feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH-GUG tRNA trnH-GUG trnH-GUG 24 98 -1 75 LSC 0.002667 1 0 2 64 no 0.100000 2 0.500000 0.002667 1.000000 23.600000 IGS_001 igs trnH-GUG|psbA trnH-GUG-psbA 99 493 0 395 LSC 0.016315 20 30 77 300 yes 0.800000 9 0.888889 0.014032 0.992405 60.800000 psbA gene psbA psbA 494 1555 -1 1062 LSC 0.001904 6 0 127 132 no 0.400000 6 0.666667 0.001904 1.000000 43.600000 IGS_002 igs psbA|trnK-UUU psbA-trnK-UUU 1556 1767 0 212 LSC 0.005975 4 0 300 163 no 0.200000 4 0.500000 0.005975 1.000000 39.800000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 1768 1802 -1 35 LSC 0.000000 0 0 46 128 no 0.000000 1 0.000000 0.000000 1.000000 22.200000 matK gene matK matK 2089 3603 -1 1515 LSC 0.002567 12 0 80 1 no 0.500000 7 0.714286 0.002567 1.000000 36.600000 IGS_005 igs matK|trnK-UUU matK-trnK-UUU 3604 4321 0 718 LSC 0.004085 9 1 119 78 no 0.600000 8 0.750000 0.004087 1.000000 45.700000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 4322 4358 -1 37 LSC 0.000000 0 0 258 41 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_006 igs trnK-UUU|rps16 trnK-UUU-rps16 4359 5274 0 916 LSC 0.009352 29 58 295 300 yes 0.600000 8 0.750000 0.009168 0.990175 65.200000 rps16 gene rps16 rps16 5275 6359 -1 1085 LSC 0.005694 18 0 48 237 no 0.600000 8 0.750000 0.005694 1.000000 44.500000 IGS_007 igs rps16|trnQ-UUG rps16-trnQ-UUG 6360 7831 0 1472 LSC 0.006748 33 5 58 131 no 0.800000 9 0.888889 0.006761 0.998641 50.600000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 7832 7903 -1 72 LSC 0.000000 0 0 61 59 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 IGS_008 igs trnQ-UUG|psbK trnQ-UUG-psbK 7904 8242 0 339 LSC 0.005900 5 0 133 226 no 0.100000 4 0.250000 0.005900 1.000000 35.900000 psbK gene psbK psbK 8243 8428 1 186 LSC 0.000000 0 0 198 40 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_009 igs psbK|psbI psbK-psbI 8429 8792 0 364 LSC 0.004884 4 0 300 300 no 0.000000 4 0.000000 0.004884 1.000000 38.700000 psbI gene psbI psbI 8793 8954 1 162 LSC 0.000000 0 5 16 149 no 0.100000 2 0.500000 0.000000 1.000000 25.600000 IGS_010 igs psbI|trnS-GCU psbI-trnS-GCU 8955 9013 0 59 LSC 0.000000 0 3 178 90 no 0.100000 2 0.500000 0.000000 1.000000 33.500000 trnS-GCU tRNA trnS-GCU trnS-GCU 9014 9101 -1 88 LSC 0.000000 0 0 237 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_011 igs trnS-GCU|trnG trnS-GCU-trnG 9102 9840 0 739 LSC 0.006676 13 36 300 44 no 0.400000 6 0.666667 0.006756 1.000000 46.900000 trnG_part1 tRNA trnG trnG 9841 9863 1 23 LSC 0.000000 0 0 40 21 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 trnG_part2 tRNA trnG trnG 10569 10616 1 48 LSC 0.000000 0 0 65 51 no 0.000000 1 0.000000 0.000000 1.000000 22.600000 IGS_014 igs trnG|trnR-UCU trnG-trnR-UCU 10617 10806 0 190 LSC 0.011345 5 2 113 169 no 0.200000 5 0.400000 0.011454 0.989474 40.400000 trnR-UCU tRNA trnR-UCU trnR-UCU 10807 10878 1 72 LSC 0.000000 0 0 26 97 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_015 igs trnR-UCU|atpA trnR-UCU-atpA 10879 11009 0 131 LSC 0.011026 3 0 98 124 no 0.200000 5 0.400000 0.011026 1.000000 37.700000 atpA gene atpA atpA 11010 12533 -1 1524 LSC 0.002508 11 0 22 209 no 0.300000 6 0.500000 0.002508 1.000000 34.300000 IGS_016 igs atpA|atpF atpA-atpF 12534 12591 0 58 LSC 0.000000 0 0 86 151 no 0.000000 1 0.000000 0.000000 1.000000 25.200000 atpF gene atpF atpF 12592 13857 -1 1266 LSC 0.001738 7 2 144 77 no 0.800000 9 0.888889 0.001739 0.999210 47.400000 IGS_017 igs atpF|atpH atpF-atpH 13858 14231 0 374 LSC 0.015508 17 7 300 300 yes 0.700000 8 0.875000 0.013177 0.983957 63.000000 atpH gene atpH atpH 14232 14477 -1 246 LSC 0.000813 1 0 20 300 no 0.100000 2 0.500000 0.000813 1.000000 23.000000 IGS_018 igs atpH|atpI atpH-atpI 14478 15618 0 1141 LSC 0.004947 14 252 266 300 no 0.400000 6 0.666667 0.002868 0.806310 51.900000 atpI gene atpI atpI 15619 16362 -1 744 LSC 0.001284 4 0 251 105 no 0.300000 5 0.600000 0.001284 1.000000 39.800000 IGS_019 igs atpI|rps2 atpI-rps2 16363 16589 0 227 LSC 0.010475 5 26 300 300 no 0.200000 4 0.500000 0.009610 1.000000 50.900000 rps2 gene rps2 rps2 16590 17300 -1 711 LSC 0.000281 1 0 14 21 no 0.100000 2 0.500000 0.000281 1.000000 28.200000 IGS_020 igs rps2|rpoC2 rps2-rpoC2 17301 17533 0 233 LSC 0.023690 13 11 300 3 yes 1.000000 10 1.000000 0.020871 0.995708 61.000000 rpoC2 gene rpoC2 rpoC2 17534 21697 -1 4164 LSC 0.002183 29 0 94 300 no 0.800000 9 0.888889 0.002183 1.000000 44.000000 IGS_021 igs rpoC2|rpoC1 rpoC2-rpoC1 21698 21862 0 165 LSC 0.001212 1 5 51 300 no 0.100000 2 0.500000 0.001250 1.000000 29.400000 rpoC1 gene rpoC1 rpoC1 21863 24690 -1 2828 LSC 0.001430 16 5 216 300 no 1.000000 10 1.000000 0.001431 1.000000 57.500000 IGS_022 igs rpoC1|rpoB rpoC1-rpoB 24691 24695 0 5 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpoB gene rpoB rpoB 24696 27908 -1 3213 LSC 0.001155 13 0 300 248 no 0.400000 7 0.571429 0.001155 1.000000 45.100000 IGS_023 igs rpoB|trnC-GCA rpoB-trnC-GCA 27909 29221 0 1313 LSC 0.005120 23 46 257 131 no 0.800000 9 0.888889 0.005190 0.982483 58.000000 trnC-GCA tRNA trnC-GCA trnC-GCA 29222 29302 1 81 LSC 0.000000 0 0 15 50 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_024 igs trnC-GCA|petN trnC-GCA-petN 29303 30161 0 859 LSC 0.009365 23 31 96 300 no 0.800000 9 0.888889 0.009400 0.976717 58.300000 petN gene petN petN 30162 30251 1 90 LSC 0.002222 1 0 2 300 no 0.100000 2 0.500000 0.002222 1.000000 23.200000 IGS_025 igs petN|psbM petN-psbM 30252 30744 0 493 LSC 0.001172 2 81 92 300 no 0.300000 6 0.500000 0.001129 0.969574 41.300000 psbM gene psbM psbM 30745 30849 -1 105 LSC 0.000000 0 0 57 248 no 0.000000 1 0.000000 0.000000 1.000000 23.000000 IGS_026 igs psbM|trnD-GUC psbM-trnD-GUC 30850 32004 0 1155 LSC 0.004104 15 65 162 102 no 1.000000 10 1.000000 0.004024 0.990476 60.300000 trnD-GUC tRNA trnD-GUC trnD-GUC 32005 32078 -1 74 LSC 0.000000 0 0 240 28 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_027 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 32079 32182 0 104 LSC 0.011966 3 0 300 300 no 0.000000 4 0.000000 0.011966 1.000000 42.700000 trnY-GUA tRNA trnY-GUA trnY-GUA 32183 32266 -1 84 LSC 0.000000 0 0 1 300 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_028 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 32267 32351 0 85 LSC 0.002353 1 21 85 261 no 0.100000 3 0.333333 0.003125 0.752941 27.300000 trnE-UUC tRNA trnE-UUC trnE-UUC 32352 32424 -1 73 LSC 0.000000 0 0 170 188 no 0.000000 1 0.000000 0.000000 1.000000 31.500000 IGS_029 igs trnE-UUC|trnT-GGU trnE-UUC-trnT-GGU 32425 33262 0 838 LSC 0.021864 73 60 243 106 yes 0.800000 9 0.888889 0.020185 0.966587 73.800000 trnT-GGU tRNA trnT-GGU trnT-GGU 33263 33334 1 72 LSC 0.000000 0 0 54 34 no 0.000000 1 0.000000 0.000000 1.000000 21.300000 trnM-CAU tRNA trnM-CAU trnM-CAU 33269 33327 1 59 LSC 0.000000 0 0 60 41 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_031 igs trnM-CAU|psbD trnM-CAU-psbD 33328 34756 0 1429 LSC 0.018591 68 364 119 26 yes 1.000000 10 1.000000 0.010005 0.941218 64.000000 psbD gene psbD psbD 34757 35818 1 1062 LSC 0.001381 4 0 163 117 no 0.200000 4 0.500000 0.001381 1.000000 38.600000 psbC gene psbC psbC 35766 37187 1 1422 LSC 0.001703 8 0 79 78 no 0.300000 5 0.600000 0.001703 1.000000 37.900000 IGS_033 igs psbC|trnS-UGA psbC-trnS-UGA 37188 37418 0 231 LSC 0.019865 14 5 300 269 yes 0.600000 8 0.750000 0.019594 0.991342 63.800000 trnS-UGA tRNA trnS-UGA trnS-UGA 37419 37510 -1 92 LSC 0.000000 0 0 18 177 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 IGS_034 igs trnS-UGA|lhbA trnS-UGA-lhbA 37511 37860 0 350 LSC 0.003746 5 0 110 259 no 0.300000 5 0.600000 0.003746 1.000000 37.100000 lhbA gene lhbA lhbA 37861 38049 1 189 LSC 0.000000 0 0 150 70 no 0.000000 1 0.000000 0.000000 1.000000 24.000000 IGS_035 igs lhbA|trnG-UCC lhbA-trnG-UCC 38050 38345 0 296 LSC 0.004354 4 4 300 180 no 0.500000 7 0.714286 0.004364 1.000000 46.900000 trnG-UCC tRNA trnG-UCC trnG-UCC 38346 38416 1 71 LSC 0.000000 0 0 221 109 no 0.000000 1 0.000000 0.000000 1.000000 26.900000 IGS_036 igs trnG-UCC|trnfM-CAU trnG-UCC-trnfM-CAU 38417 38587 0 171 LSC 0.003379 2 0 292 95 no 0.300000 4 0.750000 0.003379 1.000000 34.500000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 38588 38661 -1 74 LSC 0.000000 0 0 61 21 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 IGS_037 igs trnfM-CAU|rps14 trnfM-CAU-rps14 38662 38824 0 163 LSC 0.002181 1 0 135 154 no 0.000000 2 0.000000 0.002181 1.000000 30.600000 rps14 gene rps14 rps14 38825 39127 -1 303 LSC 0.001834 2 0 141 66 no 0.100000 3 0.333333 0.001834 1.000000 27.300000 IGS_038 igs rps14|psaB rps14-psaB 39128 39250 0 123 LSC 0.002891 1 0 148 141 no 0.000000 2 0.000000 0.002891 1.000000 31.600000 psaB gene psaB psaB 39251 41455 -1 2205 LSC 0.001461 7 0 56 300 no 0.200000 5 0.400000 0.001461 1.000000 32.500000 IGS_039 igs psaB|psaA psaB-psaA 41456 41480 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaA gene psaA psaA 41481 43733 -1 2253 LSC 0.000562 3 0 300 129 no 0.100000 4 0.250000 0.000562 1.000000 35.400000 IGS_040 igs psaA|ycf3 psaA-ycf3 43734 44473 0 740 LSC 0.005556 13 33 300 266 yes 0.700000 8 0.875000 0.005510 0.991892 63.100000 ycf3 gene ycf3 ycf3 44474 46446 -1 1973 LSC 0.002196 16 5 50 53 no 0.600000 8 0.750000 0.002198 1.000000 41.300000 IGS_041 igs ycf3|trnS-GGA ycf3-trnS-GGA 46447 47311 0 865 LSC 0.038459 84 235 211 300 yes 0.300000 6 0.500000 0.011683 0.838150 75.700000 trnS-GGA tRNA trnS-GGA trnS-GGA 47312 47398 1 87 LSC 0.000000 0 0 19 300 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_042 igs trnS-GGA|rps4 trnS-GGA-rps4 47399 47692 0 294 LSC 0.000680 1 0 106 32 no 0.100000 2 0.500000 0.000680 1.000000 23.800000 rps4 gene rps4 rps4 47693 48298 -1 606 LSC 0.000917 2 0 300 87 no 0.100000 3 0.333333 0.000917 1.000000 34.200000 IGS_043 igs rps4|trnT-UGU rps4-trnT-UGU 48299 48645 0 347 LSC 0.006712 6 6 300 215 no 0.600000 8 0.750000 0.006712 0.982709 52.600000 trnT-UGU tRNA trnT-UGU trnT-UGU 48646 48718 -1 73 LSC 0.000000 0 0 65 142 no 0.000000 1 0.000000 0.000000 1.000000 23.600000 IGS_044 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 48719 49506 0 788 LSC 0.009955 24 51 138 259 yes 0.800000 9 0.888889 0.008734 0.982234 64.000000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 49507 49540 1 34 LSC 0.000000 0 0 46 225 no 0.000000 1 0.000000 0.000000 1.000000 22.200000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 50071 50129 1 59 LSC 0.000000 0 0 78 18 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 IGS_047 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 50130 50474 0 345 LSC 0.006119 6 199 137 95 no 0.300000 6 0.500000 0.005937 1.000000 41.800000 trnF-GAA tRNA trnF-GAA trnF-GAA 50475 50547 1 73 LSC 0.000000 0 0 17 22 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_048 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 50548 51242 0 695 LSC 0.014916 39 14 90 300 yes 0.600000 8 0.750000 0.014154 0.979856 58.600000 ndhJ gene ndhJ ndhJ 51243 51719 -1 477 LSC 0.000419 1 0 103 300 no 0.100000 2 0.500000 0.000419 1.000000 32.500000 IGS_049 igs ndhJ|ndhK ndhJ-ndhK 51720 51824 0 105 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ndhK gene ndhK ndhK 51825 52502 -1 678 LSC 0.002163 4 0 300 15 no 0.200000 4 0.500000 0.002163 1.000000 31.600000 IGS_050 igs ndhK|ndhC ndhK-ndhC 52503 52559 0 57 LSC 0.009357 1 0 218 300 no 0.000000 2 0.000000 0.009357 1.000000 40.200000 ndhC gene ndhC ndhC 52560 52922 -1 363 LSC 0.000551 1 0 41 187 no 0.100000 2 0.500000 0.000551 1.000000 25.600000 IGS_051 igs ndhC|trnV-UAC ndhC-trnV-UAC 52923 54113 0 1191 LSC 0.007962 25 167 300 300 yes 0.800000 9 0.888889 0.006274 0.982368 66.500000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 54114 54150 -1 37 LSC 0.000000 0 0 43 300 no 0.000000 1 0.000000 0.000000 1.000000 22.000000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 54725 54762 -1 38 LSC 0.000000 0 0 63 122 no 0.000000 1 0.000000 0.000000 1.000000 23.500000 IGS_054 igs trnV-UAC|trnM-CAU trnV-UAC-trnM-CAU 54763 54947 0 185 LSC 0.006126 4 0 101 91 no 0.200000 4 0.500000 0.006126 1.000000 34.800000 trnM-CAU tRNA trnM-CAU trnM-CAU 54948 55019 1 72 LSC 0.000000 0 0 62 19 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 trnT-GGU tRNA trnT-GGU trnT-GGU 54953 55011 1 59 LSC 0.000000 0 0 67 27 no 0.000000 1 0.000000 0.000000 1.000000 20.800000 IGS_056 igs trnT-GGU|atpE trnT-GGU-atpE 55012 55255 0 244 LSC 0.005009 4 11 126 59 no 0.200000 5 0.400000 0.005089 0.995902 36.600000 atpE gene atpE atpE 55256 55657 -1 402 LSC 0.003151 3 0 22 300 no 0.200000 5 0.400000 0.003151 1.000000 28.600000 atpB gene atpB atpB 55654 57150 -1 1497 LSC 0.001395 5 1 100 186 no 0.200000 5 0.400000 0.001396 0.999332 37.400000 IGS_058 igs atpB|rbcL atpB-rbcL 57151 57867 0 717 LSC 0.008523 17 1 3 300 no 0.600000 8 0.750000 0.008525 1.000000 43.400000 rbcL gene rbcL rbcL 57868 59295 1 1428 LSC 0.001867 7 0 93 139 no 0.600000 7 0.857143 0.001867 1.000000 44.700000 IGS_059 igs rbcL|accD rbcL-accD 59296 59965 0 670 LSC 0.004279 7 50 82 49 no 0.600000 8 0.750000 0.004179 0.988060 48.800000 accD gene accD accD 59966 61507 1 1542 LSC 0.001571 8 0 200 160 no 0.500000 6 0.833333 0.001571 1.000000 47.600000 IGS_060 igs accD|psaI accD-psaI 61508 62231 0 724 LSC 0.002072 5 55 300 179 no 0.500000 7 0.714286 0.001087 0.968232 54.600000 psaI gene psaI psaI 62232 62342 1 111 LSC 0.000000 0 0 300 68 no 0.000000 1 0.000000 0.000000 1.000000 23.800000 IGS_061 igs psaI|ycf4 psaI-ycf4 62343 62763 0 421 LSC 0.004962 7 114 300 221 no 0.500000 7 0.714286 0.005345 1.000000 55.300000 ycf4 gene ycf4 ycf4 62764 63318 1 555 LSC 0.001682 3 0 262 147 no 0.100000 3 0.333333 0.001682 1.000000 38.400000 IGS_062 igs ycf4|cemA ycf4-cemA 63319 64244 0 926 LSC 0.008282 21 124 300 20 no 1.000000 10 1.000000 0.006528 0.997840 57.500000 cemA gene cemA cemA 64245 64934 1 690 LSC 0.002931 6 0 280 61 no 0.300000 6 0.500000 0.002931 1.000000 37.600000 IGS_063 igs cemA|petA cemA-petA 64935 65156 0 222 LSC 0.005005 4 0 300 300 no 0.200000 4 0.500000 0.005005 1.000000 42.000000 petA gene petA petA 65157 66119 1 963 LSC 0.000762 2 0 97 16 no 0.100000 3 0.333333 0.000762 1.000000 28.700000 IGS_064 igs petA|psbJ petA-psbJ 66120 67152 0 1033 LSC 0.003550 14 93 300 227 yes 1.000000 10 1.000000 0.003277 0.978703 67.100000 psbJ gene psbJ psbJ 67153 67275 -1 123 LSC 0.003252 2 0 112 104 no 0.200000 3 0.666667 0.003252 1.000000 33.800000 IGS_065 igs psbJ|psbL psbJ-psbL 67276 67415 0 140 LSC 0.003968 2 0 235 300 no 0.200000 3 0.666667 0.003968 1.000000 41.100000 psbL gene psbL psbL 67416 67532 -1 117 LSC 0.000000 0 0 35 300 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_066 igs psbL|psbF psbL-psbF 67533 67554 0 22 LSC 0.000000 0 0 152 300 no 0.000000 1 0.000000 0.000000 1.000000 30.100000 psbF gene psbF psbF 67555 67674 -1 120 LSC 0.000000 0 0 174 300 no 0.000000 1 0.000000 0.000000 1.000000 31.800000 IGS_067 igs psbF|psbE psbF-psbE 67675 67683 0 9 LSC 0.000000 0 0 294 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psbE gene psbE psbE 67684 67935 -1 252 LSC 0.000000 0 0 300 84 no 0.000000 1 0.000000 0.000000 1.000000 25.100000 IGS_068 igs psbE|petL psbE-petL 67936 68912 0 977 LSC 0.009075 34 21 300 59 no 0.600000 8 0.750000 0.009129 1.000000 51.700000 petL gene petL petL 68913 69008 1 96 LSC 0.003704 1 0 132 27 no 0.000000 2 0.000000 0.003704 1.000000 23.700000 IGS_069 igs petL|petG petL-petG 69009 69183 0 175 LSC 0.010540 6 0 36 300 no 0.300000 6 0.500000 0.010540 1.000000 36.100000 petG gene petG petG 69184 69297 1 114 LSC 0.000000 0 0 17 214 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_070 igs petG|trnW-CCA petG-trnW-CCA 69298 69420 0 123 LSC 0.000000 0 0 131 91 no 0.000000 1 0.000000 0.000000 1.000000 25.600000 trnW-CCA tRNA trnW-CCA trnW-CCA 69421 69494 -1 74 LSC 0.000000 0 0 254 17 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_071 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 69495 69655 0 161 LSC 0.005797 3 0 300 147 no 0.200000 4 0.500000 0.005797 1.000000 38.500000 trnP-UGG tRNA trnP-UGG trnP-UGG 69656 69729 -1 74 LSC 0.000000 0 0 143 73 no 0.000000 1 0.000000 0.000000 1.000000 24.200000 trnP-GGG tRNA trnP-GGG trnP-GGG 69658 69728 -1 71 LSC 0.000000 0 0 145 74 no 0.000000 1 0.000000 0.000000 1.000000 24.300000 IGS_073 igs trnP-GGG|psaJ trnP-GGG-psaJ 69729 70109 0 381 LSC 0.008749 8 3 216 127 no 0.700000 8 0.875000 0.008474 1.000000 50.600000 psaJ gene psaJ psaJ 70110 70238 1 129 LSC 0.004134 1 0 142 186 no 0.000000 2 0.000000 0.004134 1.000000 32.200000 IGS_074 igs psaJ|rpl33 psaJ-rpl33 70239 70705 0 467 LSC 0.010088 12 9 1 128 no 0.600000 8 0.750000 0.010195 0.997859 43.500000 rpl33 gene rpl33 rpl33 70706 70906 1 201 LSC 0.008071 3 0 114 140 no 0.100000 3 0.333333 0.008071 1.000000 34.700000 IGS_075 igs rpl33|rps18 rpl33-rps18 70907 71079 0 173 LSC 0.004239 2 2 24 300 no 0.100000 3 0.333333 0.004258 1.000000 27.200000 rps18 gene rps18 rps18 71080 71391 1 312 LSC 0.000000 0 0 32 57 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_076 igs rps18|rpl20 rps18-rpl20 71392 71646 0 255 LSC 0.011329 7 8 300 300 no 0.400000 6 0.666667 0.011687 0.968627 52.700000 rpl20 gene rpl20 rpl20 71647 72033 -1 387 LSC 0.001034 2 0 46 159 no 0.200000 3 0.666667 0.001034 1.000000 28.900000 IGS_077 igs rpl20|rps12 rpl20-rps12 72034 72808 0 775 LSC 0.000946 2 4 300 194 no 0.100000 3 0.333333 0.000948 1.000000 42.800000 rps12_part1 gene rps12 rps12 72809 72922 -1 114 LSC 0.000000 0 0 300 80 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 IGS_078 igs rps12|clpP rps12-clpP 72923 73071 0 149 LSC 0.007308 3 0 300 300 no 0.100000 4 0.250000 0.007308 1.000000 41.400000 clpP gene clpP clpP 73072 75121 -1 2050 LSC 0.002211 16 40 41 118 no 0.800000 9 0.888889 0.002211 0.997073 46.100000 IGS_079 igs clpP|psbB clpP-psbB 75122 75586 0 465 LSC 0.001398 3 24 300 300 no 0.400000 6 0.666667 0.001202 1.000000 52.200000 psbB gene psbB psbB 75587 77113 1 1527 LSC 0.000873 5 0 300 300 no 0.200000 4 0.500000 0.000873 1.000000 44.500000 IGS_080 igs psbB|psbT psbB-psbT 77114 77313 0 200 LSC 0.000000 0 14 300 300 no 0.000000 2 0.000000 0.000000 0.930000 37.600000 psbT gene psbT psbT 77314 77424 1 111 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_081 igs psbT|psbH psbT-psbH 77425 77723 0 299 LSC 0.000000 0 0 300 152 no 0.000000 1 0.000000 0.000000 1.000000 30.100000 psbH gene psbH psbH 77724 77945 1 222 LSC 0.002402 1 0 300 247 no 0.000000 2 0.000000 0.002402 1.000000 35.400000 IGS_082 igs psbH|rpl14 psbH-rpl14 77946 83834 0 5889 LSC 0.002589 51 1 69 288 no 1.000000 10 1.000000 0.002589 0.999830 44.900000 rpl14 gene rpl14 rpl14 83835 84203 -1 369 LSC 0.001987 2 0 53 67 no 0.100000 3 0.333333 0.001987 1.000000 27.600000 IGS_083 igs rpl14|rpl16 rpl14-rpl16 84204 84340 0 137 LSC 0.010706 4 0 80 300 no 0.200000 5 0.400000 0.010706 1.000000 37.000000 rpl16 gene rpl16 rpl16 84341 85800 -1 1460 LSC 0.003364 14 1 37 80 no 0.500000 7 0.714286 0.003288 1.000000 39.900000 IGS_084 igs rpl16|rpl2 rpl16-rpl2 85801 87506 0 1706 LSC 0.004351 24 0 118 300 no 0.800000 9 0.888889 0.004351 1.000000 52.100000 rpl2 gene rpl2 rpl2 87507 89004 -1 1498 IRb 0.000000 0 8 17 300 no 0.100000 2 0.500000 0.000000 1.000000 28.800000 IGS_085 igs rpl2|rpl23 rpl2-rpl23 89005 89022 0 18 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 89023 89304 -1 282 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_086 igs rpl23|trnI-CAU rpl23-trnI-CAU 89305 89469 0 165 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-CAU tRNA trnI-CAU trnI-CAU 89470 89543 -1 74 IRb 0.000000 0 0 300 252 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_087 igs trnI-CAU|ycf2 trnI-CAU-ycf2 89544 89631 0 88 IRb 0.000000 0 0 300 164 no 0.000000 1 0.000000 0.000000 1.000000 31.100000 ycf2 gene ycf2 ycf2 89632 96549 1 6918 IRb 0.000427 9 0 300 300 no 0.400000 7 0.571429 0.000427 1.000000 41.600000 IGS_088 igs ycf2|trnL-CAA ycf2-trnL-CAA 96550 97216 0 667 IRb 0.003198 4 9 256 300 no 0.100000 3 0.333333 0.003206 1.000000 45.700000 trnL-CAA tRNA trnL-CAA trnL-CAA 97217 97297 -1 81 IRb 0.000000 0 0 61 300 no 0.000000 1 0.000000 0.000000 1.000000 23.300000 IGS_089 igs trnL-CAA|ndhB trnL-CAA-ndhB 97298 97886 0 589 IRb 0.000000 0 32 142 300 no 0.300000 5 0.600000 0.000000 0.986418 46.700000 ndhB gene ndhB ndhB 97887 100098 -1 2212 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 38.500000 IGS_090 igs ndhB|rps7 ndhB-rps7 100099 100421 0 323 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.200000 rps7 gene rps7 rps7 100422 100889 -1 468 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_091 igs rps7|rps12 rps7-rps12 100890 100942 0 53 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps12_part2 gene rps12 rps12 100943 101736 -1 794 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_092 igs rps12|trnV-GAC rps12-trnV-GAC 101737 103598 0 1862 IRb 0.001540 9 51 300 300 no 0.500000 6 0.833333 0.001218 0.995704 53.100000 trnV-GAC tRNA trnV-GAC trnV-GAC 103599 103670 1 72 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_093 igs trnV-GAC|rrn16 trnV-GAC-rrn16 103671 103888 0 218 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16 rRNA rrn16 rrn16 103889 105378 1 1490 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_094 igs rrn16|trnI-GAU rrn16-trnI-GAU 105379 105673 0 295 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 105674 105715 1 42 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 106658 106692 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_097 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 106693 106755 0 63 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 106756 106793 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 107607 107643 1 37 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_100 igs trnA-UGC|rrn23 trnA-UGC-rrn23 107644 107796 0 153 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23 rRNA rrn23 rrn23 107797 110605 1 2809 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_101 igs rrn23|rrn4.5 rrn23-rrn4.5 110606 110703 0 98 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5 rRNA rrn4.5 rrn4.5 110704 110806 1 103 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_102 igs rrn4.5|rrn5 rrn4.5-rrn5 110807 111030 0 224 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn5 rRNA rrn5 rrn5 111031 111151 1 121 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_103 igs rrn5|trnR-ACG rrn5-trnR-ACG 111152 111409 0 258 IRb 0.000775 1 6 300 149 no 0.100000 3 0.333333 0.000794 0.976744 34.700000 trnR-ACG tRNA trnR-ACG trnR-ACG 111410 111483 1 74 IRb 0.000000 0 0 300 75 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 IGS_104 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 111484 112086 0 603 IRb 0.004717 8 6 300 300 no 0.500000 7 0.714286 0.004738 1.000000 54.300000 trnN-GUU tRNA trnN-GUU trnN-GUU 112087 112158 -1 72 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_105 igs trnN-GUU|nad5 trnN-GUU-nad5 112159 113716 0 1558 IRb 0.033179 119 111 300 273 yes 1.000000 10 1.000000 0.022319 0.990372 88.700000 nad5 gene nad5 nad5 113717 115957 -1 2241 SSC 0.002985 23 6 3 4 no 0.800000 9 0.888889 0.002993 0.997323 41.500000 IGS_106 igs nad5|rpl32 nad5-rpl32 115958 117120 0 1163 SSC 0.011871 44 150 227 257 yes 0.600000 8 0.750000 0.010980 0.987962 66.700000 rpl32 gene rpl32 rpl32 117121 117285 1 165 SSC 0.001212 1 0 8 92 no 0.100000 2 0.500000 0.001212 1.000000 22.500000 IGS_107 igs rpl32|trnL-UAG rpl32-trnL-UAG 117286 118218 0 933 SSC 0.010813 30 250 173 132 yes 0.800000 9 0.888889 0.010303 0.993569 64.000000 trnL-UAG tRNA trnL-UAG trnL-UAG 118219 118298 1 80 SSC 0.000000 0 0 186 52 no 0.000000 1 0.000000 0.000000 1.000000 22.700000 IGS_108 igs trnL-UAG|ccsA trnL-UAG-ccsA 118299 118396 0 98 SSC 0.016553 4 4 266 32 no 0.600000 8 0.750000 0.016996 0.979592 49.300000 ccsA gene ccsA ccsA 118397 119368 1 972 SSC 0.004184 13 0 7 87 no 0.400000 7 0.571429 0.004184 1.000000 36.600000 IGS_109 igs ccsA|ndhD ccsA-ndhD 119369 119613 0 245 SSC 0.014150 14 1 300 7 no 0.300000 5 0.600000 0.014196 1.000000 38.900000 ndhD gene ndhD ndhD 119614 121116 -1 1503 SSC 0.002706 11 0 33 83 no 0.500000 7 0.714286 0.002706 1.000000 39.000000 IGS_110 igs ndhD|psaC ndhD-psaC 121117 121238 0 122 SSC 0.002914 1 0 107 240 no 0.000000 2 0.000000 0.002914 1.000000 29.100000 psaC gene psaC psaC 121239 121484 -1 246 SSC 0.001445 1 0 38 59 no 0.000000 2 0.000000 0.001445 1.000000 22.800000 IGS_111 igs psaC|ndhE psaC-ndhE 121485 121731 0 247 SSC 0.008007 5 0 5 18 no 0.200000 5 0.400000 0.008007 1.000000 29.000000 ndhE gene ndhE ndhE 121732 122037 -1 306 SSC 0.002977 3 0 18 79 no 0.100000 4 0.250000 0.002977 1.000000 24.700000 IGS_112 igs ndhE|ndhG ndhE-ndhG 122038 122249 0 212 SSC 0.007023 5 0 62 300 no 0.300000 6 0.500000 0.007023 1.000000 35.100000 ndhG gene ndhG ndhG 122250 122780 -1 531 SSC 0.001046 2 0 110 27 no 0.100000 3 0.333333 0.001046 1.000000 28.400000 IGS_113 igs ndhG|ndhI ndhG-ndhI 122781 123186 0 406 SSC 0.017296 21 45 161 12 no 0.400000 7 0.571429 0.017708 0.987685 49.200000 ndhI gene ndhI ndhI 123187 123690 -1 504 SSC 0.001896 4 0 111 18 no 0.400000 5 0.800000 0.001896 1.000000 33.700000 IGS_114 igs ndhI|ndhA ndhI-ndhA 123691 123772 0 82 SSC 0.013279 3 0 300 131 no 0.100000 4 0.250000 0.013279 1.000000 41.000000 ndhA gene ndhA ndhA 123773 125949 -1 2177 SSC 0.002184 14 4 22 300 no 0.600000 8 0.750000 0.002186 1.000000 38.500000 orf188 gene orf188 orf188 125383 125949 -1 567 SSC 0.000627 1 0 300 300 no 0.000000 2 0.000000 0.000627 1.000000 39.800000 IGS_116 igs orf188|rps15 orf188-rps15 125950 127224 0 1275 SSC 0.002092 8 0 170 300 no 0.500000 7 0.714286 0.002092 1.000000 48.900000 rps15 gene rps15 rps15 127225 127497 -1 273 SSC 0.000733 1 0 16 27 no 0.100000 2 0.500000 0.000733 1.000000 22.600000 IGS_117 igs rps15|ycf1 rps15-ycf1 127498 127899 0 402 SSC 0.010073 12 17 289 13 no 0.600000 8 0.750000 0.008506 0.967662 45.600000 ycf1 gene ycf1 ycf1 127900 133599 -1 5700 SSC 0.008959 147 68 16 300 yes 1.000000 10 1.000000 0.008972 0.994737 47.200000 IGS_118 igs ycf1|trnN-GUU ycf1-trnN-GUU 133600 133926 0 327 IRa 0.000000 0 0 8 300 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 trnN-GUU tRNA trnN-GUU trnN-GUU 133927 133998 1 72 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_119 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 133999 134601 0 603 IRa 0.005307 9 6 300 300 no 0.500000 7 0.714286 0.005330 1.000000 54.800000 trnR-ACG tRNA trnR-ACG trnR-ACG 134602 134675 -1 74 IRa 0.000000 0 0 75 300 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 IGS_120 igs trnR-ACG|rrn5 trnR-ACG-rrn5 134676 134933 0 258 IRa 0.000775 1 6 149 300 no 0.100000 3 0.333333 0.000794 0.976744 34.700000 rrn5 rRNA rrn5 rrn5 134934 135054 -1 121 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_121 igs rrn5|rrn4.5 rrn5-rrn4.5 135055 135278 0 224 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5 rRNA rrn4.5 rrn4.5 135279 135381 -1 103 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_122 igs rrn4.5|rrn23 rrn4.5-rrn23 135382 135479 0 98 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23 rRNA rrn23 rrn23 135480 138288 -1 2809 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_123 igs rrn23|trnA-UGC rrn23-trnA-UGC 138289 138441 0 153 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 138442 138476 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 139292 139330 -1 39 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_126 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 139331 139392 0 62 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 139393 139427 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 140370 140411 -1 42 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_129 igs trnI-GAU|rrn16 trnI-GAU-rrn16 140412 140706 0 295 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16 rRNA rrn16 rrn16 140707 142196 -1 1490 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_130 igs rrn16|trnV-GAC rrn16-trnV-GAC 142197 142414 0 218 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnV-GAC tRNA trnV-GAC trnV-GAC 142415 142486 -1 72 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_131 igs trnV-GAC|rps12 trnV-GAC-rps12 142487 144348 0 1862 IRa 0.001325 8 51 300 300 no 0.500000 6 0.833333 0.001170 0.995704 53.000000 rps12_part2 gene rps12 rps12 144349 145142 1 794 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_132 igs rps12|rps7 rps12-rps7 145143 145195 0 53 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 145196 145663 1 468 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_133 igs rps7|ndhB rps7-ndhB 145664 145986 0 323 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.200000 ndhB gene ndhB ndhB 145987 148198 1 2212 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 38.500000 IGS_134 igs ndhB|trnL-CAA ndhB-trnL-CAA 148199 148787 0 589 IRa 0.000000 0 32 300 142 no 0.300000 5 0.600000 0.000000 0.986418 46.700000 trnL-CAA tRNA trnL-CAA trnL-CAA 148788 148868 1 81 IRa 0.000000 0 0 300 61 no 0.000000 1 0.000000 0.000000 1.000000 23.300000 IGS_135 igs trnL-CAA|ycf2 trnL-CAA-ycf2 148869 149535 0 667 IRa 0.003198 4 9 300 256 no 0.100000 3 0.333333 0.003206 1.000000 45.700000 ycf2 gene ycf2 ycf2 149536 156453 -1 6918 IRa 0.000427 9 0 300 300 no 0.400000 7 0.571429 0.000427 1.000000 41.600000 IGS_136 igs ycf2|trnI-CAU ycf2-trnI-CAU 156454 156541 0 88 IRa 0.000000 0 0 164 300 no 0.000000 1 0.000000 0.000000 1.000000 31.100000 trnI-CAU tRNA trnI-CAU trnI-CAU 156542 156615 1 74 IRa 0.000000 0 0 252 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_137 igs trnI-CAU|rpl23 trnI-CAU-rpl23 156616 156780 0 165 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl23 gene rpl23 rpl23 156781 157062 1 282 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_138 igs rpl23|rpl2 rpl23-rpl2 157063 157080 0 18 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl2 gene rpl2 rpl2 157081 158578 1 1498 IRa 0.000000 0 8 300 17 no 0.100000 2 0.500000 0.000000 1.000000 28.800000 IGS_139 igs rpl2|trnH-GUG rpl2-trnH-GUG 158579 23 0 201 IRa 0.019119 10 100 300 139 no 0.600000 8 0.750000 0.016220 0.830846 53.100000