960526 67.600000 trnS-GCU tRNA trnS-GCU trnS-GCU 6000 6087 -1 88 LSC 0.022727 2 0 0 33 no 1.000000 2 1.000000 NA 1.000000 50.600000 IGS_010 igs trnS-GCU|trnG-UCC trnS-GCU-trnG-UCC 6088 6531 0 444 LSC 0.111111 44 48 26 45 yes 1.000000 2 1.000000 NA 0.891892 80.500000 trnG-UCC_part1 tRNA trnG-UCC trnG-UCC 6532 6554 1 23 LSC 0.000000 0 0 14 22 no 0.000000 1 0.000000 NA 1.000000 19.800000 trnG-UCC_part2 tRNA trnG-UCC trnG-UCC 7225 7272 1 48 LSC 0.000000 0 0 139 16 no 0.000000 1 0.000000 NA 1.000000 20.000000 IGS_013 igs trnG-UCC|trnR-UCU trnG-UCC-trnR-UCU 7273 7412 0 140 LSC 0.092857 13 0 187 3 no 1.000000 2 1.000000 NA 1.000000 71.800000 trnR-UCU tRNA trnR-UCU trnR-UCU 7413 7484 1 72 LSC 0.027778 2 0 4 51 no 1.000000 2 1.000000 NA 1.000000 53.800000 IGS_014 igs trnR-UCU|atpA trnR-UCU-atpA 7485 7539 0 55 LSC 0.018182 1 0 52 17 no 1.000000 2 1.000000 NA 1.000000 49.200000 atpA gene atpA atpA 7540 9063 -1 1524 LSC 0.009843 15 0 3 53 no 1.000000 2 1.000000 NA 1.000000 49.600000 IGS_015 igs atpA|atpF atpA-atpF 9064 9143 0 80 LSC 0.029412 2 12 47 38 no 1.000000 2 1.000000 NA 0.850000 58.700000 atpF gene atpF atpF 9144 10426 -1 1283 LSC 0.017586 22 32 13 11 no 1.000000 2 1.000000 NA 0.975058 57.000000 IGS_016 igs atpF|atpH atpF-atpH 10427 10750 0 324 LSC 0.029316 9 17 71 51 no 1.000000 2 1.000000 NA 0.947531 63.300000 atpH gene atpH atpH 10751 10996 -1 246 LSC 0.016260 4 0 64 55 no 1.000000 2 1.000000 NA 1.000000 51.000000 IGS_017 igs atpH|atpI atpH-atpI 10997 11817 0 821 LSC 0.035044 28 22 59 7 no 1.000000 2 1.000000 NA 0.973203 66.900000 atpI gene atpI atpI 11818 12558 -1 741 LSC 0.013495 10 0 35 15 no 1.000000 2 1.000000 NA 1.000000 52.600000 IGS_018 igs atpI|rps2 atpI-rps2 12559 12771 0 213 LSC 0.023474 5 0 6 14 no 1.000000 2 1.000000 NA 1.000000 51.400000 rps2 gene rps2 rps2 12772 13482 -1 711 LSC 0.008439 6 0 18 281 no 1.000000 2 1.000000 NA 1.000000 50.000000 IGS_019 igs rps2|rpoC2 rps2-rpoC2 13483 13728 0 246 LSC 0.000000 0 28 163 35 no 1.000000 2 1.000000 NA 0.886179 43.200000 rpoC2 gene rpoC2 rpoC2 13729 17901 -1 4173 LSC 0.017088 71 18 300 16 no 1.000000 2 1.000000 NA 0.995687 50.200000 IGS_020 igs rpoC2|rpoC1 rpoC2-rpoC1 17902 17979 0 78 LSC 0.038462 3 0 188 21 no 1.000000 2 1.000000 NA 1.000000 61.200000 rpoC1 gene rpoC1 rpoC1 17980 20730 -1 2751 LSC 0.013813 38 0 25 150 no 1.000000 2 1.000000 NA 1.000000 51.000000 IGS_021 igs rpoC1|rpoB rpoC1-rpoB 20731 20756 0 26 LSC 0.000000 0 0 241 124 no 0.000000 1 0.000000 NA 1.000000 28.000000 rpoB gene rpoB rpoB 20757 24011 -1 3255 LSC 0.013518 44 0 267 35 no 1.000000 2 1.000000 NA 1.000000 50.600000 IGS_022 igs rpoB|trnC-GCA rpoB-trnC-GCA 24012 24788 0 777 LSC 0.030888 24 0 92 126 no 1.000000 2 1.000000 NA 1.000000 68.400000 trnC-GCA tRNA trnC-GCA trnC-GCA 24789 24859 1 71 LSC 0.000000 0 0 60 55 no 0.000000 1 0.000000 NA 1.000000 22.900000 IGS_023 igs trnC-GCA|petN trnC-GCA-petN 24860 25551 0 692 LSC 0.042320 27 54 131 193 yes 1.000000 2 1.000000 NA 0.921965 81.600000 petN gene petN petN 25552 25641 1 90 LSC 0.000000 0 0 18 103 no 0.000000 1 0.000000 NA 1.000000 20.100000 IGS_024 igs petN|psbM petN-psbM 25642 26640 0 999 LSC 0.027505 14 490 108 244 no 1.000000 2 1.000000 NA 0.509510 59.800000 psbM gene psbM psbM 26641 26745 -1 105 LSC 0.000000 0 0 7 139 no 0.000000 1 0.000000 NA 1.000000 19.300000 IGS_025 igs psbM|trnD-GUC psbM-trnD-GUC 26746 27259 0 514 LSC 0.043103 15 166 112 32 no 1.000000 2 1.000000 NA 0.677043 64.600000 trnD-GUC tRNA trnD-GUC trnD-GUC 27260 27333 -1 74 LSC 0.013514 1 0 57 33 no 1.000000 2 1.000000 NA 1.000000 47.700000 IGS_026 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 27334 27455 0 122 LSC 0.037383 4 15 41 93 no 1.000000 2 1.000000 NA 0.877049 64.300000 trnY-GUA tRNA trnY-GUA trnY-GUA 27456 27539 -1 84 LSC 0.000000 0 0 18 9 no 0.000000 1 0.000000 NA 1.000000 19.400000 IGS_027 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 27540 27594 0 55 LSC 0.127273 7 0 102 89 yes 1.000000 2 1.000000 NA 1.000000 79.200000 trnE-UUC tRNA trnE-UUC trnE-UUC 27595 27667 -1 73 LSC 0.000000 0 0 5 16 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_028 igs trnE-UUC|trnT-GGU trnE-UUC-trnT-GGU 27668 28197 0 530 LSC 0.031579 15 55 78 12 no 1.000000 2 1.000000 NA 0.896226 64.300000 trnT-GGU tRNA trnT-GGU trnT-GGU 28198 28269 1 72 LSC 0.027778 2 0 32 62 no 1.000000 2 1.000000 NA 1.000000 55.900000 IGS_029 igs trnT-GGU|psbD trnT-GGU-psbD 28270 29428 0 1159 LSC 0.021858 24 61 45 161 no 1.000000 2 1.000000 NA 0.947368 64.300000 psbD gene psbD psbD 29429 30490 1 1062 LSC 0.007533 8 0 86 234 no 1.000000 2 1.000000 NA 1.000000 54.500000 psbC gene psbC psbC 30438 31859 1 1422 LSC 0.006329 9 0 292 97 no 1.000000 2 1.000000 NA 1.000000 54.700000 IGS_031 igs psbC|trnS-UGA psbC-trnS-UGA 31860 32116 0 257 LSC 0.025641 6 23 155 141 no 1.000000 2 1.000000 NA 0.910506 66.300000 trnS-UGA tRNA trnS-UGA trnS-UGA 32117 32209 -1 93 LSC 0.000000 0 0 6 48 no 0.000000 1 0.000000 NA 1.000000 19.200000 IGS_032 igs trnS-UGA|psbZ trnS-UGA-psbZ 32210 32522 0 313 LSC 0.041522 12 24 99 194 no 1.000000 2 1.000000 NA 0.923323 72.800000 psbZ gene psbZ psbZ 32523 32711 1 189 LSC 0.000000 0 0 56 5 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_033 igs psbZ|trnG-GCC psbZ-trnG-GCC 32712 32956 0 245 LSC 0.068376 16 11 245 35 no 1.000000 2 1.000000 NA 0.955102 75.100000 trnG-GCC tRNA trnG-GCC trnG-GCC 32957 33027 1 71 LSC 0.014085 1 0 12 13 no 1.000000 2 1.000000 NA 1.000000 46.500000 IGS_034 igs trnG-GCC|trnfM-CAU trnG-GCC-trnfM-CAU 33028 33202 0 175 LSC 0.024096 4 9 35 24 no 1.000000 2 1.000000 NA 0.948571 57.800000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 33203 33276 -1 74 LSC 0.013514 1 0 116 1 no 1.000000 2 1.000000 NA 1.000000 45.300000 IGS_035 igs trnfM-CAU|rps14 trnfM-CAU-rps14 33277 33427 0 151 LSC 0.020979 3 8 49 225 no 1.000000 2 1.000000 NA 0.947020 57.900000 rps14 gene rps14 rps14 33428 33730 -1 303 LSC 0.003300 1 0 37 3 no 1.000000 2 1.000000 NA 1.000000 39.700000 IGS_036 igs rps14|psaB rps14-psaB 33731 33858 0 128 LSC 0.023438 3 0 77 300 no 1.000000 2 1.000000 NA 1.000000 56.800000 psaB gene psaB psaB 33859 36063 -1 2205 LSC 0.005896 13 0 66 181 no 1.000000 2 1.000000 NA 1.000000 50.600000 IGS_037 igs psaB|psaA psaB-psaA 36064 36088 0 25 LSC 0.000000 0 1 182 156 no 1.000000 2 1.000000 NA 0.960000 53.100000 psaA gene psaA psaA 36089 38341 -1 2253 LSC 0.009765 22 0 207 33 no 1.000000 2 1.000000 NA 1.000000 50.300000 IGS_038 igs psaA|ycf3 psaA-ycf3 38342 39109 0 768 LSC 0.039890 29 41 38 52 no 1.000000 2 1.000000 NA 0.946615 74.000000 ycf3 gene ycf3 ycf3 39110 41059 -1 1950 LSC 0.014644 28 38 84 79 no 1.000000 2 1.000000 NA 0.980513 59.000000 IGS_039 igs ycf3|trnS-GGA ycf3-trnS-GGA 41060 41472 0 413 LSC 0.029491 11 40 86 15 no 1.000000 2 1.000000 NA 0.903148 61.100000 trnS-GGA tRNA trnS-GGA trnS-GGA 41473 41559 1 87 LSC 0.022989 2 0 133 19 no 1.000000 2 1.000000 NA 1.000000 52.100000 IGS_040 igs trnS-GGA|rps4 trnS-GGA-rps4 41560 41872 0 313 LSC 0.026578 8 12 36 128 no 1.000000 2 1.000000 NA 0.961661 59.300000 rps4 gene rps4 rps4 41873 42484 -1 612 LSC 0.011438 7 0 31 22 no 1.000000 2 1.000000 NA 1.000000 52.000000 IGS_041 igs rps4|trnT-UGU rps4-trnT-UGU 42485 42801 0 317 LSC 0.035971 10 39 113 4 no 1.000000 2 1.000000 NA 0.876972 61.100000 trnT-UGU tRNA trnT-UGU trnT-UGU 42802 42874 -1 73 LSC 0.013699 1 0 11 33 no 1.000000 2 1.000000 NA 1.000000 46.200000 IGS_042 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 42875 43504 0 630 LSC 0.055556 32 54 68 177 yes 1.000000 2 1.000000 NA 0.914286 81.500000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 43505 43539 1 35 LSC 0.000000 0 0 13 142 no 0.000000 1 0.000000 NA 1.000000 19.700000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 43882 43931 1 50 LSC 0.000000 0 0 113 12 no 0.000000 1 0.000000 NA 1.000000 19.700000 IGS_045 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 43932 44223 0 292 LSC 0.049808 13 31 163 97 yes 1.000000 2 1.000000 NA 0.893836 76.000000 trnF-GAA tRNA trnF-GAA trnF-GAA 44224 44296 1 73 LSC 0.000000 0 0 21 24 no 0.000000 1 0.000000 NA 1.000000 20.300000 IGS_046 igs trnF-GAA|trnV-UAC trnF-GAA-trnV-UAC 44297 45030 0 734 LSC 0.046283 33 21 94 126 yes 1.000000 2 1.000000 NA 0.971390 80.000000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 45031 45065 -1 35 LSC 0.000000 0 0 5 91 no 0.000000 1 0.000000 NA 1.000000 19.100000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 45652 45689 -1 38 LSC 0.000000 0 0 118 29 no 0.000000 1 0.000000 NA 1.000000 20.900000 IGS_049 igs trnV-UAC|trnM-CAU trnV-UAC-trnM-CAU 45690 45861 0 172 LSC 0.025157 4 13 156 87 no 1.000000 2 1.000000 NA 0.924419 62.400000 trnM-CAU tRNA trnM-CAU trnM-CAU 45862 45934 1 73 LSC 0.000000 0 0 31 14 no 0.000000 1 0.000000 NA 1.000000 19.800000 IGS_050 igs trnM-CAU|atpE trnM-CAU-atpE 45935 46147 0 213 LSC 0.079812 17 0 104 63 no 1.000000 2 1.000000 NA 1.000000 74.700000 atpE gene atpE atpE 46148 46546 -1 399 LSC 0.020050 8 0 8 5 no 1.000000 2 1.000000 NA 1.000000 51.500000 atpB gene atpB atpB 46543 48051 -1 1509 LSC 0.012641 19 6 13 17 no 1.000000 2 1.000000 NA 0.996024 52.400000 IGS_052 igs atpB|rbcL atpB-rbcL 48052 48654 0 603 LSC 0.035775 21 16 55 98 no 1.000000 2 1.000000 NA 0.973466 70.900000 rbcL gene rbcL rbcL 48655 50112 1 1458 LSC 0.008230 12 0 155 9 no 1.000000 2 1.000000 NA 1.000000 49.200000 IGS_053 igs rbcL|accD rbcL-accD 50113 50686 0 574 LSC 0.040153 21 51 66 44 no 1.000000 2 1.000000 NA 0.911150 72.900000 accD gene accD accD 50687 52108 1 1422 LSC 0.012048 16 94 7 51 no 1.000000 2 1.000000 NA 0.933896 55.500000 IGS_054 igs accD|psaI accD-psaI 52109 52256 0 148 LSC 0.088435 13 1 50 178 no 1.000000 2 1.000000 NA 0.993243 75.400000 psaI gene psaI psaI 52257 52367 1 111 LSC 0.000000 0 0 2 67 no 0.000000 1 0.000000 NA 1.000000 18.900000 IGS_055 igs psaI|ycf4 psaI-ycf4 52368 52705 0 338 LSC 0.032362 10 29 113 44 no 1.000000 2 1.000000 NA 0.914201 63.700000 ycf4 gene ycf4 ycf4 52706 53260 1 555 LSC 0.016216 9 0 1 41 no 1.000000 2 1.000000 NA 1.000000 52.200000 IGS_056 igs ycf4|cemA ycf4-cemA 53261 53616 0 356 LSC 0.036254 12 25 67 24 no 1.000000 2 1.000000 NA 0.929775 65.300000 cemA gene cemA cemA 53617 54303 1 687 LSC 0.017467 12 0 30 6 no 1.000000 2 1.000000 NA 1.000000 54.200000 IGS_057 igs cemA|petA cemA-petA 54304 54518 0 215 LSC 0.031088 6 22 50 9 no 1.000000 2 1.000000 NA 0.897674 59.000000 petA gene petA petA 54519 55478 1 960 LSC 0.013542 13 0 131 38 no 1.000000 2 1.000000 NA 1.000000 54.400000 IGS_058 igs petA|psbJ petA-psbJ 55479 55941 0 463 LSC 0.055172 24 28 62 73 yes 1.000000 2 1.000000 NA 0.939525 79.100000 psbJ gene psbJ psbJ 55942 56064 -1 123 LSC 0.008130 1 0 9 52 no 1.000000 2 1.000000 NA 1.000000 42.800000 IGS_059 igs psbJ|psbL psbJ-psbL 56065 56204 0 140 LSC 0.035714 5 0 49 33 no 1.000000 2 1.000000 NA 1.000000 60.500000 psbL gene psbL psbL 56205 56321 -1 117 LSC 0.034188 4 0 4 21 no 1.000000 2 1.000000 NA 1.000000 57.500000 IGS_060 igs psbL|psbF psbL-psbF 56322 56344 0 23 LSC 0.043478 1 0 14 159 no 1.000000 2 1.000000 NA 1.000000 63.500000 psbF gene psbF psbF 56345 56464 -1 120 LSC 0.000000 0 0 1 39 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_061 igs psbF|psbE psbF-psbE 56465 56473 0 9 LSC 0.000000 0 0 121 30 no 0.000000 1 0.000000 NA 1.000000 21.000000 psbE gene psbE psbE 56474 56725 -1 252 LSC 0.015873 4 0 130 37 no 1.000000 2 1.000000 NA 1.000000 49.400000 IGS_062 igs psbE|petL psbE-petL 56726 57460 0 735 LSC 0.022599 16 27 116 3 no 1.000000 2 1.000000 NA 0.963265 60.400000 petL gene petL petL 57461 57556 1 96 LSC 0.010417 1 0 5 1 no 1.000000 2 1.000000 NA 1.000000 43.600000 IGS_063 igs petL|petG petL-petG 57557 57740 0 184 LSC 0.028090 5 6 92 134 no 1.000000 2 1.000000 NA 0.967391 63.600000 petG gene petG petG 57741 57854 1 114 LSC 0.000000 0 0 17 20 no 0.000000 1 0.000000 NA 1.000000 20.000000 IGS_064 igs petG|trnW-CCA petG-trnW-CCA 57855 57979 0 125 LSC 0.016000 2 0 131 31 no 1.000000 2 1.000000 NA 1.000000 49.000000 trnW-CCA tRNA trnW-CCA trnW-CCA 57980 58053 -1 74 LSC 0.013514 1 0 68 39 no 1.000000 2 1.000000 NA 1.000000 48.200000 IGS_065 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 58054 58106 0 53 LSC 0.100000 4 13 42 85 no 1.000000 2 1.000000 NA 0.754717 71.900000 trnP-UGG tRNA trnP-UGG trnP-UGG 58107 58180 -1 74 LSC 0.000000 0 0 6 11 no 0.000000 1 0.000000 NA 1.000000 19.200000 IGS_066 igs trnP-UGG|psaJ trnP-UGG-psaJ 58181 58435 0 255 LSC 0.090551 23 1 80 21 no 1.000000 2 1.000000 NA 0.996078 73.200000 psaJ gene psaJ psaJ 58436 58573 1 138 LSC 0.021739 3 0 18 50 no 1.000000 2 1.000000 NA 1.000000 51.300000 IGS_067 igs psaJ|rps18 psaJ-rps18 58574 59284 0 711 LSC 0.037143 26 11 0 9 no 1.000000 2 1.000000 NA 0.984529 66.500000 rps18 gene rps18 rps18 59285 59602 1 318 LSC 0.006289 2 0 70 4 no 1.000000 2 1.000000 NA 1.000000 41.800000 IGS_068 igs rps18|rpl20 rps18-rpl20 59603 59755 0 153 LSC 0.052288 8 0 297 83 no 1.000000 2 1.000000 NA 1.000000 72.800000 rpl20 gene rpl20 rpl20 59756 60124 -1 369 LSC 0.021680 8 0 14 35 no 1.000000 2 1.000000 NA 1.000000 52.500000 IGS_069 igs rpl20|rps12 rpl20-rps12 60125 60908 0 784 LSC 0.021879 17 7 114 48 no 1.000000 2 1.000000 NA 0.991071 60.800000 rps12_part1 gene rps12 rps12 60909 61022 -1 114 LSC 0.008772 1 0 50 60 no 1.000000 2 1.000000 NA 1.000000 46.300000 IGS_070 igs rps12|clpP rps12-clpP 61023 61159 0 137 LSC 0.058394 8 0 65 283 no 1.000000 2 1.000000 NA 1.000000 72.200000 clpP gene clpP clpP 61160 63068 -1 1909 LSC 0.015450 29 32 20 29 no 1.000000 2 1.000000 NA 0.983237 54.900000 IGS_071 igs clpP|psbB clpP-psbB 63069 63499 0 431 LSC 0.034146 14 21 191 30 no 1.000000 2 1.000000 NA 0.951276 66.600000 psbB gene psbB psbB 63500 65026 1 1527 LSC 0.014407 22 0 15 45 no 1.000000 2 1.000000 NA 1.000000 53.100000 IGS_072 igs psbB|psbT psbB-psbT 65027 65208 0 182 LSC 0.032967 6 0 135 50 no 1.000000 2 1.000000 NA 1.000000 60.200000 psbT gene psbT psbT 65209 65316 1 108 LSC 0.009259 1 0 26 149 no 1.000000 2 1.000000 NA 1.000000 44.800000 IGS_073 igs psbT|psbN psbT-psbN 65317 65367 0 51 LSC 0.000000 0 0 57 98 no 0.000000 1 0.000000 NA 1.000000 23.000000 psbN gene psbN psbN 65368 65499 -1 132 LSC 0.007576 1 0 108 24 no 1.000000 2 1.000000 NA 1.000000 43.700000 IGS_074 igs psbN|psbH psbN-psbH 65500 65609 0 110 LSC 0.027778 3 2 33 127 no 1.000000 2 1.000000 NA 0.981818 57.600000 psbH gene psbH psbH 65610 65822 1 213 LSC 0.004695 1 0 63 40 no 1.000000 2 1.000000 NA 1.000000 43.200000 IGS_075 igs psbH|petB psbH-petB 65823 65952 0 130 LSC 0.050847 6 12 85 19 no 1.000000 2 1.000000 NA 0.907692 70.800000 petB gene petB petB 65953 67273 1 1321 LSC 0.014493 19 10 6 17 no 1.000000 2 1.000000 NA 0.992430 53.300000 IGS_076 igs petB|petD petB-petD 67274 67473 0 200 LSC 0.020725 4 7 276 58 no 1.000000 2 1.000000 NA 0.965000 57.100000 petD gene petD petD 67474 68704 1 1231 LSC 0.028736 35 13 63 16 no 1.000000 2 1.000000 NA 0.989439 62.500000 IGS_077 igs petD|rpoA petD-rpoA 68705 68878 0 174 LSC 0.047337 8 5 185 0 no 1.000000 2 1.000000 NA 0.971264 67.300000 rpoA gene rpoA rpoA 68879 69871 -1 993 LSC 0.013416 13 24 0 16 no 1.000000 2 1.000000 NA 0.975831 53.800000 IGS_078 igs rpoA|rps11 rpoA-rps11 69872 69940 0 69 LSC 0.014493 1 0 98 300 no 1.000000 2 1.000000 NA 1.000000 53.200000 rps11 gene rps11 rps11 69941 70357 -1 417 LSC 0.009592 4 0 52 40 no 1.000000 2 1.000000 NA 1.000000 48.500000 IGS_079 igs rps11|rpl36 rps11-rpl36 70358 70457 0 100 LSC 0.020000 2 0 40 130 no 1.000000 2 1.000000 NA 1.000000 52.000000 rpl36 gene rpl36 rpl36 70458 70571 -1 114 LSC 0.000000 0 0 1 16 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_080 igs rpl36|rps8 rpl36-rps8 70572 70756 0 185 LSC 0.050279 9 6 115 89 no 1.000000 2 1.000000 NA 0.967568 75.900000 rps8 gene rps8 rps8 70757 71161 -1 405 LSC 0.017284 7 0 26 53 no 1.000000 2 1.000000 NA 1.000000 51.600000 IGS_081 igs rps8|rpl14 rps8-rpl14 71162 71296 0 135 LSC 0.029851 4 1 5 50 no 1.000000 2 1.000000 NA 0.992593 55.700000 rpl14 gene rpl14 rpl14 71297 71665 -1 369 LSC 0.013550 5 0 11 64 no 1.000000 2 1.000000 NA 1.000000 47.600000 IGS_082 igs rpl14|rpl16 rpl14-rpl16 71666 71791 0 126 LSC 0.071429 9 0 72 33 no 1.000000 2 1.000000 NA 1.000000 71.400000 rpl16 gene rpl16 rpl16 71792 72942 -1 1151 LSC 0.032202 37 2 2 49 no 1.000000 2 1.000000 NA 0.998262 62.600000 IGS_083 igs rpl16|rpl22 rpl16-rpl22 72943 73705 0 763 LSC 0.028112 21 16 31 19 no 1.000000 2 1.000000 NA 0.979030 63.300000 rpl22 gene rpl22 rpl22 73706 74191 -1 486 LSC 0.018519 9 0 5 40 no 1.000000 2 1.000000 NA 1.000000 52.400000 IGS_084 igs rpl22|rps19 rpl22-rps19 74192 74249 0 58 LSC 0.017241 1 0 68 56 no 1.000000 2 1.000000 NA 1.000000 51.600000 rps19 gene rps19 rps19 74250 74528 -1 279 IRb 0.003584 1 0 17 47 no 1.000000 2 1.000000 NA 1.000000 40.800000 IGS_085 igs rps19|rpl2 rps19-rpl2 74529 74580 0 52 IRb 0.020408 1 3 222 222 no 1.000000 2 1.000000 NA 0.942308 68.700000 rpl2 gene rpl2 rpl2 74581 76045 -1 1465 IRb 0.002761 4 16 4 300 no 1.000000 2 1.000000 NA 0.989078 46.700000 IGS_086 igs rpl2|rpl23 rpl2-rpl23 76046 76063 0 18 IRb 0.000000 0 0 74 300 no 0.000000 1 0.000000 NA 1.000000 24.300000 rpl23 gene rpl23 rpl23 76064 76345 -1 282 IRb 0.000000 0 0 92 300 no 0.000000 1 0.000000 NA 1.000000 25.700000 IGS_087 igs rpl23|trnI-CAU rpl23-trnI-CAU 76346 76492 0 147 IRb 0.000000 0 0 300 221 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-CAU tRNA trnI-CAU trnI-CAU 76493 76566 -1 74 IRb 0.000000 0 0 300 147 no 0.000000 1 0.000000 NA 1.000000 29.800000 IGS_088 igs trnI-CAU|ycf2 trnI-CAU-ycf2 76567 76654 0 88 IRb 0.000000 0 20 300 59 no 1.000000 2 1.000000 NA 0.772727 41.800000 ycf2 gene ycf2 ycf2 76655 83083 1 6429 IRb 0.004113 26 108 300 141 no 1.000000 2 1.000000 NA 0.983201 52.100000 infA gene infA infA 77507 77680 -1 174 IRb 0.000000 0 0 232 214 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_090 igs infA|ycf15 infA-ycf15 77681 83212 0 5532 IRb 0.004082 22 143 300 12 no 1.000000 2 1.000000 NA 0.974150 43.200000 ycf15 gene ycf15 ycf15 83213 83329 1 117 IRb 0.066038 7 11 150 181 yes 1.000000 2 1.000000 NA 0.905983 82.300000 IGS_091 igs ycf15|trnL-CAA ycf15-trnL-CAA 83330 83543 0 214 IRb 0.005319 1 26 64 114 no 1.000000 2 1.000000 NA 0.878505 48.100000 trnL-CAA tRNA trnL-CAA trnL-CAA 83544 83624 -1 81 IRb 0.000000 0 0 32 33 no 0.000000 1 0.000000 NA 1.000000 21.100000 IGS_092 igs trnL-CAA|ndhB trnL-CAA-ndhB 83625 83828 0 204 IRb 0.004902 1 0 113 300 no 1.000000 2 1.000000 NA 1.000000 48.800000 ndhB gene ndhB ndhB 83829 85493 -1 1665 IRb 0.002421 4 13 170 118 no 1.000000 2 1.000000 NA 0.992192 54.400000 IGS_093 igs ndhB|rps7 ndhB-rps7 85494 85658 0 165 IRb 0.019231 3 9 300 300 no 1.000000 2 1.000000 NA 0.945455 68.100000 rps7 gene rps7 rps7 85659 86126 -1 468 IRb 0.000000 0 0 41 300 no 0.000000 1 0.000000 NA 1.000000 25.300000 IGS_094 igs rps7|rps12 rps7-rps12 86127 86733 0 607 IRb 0.000000 0 13 300 300 no 1.000000 2 1.000000 NA 0.978583 60.800000 rps12_part2 gene rps12 rps12 86734 86976 -1 243 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_095 igs rps12|trnV-GAC rps12-trnV-GAC 86977 88259 0 1283 IRb 0.015358 18 111 300 300 no 1.000000 2 1.000000 NA 0.913484 71.200000 trnV-GAC tRNA trnV-GAC trnV-GAC 88260 88331 1 72 IRb 0.000000 0 0 11 300 no 0.000000 1 0.000000 NA 1.000000 19.600000 IGS_096 igs trnV-GAC|rrn16 trnV-GAC-rrn16 88332 88549 0 218 IRb 0.000000 0 9 83 300 no 1.000000 2 1.000000 NA 0.958716 47.700000 rrn16 rRNA rrn16 rrn16 88550 90040 1 1491 IRb 0.002012 3 0 300 83 no 1.000000 2 1.000000 NA 1.000000 51.100000 IGS_097 igs rrn16|trnI-GAU rrn16-trnI-GAU 90041 90306 0 266 IRb 0.007843 2 11 75 269 no 1.000000 2 1.000000 NA 0.958647 51.600000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 90307 90343 1 37 IRb 0.000000 0 0 0 232 no 0.000000 1 0.000000 NA 1.000000 18.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 91165 91199 1 35 IRb 0.000000 0 0 130 150 no 0.000000 1 0.000000 NA 1.000000 28.500000 IGS_100 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 91200 91254 0 55 IRb 0.000000 0 0 165 95 no 0.000000 1 0.000000 NA 1.000000 25.900000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 91255 91292 1 38 IRb 0.000000 0 0 220 57 no 0.000000 1 0.000000 NA 1.000000 23.000000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 92123 92157 1 35 IRb 0.000000 0 0 25 149 no 0.000000 1 0.000000 NA 1.000000 20.600000 IGS_103 igs trnA-UGC|rrn23 trnA-UGC-rrn23 92158 92310 0 153 IRb 0.007042 1 11 60 105 no 1.000000 2 1.000000 NA 0.928105 50.200000 rrn23 rRNA rrn23 rrn23 92311 95126 1 2816 IRb 0.000710 2 0 3 43 no 1.000000 2 1.000000 NA 1.000000 41.600000 IGS_104 igs rrn23|rrn4.5 rrn23-rrn4.5 95127 95227 0 101 IRb 0.009901 1 0 300 127 no 1.000000 2 1.000000 NA 1.000000 52.700000 rrn4.5 rRNA rrn4.5 rrn4.5 95228 95330 1 103 IRb 0.000000 0 0 57 24 no 0.000000 1 0.000000 NA 1.000000 20.600000 IGS_105 igs rrn4.5|rrn5 rrn4.5-rrn5 95331 95517 0 187 IRb 0.164706 28 17 160 14 yes 1.000000 2 1.000000 NA 0.909091 77.200000 rrn5 rRNA rrn5 rrn5 95518 95638 1 121 IRb 0.008264 1 0 6 39 no 1.000000 2 1.000000 NA 1.000000 42.700000 IGS_106 igs rrn5|trnR-ACG rrn5-trnR-ACG 95639 95869 0 231 IRb 0.004630 1 15 106 57 no 1.000000 2 1.000000 NA 0.935065 48.800000 trnR-ACG tRNA trnR-ACG trnR-ACG 95870 95943 1 74 IRb 0.013514 1 0 191 71 no 1.000000 2 1.000000 NA 1.000000 50.600000 IGS_107 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 95944 96268 0 325 IRb 0.164835 45 52 16 174 yes 1.000000 2 1.000000 NA 0.840000 76.000000 trnN-GUU tRNA trnN-GUU trnN-GUU 96269 96340 -1 72 IRb 0.000000 0 0 56 102 no 0.000000 1 0.000000 NA 1.000000 22.900000 IGS_108 igs trnN-GUU|ndhF trnN-GUU-ndhF 96341 98877 0 2537 IRb 0.157588 379 132 128 55 yes 1.000000 2 1.000000 NA 0.947970 85.500000 ndhF gene ndhF ndhF 98878 98964 -1 87 SSC 0.036145 3 4 46 17 no 1.000000 2 1.000000 NA 0.954023 63.800000 IGS_109 igs ndhF|rpl32 ndhF-rpl32 98965 100049 0 1085 SSC 0.048689 52 17 11 44 no 1.000000 2 1.000000 NA 0.984332 74.000000 rpl32 gene rpl32 rpl32 100050 100307 1 258 SSC 0.008130 2 12 1 56 no 1.000000 2 1.000000 NA 0.953488 46.700000 IGS_110 igs rpl32|trnL-UAG rpl32-trnL-UAG 100308 100709 0 402 SSC 0.030075 12 3 117 48 no 1.000000 2 1.000000 NA 0.992537 61.200000 trnL-UAG tRNA trnL-UAG trnL-UAG 100710 100789 1 80 SSC 0.012500 1 0 68 62 no 1.000000 2 1.000000 NA 1.000000 49.300000 IGS_111 igs trnL-UAG|ccsA trnL-UAG-ccsA 100790 100875 0 86 SSC 0.011628 1 0 31 14 no 1.000000 2 1.000000 NA 1.000000 45.200000 ccsA gene ccsA ccsA 100876 101853 1 978 SSC 0.021472 21 0 23 128 no 1.000000 2 1.000000 NA 1.000000 57.800000 IGS_112 igs ccsA|ndhD ccsA-ndhD 101854 102877 0 1024 SSC 0.025743 26 14 9 1 no 1.000000 2 1.000000 NA 0.986328 59.900000 ndhD gene ndhD ndhD 102878 103204 -1 327 SSC 0.015291 5 0 4 1 no 1.000000 2 1.000000 NA 1.000000 46.900000 IGS_113 igs ndhD|psaC ndhD-psaC 103205 103350 0 146 SSC 0.028571 4 6 2 189 no 1.000000 2 1.000000 NA 0.958904 57.900000 psaC gene psaC psaC 103351 103596 -1 246 SSC 0.004065 1 0 22 2 no 1.000000 2 1.000000 NA 1.000000 40.000000 IGS_114 igs psaC|ndhE psaC-ndhE 103597 103831 0 235 SSC 0.065728 14 22 56 0 no 1.000000 2 1.000000 NA 0.906383 71.100000 ndhE gene ndhE ndhE 103832 103906 -1 75 SSC 0.160000 12 0 3 7 no 1.000000 2 1.000000 NA 1.000000 72.700000 ndhA gene ndhA ndhA 103867 105171 -1 1305 SSC 0.027799 36 10 4 9 yes 1.000000 2 1.000000 NA 0.992337 60.800000 IGS_116 igs ndhA|ndhH ndhA-ndhH 105172 106150 0 979 SSC 0.017798 16 80 62 26 no 1.000000 2 1.000000 NA 0.918284 59.700000 ndhH gene ndhH ndhH 106151 106267 -1 117 SSC 0.017094 2 0 43 55 no 1.000000 2 1.000000 NA 1.000000 50.600000 IGS_117 igs ndhH|rps15 ndhH-rps15 106268 106378 0 111 SSC 0.045045 5 0 11 65 no 1.000000 2 1.000000 NA 1.000000 64.200000 rps15 gene rps15 rps15 106379 106642 -1 264 SSC 0.022727 6 0 2 77 no 1.000000 2 1.000000 NA 1.000000 50.700000 IGS_118 igs rps15|ycf1 rps15-ycf1 106643 106789 0 147 SSC 0.013605 2 0 12 0 no 1.000000 2 1.000000 NA 1.000000 45.300000 ycf1 gene ycf1 ycf1 106790 111994 -1 5205 SSC 0.027053 140 30 44 193 yes 1.000000 2 1.000000 NA 0.994236 56.900000 IGS_119 igs ycf1|trnN-GUU ycf1-trnN-GUU 111995 112325 0 331 IRa 0.027607 9 5 168 128 no 1.000000 2 1.000000 NA 0.984894 65.000000 trnN-GUU tRNA trnN-GUU trnN-GUU 112326 112397 1 72 IRa 0.000000 0 0 102 56 no 0.000000 1 0.000000 NA 1.000000 22.900000 IGS_120 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 112398 112722 0 325 IRa 0.164835 45 52 174 16 yes 1.000000 2 1.000000 NA 0.840000 76.000000 trnR-ACG tRNA trnR-ACG trnR-ACG 112723 112796 -1 74 IRa 0.013514 1 0 59 191 no 1.000000 2 1.000000 NA 1.000000 49.700000 IGS_121 igs trnR-ACG|rrn5 trnR-ACG-rrn5 112797 113027 0 231 IRa 0.004630 1 15 57 106 no 1.000000 2 1.000000 NA 0.935065 48.800000 rrn5 rRNA rrn5 rrn5 113028 113148 -1 121 IRa 0.008264 1 0 39 6 no 1.000000 2 1.000000 NA 1.000000 42.700000 IGS_122 igs rrn5|rrn4.5 rrn5-rrn4.5 113149 113335 0 187 IRa 0.164706 28 17 14 160 yes 1.000000 2 1.000000 NA 0.909091 77.200000 rrn4.5 rRNA rrn4.5 rrn4.5 113336 113438 -1 103 IRa 0.000000 0 0 24 57 no 0.000000 1 0.000000 NA 1.000000 20.600000 IGS_123 igs rrn4.5|rrn23 rrn4.5-rrn23 113439 113539 0 101 IRa 0.009901 1 0 127 300 no 1.000000 2 1.000000 NA 1.000000 52.700000 rrn23 rRNA rrn23 rrn23 113540 116355 -1 2816 IRa 0.000710 2 0 43 3 no 1.000000 2 1.000000 NA 1.000000 41.600000 IGS_124 igs rrn23|trnA-UGC rrn23-trnA-UGC 116356 116508 0 153 IRa 0.007042 1 11 105 60 no 1.000000 2 1.000000 NA 0.928105 50.200000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 116509 116543 -1 35 IRa 0.000000 0 0 149 25 no 0.000000 1 0.000000 NA 1.000000 20.600000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 117374 117411 -1 38 IRa 0.000000 0 0 57 221 no 0.000000 1 0.000000 NA 1.000000 23.000000 IGS_127 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 117412 117466 0 55 IRa 0.000000 0 0 95 166 no 0.000000 1 0.000000 NA 1.000000 25.900000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 117467 117501 -1 35 IRa 0.000000 0 0 150 131 no 0.000000 1 0.000000 NA 1.000000 28.600000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 118323 118359 -1 37 IRa 0.000000 0 0 232 0 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_130 igs trnI-GAU|rrn16 trnI-GAU-rrn16 118360 118625 0 266 IRa 0.007843 2 11 269 75 no 1.000000 2 1.000000 NA 0.958647 51.600000 rrn16 rRNA rrn16 rrn16 118626 120116 -1 1491 IRa 0.002012 3 0 83 300 no 1.000000 2 1.000000 NA 1.000000 51.100000 IGS_131 igs rrn16|trnV-GAC rrn16-trnV-GAC 120117 120334 0 218 IRa 0.000000 0 9 300 83 no 1.000000 2 1.000000 NA 0.958716 47.700000 trnV-GAC tRNA trnV-GAC trnV-GAC 120335 120406 -1 72 IRa 0.000000 0 0 300 11 no 0.000000 1 0.000000 NA 1.000000 19.600000 IGS_132 igs trnV-GAC|rps12 trnV-GAC-rps12 120407 121689 0 1283 IRa 0.015358 18 111 300 300 no 1.000000 2 1.000000 NA 0.913484 71.200000 rps12_part2 gene rps12 rps12 121690 121932 1 243 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_133 igs rps12|rps7 rps12-rps7 121933 122539 0 607 IRa 0.000000 0 13 300 300 no 1.000000 2 1.000000 NA 0.978583 60.800000 rps7 gene rps7 rps7 122540 123007 1 468 IRa 0.000000 0 0 300 41 no 0.000000 1 0.000000 NA 1.000000 25.300000 IGS_134 igs rps7|ndhB rps7-ndhB 123008 123172 0 165 IRa 0.019231 3 9 300 300 no 1.000000 2 1.000000 NA 0.945455 68.100000 ndhB gene ndhB ndhB 123173 124837 1 1665 IRa 0.002421 4 13 118 170 no 1.000000 2 1.000000 NA 0.992192 54.400000 IGS_135 igs ndhB|trnL-CAA ndhB-trnL-CAA 124838 125041 0 204 IRa 0.004902 1 0 300 113 no 1.000000 2 1.000000 NA 1.000000 48.800000 trnL-CAA tRNA trnL-CAA trnL-CAA 125042 125122 1 81 IRa 0.000000 0 0 33 32 no 0.000000 1 0.000000 NA 1.000000 21.100000 IGS_136 igs trnL-CAA|ycf15 trnL-CAA-ycf15 125123 125336 0 214 IRa 0.005319 1 26 114 64 no 1.000000 2 1.000000 NA 0.878505 48.100000 ycf15 gene ycf15 ycf15 125337 125453 -1 117 IRa 0.066038 7 11 181 150 yes 1.000000 2 1.000000 NA 0.905983 82.300000 IGS_137 igs ycf15|ycf2 ycf15-ycf2 125454 125582 0 129 IRa 0.000000 0 35 12 21 no 1.000000 2 1.000000 NA 0.728682 37.000000 ycf2 gene ycf2 ycf2 125583 132011 -1 6429 IRa 0.004113 26 108 141 300 no 1.000000 2 1.000000 NA 0.983201 52.100000 IGS_138 igs ycf2|trnI-CAU ycf2-trnI-CAU 132012 132099 0 88 IRa 0.000000 0 20 59 300 no 1.000000 2 1.000000 NA 0.772727 41.800000 trnI-CAU tRNA trnI-CAU trnI-CAU 132100 132173 1 74 IRa 0.000000 0 0 147 300 no 0.000000 1 0.000000 NA 1.000000 29.800000 IGS_139 igs trnI-CAU|rpl23 trnI-CAU-rpl23 132174 132320 0 147 IRa 0.000000 0 0 221 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 132321 132602 1 282 IRa 0.000000 0 0 300 92 no 0.000000 1 0.000000 NA 1.000000 25.700000 IGS_140 igs rpl23|rpl2 rpl23-rpl2 132603 132620 0 18 IRa 0.000000 0 0 300 74 no 0.000000 1 0.000000 NA 1.000000 24.300000 rpl2 gene rpl2 rpl2 132621 134085 1 1465 IRa 0.002761 4 16 300 4 no 1.000000 2 1.000000 NA 0.989078 46.700000 IGS_141 igs rpl2|trnH-GUG rpl2-trnH-GUG 134086 134336 0 251 IRa 0.004032 2628 3561 222 26 no 1.000000 2 1.000000 NA 0.973541 59.300000