feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score rpl11 gene rpl11 rpl11 53 478 1 426 SSC 0.093897 40 0 3 2 no 1.000000 2 1.000000 NA 1.000000 74.500000 IGS_001 igs rpl11|rpl1 rpl11-rpl1 479 495 0 17 SSC 0.294118 5 0 12 35 no 1.000000 2 1.000000 NA 1.000000 73.400000 rpl1 gene rpl1 rpl1 496 1182 1 687 SSC 0.135371 93 0 1 8 no 1.000000 2 1.000000 NA 1.000000 78.800000 IGS_002 igs rpl1|rpl12 rpl1-rpl12 1183 1248 0 66 SSC 0.229508 14 5 6 5 no 1.000000 2 1.000000 NA 0.924242 77.000000 rpl12 gene rpl12 rpl12 1249 1650 1 402 SSC 0.136816 55 0 1 3 no 1.000000 2 1.000000 NA 1.000000 74.700000 IGS_003 igs rpl12|trnD(gtc) rpl12-trnD(gtc) 1651 1722 0 72 SSC 0.391304 27 3 6 75 no 1.000000 2 1.000000 NA 0.958333 77.000000 trnD(gtc) tRNA trnD(gtc) trnD(gtc) 1723 1795 1 73 SSC 0.000000 0 0 1 2 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_004 igs trnD(gtc)|ftsH trnD(gtc)-ftsH 1796 1806 0 11 SSC 0.272727 3 0 74 0 no 1.000000 2 1.000000 NA 1.000000 72.500000 ftsH gene ftsH ftsH 1807 3960 -1 2154 SSC 0.132312 285 0 2 18 no 1.000000 2 1.000000 NA 1.000000 77.500000 IGS_005 igs ftsH|psaE ftsH-psaE 3961 4200 0 240 SSC 0.075630 18 2 11 74 no 1.000000 2 1.000000 NA 0.991667 71.000000 psaE gene psaE psaE 4201 4407 1 207 SSC 0.062802 13 0 36 4 no 1.000000 2 1.000000 NA 1.000000 68.200000 IGS_006 igs psaE|psbH psaE-psbH 4408 4465 0 58 SSC 0.172414 10 0 8 44 no 1.000000 2 1.000000 NA 1.000000 73.100000 psbH gene psbH psbH 4466 4669 -1 204 SSC 0.024752 5 2 16 18 no 1.000000 2 1.000000 NA 0.990196 53.900000 IGS_007 igs psbH|psbN psbH-psbN 4670 4858 0 189 SSC 0.093407 17 7 86 15 no 1.000000 2 1.000000 NA 0.962963 76.000000 psbN gene psbN psbN 4859 5047 1 189 SSC 0.089947 17 0 15 1 no 1.000000 2 1.000000 NA 1.000000 71.300000 IGS_008 igs psbN|psbT psbN-psbT 5048 5077 0 30 SSC 0.166667 5 0 0 9 no 1.000000 2 1.000000 NA 1.000000 72.500000 psbT gene psbT psbT 5078 5176 -1 99 SSC 0.010101 1 0 2 12 no 1.000000 2 1.000000 NA 1.000000 43.500000 IGS_009 igs psbT|psbB psbT-psbB 5177 5207 0 31 SSC 0.064516 2 0 89 72 no 1.000000 2 1.000000 NA 1.000000 73.500000 psbB gene psbB psbB 5208 6737 -1 1530 SSC 0.084314 129 0 13 43 no 1.000000 2 1.000000 NA 1.000000 77.700000 IGS_010 igs psbB|petF psbB-petF 6738 6942 0 205 SSC 0.076923 14 23 47 24 no 1.000000 2 1.000000 NA 0.887805 73.400000 petF gene petF petF 6943 7248 1 306 SSC 0.084967 26 0 23 0 no 1.000000 2 1.000000 NA 1.000000 70.700000 IGS_011 igs petF|rps10 petF-rps10 7249 7297 0 49 SSC 0.111111 5 4 6 5 no 1.000000 2 1.000000 NA 0.918367 76.800000 rps10 gene rps10 rps10 7298 7654 -1 357 SSC 0.131653 47 0 0 4 no 1.000000 2 1.000000 NA 1.000000 73.700000 IGS_012 igs rps10|tufA rps10-tufA 7655 7683 0 29 SSC 0.250000 7 1 15 6 no 1.000000 2 1.000000 NA 0.965517 76.300000 tufA gene tufA tufA 7684 8913 -1 1230 SSC 0.113008 139 0 2 18 no 1.000000 2 1.000000 NA 1.000000 78.900000 IGS_013 igs tufA|rps7 tufA-rps7 8914 8961 0 48 SSC 0.125000 6 0 8 12 no 1.000000 2 1.000000 NA 1.000000 73.100000 rps7 gene rps7 rps7 8962 9441 -1 480 SSC 0.122917 59 0 9 1 no 1.000000 2 1.000000 NA 1.000000 76.300000 IGS_014 igs rps7|rps12 rps7-rps12 9442 9444 0 3 SSC 0.333333 1 0 17 15 no 1.000000 2 1.000000 NA 1.000000 73.600000 rps12 gene rps12 rps12 9445 9828 -1 384 SSC 0.104167 40 0 1 6 no 1.000000 2 1.000000 NA 1.000000 74.300000 IGS_015 igs rps12|rpl31 rps12-rpl31 9829 9831 0 3 SSC 0.000000 0 0 8 3 no 0.000000 1 0.000000 NA 1.000000 19.000000 rpl31 gene rpl31 rpl31 9832 10053 -1 222 SSC 0.121622 27 0 11 5 no 1.000000 2 1.000000 NA 1.000000 72.900000 IGS_016 igs rpl31|rps9 rpl31-rps9 10054 10065 0 12 SSC 0.111111 1 3 20 3 no 1.000000 2 1.000000 NA 0.750000 69.900000 rps9 gene rps9 rps9 10066 10476 -1 411 SSC 0.165450 68 0 6 1 no 1.000000 2 1.000000 NA 1.000000 74.900000 IGS_017 igs rps9|rpl13 rps9-rpl13 10477 10507 0 31 SSC 0.100000 3 1 3 15 no 1.000000 2 1.000000 NA 0.967742 75.400000 rpl13 gene rpl13 rpl13 10508 10939 -1 432 SSC 0.141204 61 0 11 3 no 1.000000 2 1.000000 NA 1.000000 75.500000 IGS_018 igs rpl13|rpoA rpl13-rpoA 10940 10997 0 58 SSC 0.327273 18 3 14 0 no 1.000000 2 1.000000 NA 0.948276 77.300000 rpoA gene rpoA rpoA 10998 12188 -1 1191 SSC 0.185714 221 1 1 0 no 1.000000 2 1.000000 NA 0.999160 78.800000 IGS_019 igs rpoA|rps11 rpoA-rps11 12189 12215 0 27 SSC 0.296296 8 0 29 6 no 1.000000 2 1.000000 NA 1.000000 73.000000 rps11 gene rps11 rps11 12216 12599 -1 384 SSC 0.132812 51 0 0 5 no 1.000000 2 1.000000 NA 1.000000 74.200000 IGS_020 igs rps11|rps13 rps11-rps13 12600 12670 0 71 SSC 0.297297 11 34 20 0 no 1.000000 2 1.000000 NA 0.521127 66.500000 rps13 gene rps13 rps13 12671 13042 -1 372 SSC 0.131720 49 0 32 3 no 1.000000 2 1.000000 NA 1.000000 74.200000 IGS_021 igs rps13|rpl36 rps13-rpl36 13043 13072 0 30 SSC 0.233333 7 0 6 9 no 1.000000 2 1.000000 NA 1.000000 73.000000 rpl36 gene rpl36 rpl36 13073 13186 -1 114 SSC 0.114035 13 0 3 13 no 1.000000 2 1.000000 NA 1.000000 72.700000 IGS_022 igs rpl36|secY rpl36-secY 13187 13193 0 7 SSC 0.000000 0 0 9 6 no 0.000000 1 0.000000 NA 1.000000 19.200000 secY gene secY secY 13194 14378 -1 1185 SSC 0.158650 188 0 16 5 no 1.000000 2 1.000000 NA 1.000000 79.100000 IGS_023 igs secY|rps5 secY-rps5 14379 14417 0 39 SSC 0.153846 6 0 3 6 no 1.000000 2 1.000000 NA 1.000000 72.700000 rps5 gene rps5 rps5 14418 15047 -1 630 SSC 0.152104 94 12 3 3 yes 1.000000 2 1.000000 NA 0.980952 80.800000 IGS_024 igs rps5|rpl18 rps5-rpl18 15048 15079 0 32 SSC 0.156250 5 0 23 6 no 1.000000 2 1.000000 NA 1.000000 73.000000 rpl18 gene rpl18 rpl18 15080 15394 -1 315 SSC 0.146032 46 0 1 1 no 1.000000 2 1.000000 NA 1.000000 72.900000 IGS_025 igs rpl18|rpl6 rpl18-rpl6 15395 15397 0 3 SSC 0.333333 1 0 7 18 no 1.000000 2 1.000000 NA 1.000000 73.000000 rpl6 gene rpl6 rpl6 15398 15937 -1 540 SSC 0.127778 69 0 1 1 no 1.000000 2 1.000000 NA 1.000000 77.600000 IGS_026 igs rpl6|rps8 rpl6-rps8 15938 15950 0 13 SSC 0.307692 4 0 17 8 no 1.000000 2 1.000000 NA 1.000000 73.100000 rps8 gene rps8 rps8 15951 16352 -1 402 SSC 0.114428 46 0 6 1 no 1.000000 2 1.000000 NA 1.000000 74.700000 IGS_027 igs rps8|rpl5 rps8-rpl5 16353 16362 0 10 SSC 0.100000 1 0 5 2 no 1.000000 2 1.000000 NA 1.000000 72.600000 rpl5 gene rpl5 rpl5 16363 16911 -1 549 SSC 0.142077 78 0 8 13 no 1.000000 2 1.000000 NA 1.000000 78.300000 IGS_028 igs rpl5|rpl14 rpl5-rpl14 16912 16943 0 32 SSC 0.125000 4 0 4 3 no 1.000000 2 1.000000 NA 1.000000 72.700000 rpl14 gene rpl14 rpl14 16944 17309 -1 366 SSC 0.095628 35 0 0 2 no 1.000000 2 1.000000 NA 1.000000 73.300000 IGS_029 igs rpl14|rps17 rpl14-rps17 17310 17325 0 16 SSC 0.125000 2 0 11 33 no 1.000000 2 1.000000 NA 1.000000 73.300000 rps17 gene rps17 rps17 17326 17574 -1 249 SSC 0.112450 28 0 11 7 no 1.000000 2 1.000000 NA 1.000000 73.000000 IGS_030 igs rps17|rpl29 rps17-rpl29 17575 17604 0 30 SSC 0.172414 5 1 5 4 no 1.000000 2 1.000000 NA 0.966667 76.000000 rpl29 gene rpl29 rpl29 17605 17841 -1 237 SSC 0.126582 30 0 7 5 no 1.000000 2 1.000000 NA 1.000000 72.900000 IGS_031 igs rpl29|rpl16 rpl29-rpl16 17842 17847 0 6 SSC 0.166667 1 0 14 3 no 1.000000 2 1.000000 NA 1.000000 72.700000 rpl16 gene rpl16 rpl16 17848 18252 -1 405 SSC 0.108642 44 0 0 5 no 1.000000 2 1.000000 NA 1.000000 74.700000 IGS_032 igs rpl16|rps3 rpl16-rps3 18253 18309 0 57 SSC 0.229167 11 9 47 6 no 1.000000 2 1.000000 NA 0.842105 74.800000 rps3 gene rps3 rps3 18310 18999 -1 690 SSC 0.137681 95 0 2 0 no 1.000000 2 1.000000 NA 1.000000 78.800000 IGS_033 igs rps3|rpl22 rps3-rpl22 19000 19035 0 36 SSC 0.222222 8 0 53 5 no 1.000000 2 1.000000 NA 1.000000 72.900000 rpl22 gene rpl22 rpl22 19036 19398 -1 363 SSC 0.150000 54 3 1 1 no 1.000000 2 1.000000 NA 0.991736 74.700000 IGS_034 igs rpl22|rps19 rpl22-rps19 19399 19411 0 13 SSC 0.153846 2 0 5 21 no 1.000000 2 1.000000 NA 1.000000 72.900000 rps19 gene rps19 rps19 19412 19708 -1 297 SSC 0.117845 35 0 10 6 no 1.000000 2 1.000000 NA 1.000000 73.000000 IGS_035 igs rps19|rpl2 rps19-rpl2 19709 19728 0 20 SSC 0.350000 7 0 6 3 no 1.000000 2 1.000000 NA 1.000000 72.700000 rpl2 gene rpl2 rpl2 19729 20556 -1 828 SSC 0.131643 109 0 0 2 no 1.000000 2 1.000000 NA 1.000000 78.800000 IGS_036 igs rpl2|rpl23 rpl2-rpl23 20557 20571 0 15 SSC 0.200000 3 0 8 3 no 1.000000 2 1.000000 NA 1.000000 72.700000 rpl23 gene rpl23 rpl23 20572 20922 -1 351 SSC 0.142029 49 6 2 3 no 1.000000 2 1.000000 NA 0.982906 75.400000 IGS_037 igs rpl23|rpl4 rpl23-rpl4 20923 20948 0 26 SSC 0.346154 9 0 4 3 no 1.000000 2 1.000000 NA 1.000000 72.700000 rpl4 gene rpl4 rpl4 20949 21719 -1 771 SSC 0.176394 136 0 6 0 no 1.000000 2 1.000000 NA 1.000000 78.800000 IGS_038 igs rpl4|rpl3 rpl4-rpl3 21720 21765 0 46 SSC 0.152174 7 0 27 1 no 1.000000 2 1.000000 NA 1.000000 72.600000 rpl3 gene rpl3 rpl3 21766 22422 -1 657 SSC 0.126332 83 0 1 10 no 1.000000 2 1.000000 NA 1.000000 78.800000 IGS_039 igs rpl3|psaA rpl3-psaA 22423 22606 0 184 SSC 0.273224 50 1 47 1 no 1.000000 2 1.000000 NA 0.994565 73.100000 psaA gene psaA psaA 22607 22753 -1 147 IRb 0.034014 5 0 3 43 no 1.000000 2 1.000000 NA 1.000000 57.300000 IGS_040 igs psaA|petJ psaA-petJ 22754 22889 0 136 IRb 0.080882 11 0 83 9 no 1.000000 2 1.000000 NA 1.000000 70.800000 petJ gene petJ petJ 22890 23225 -1 336 IRb 0.077381 26 0 10 1 no 1.000000 2 1.000000 NA 1.000000 70.500000 IGS_041 igs petJ|psbV petJ-psbV 23226 23267 0 42 IRb 0.071429 3 0 15 30 no 1.000000 2 1.000000 NA 1.000000 70.100000 psbV gene psbV psbV 23268 23747 -1 480 IRb 0.075000 36 0 19 27 no 1.000000 2 1.000000 NA 1.000000 74.500000 IGS_042 igs psbV|clpC_B psbV-clpC_B 23748 23832 0 85 IRb 0.246914 20 4 3 0 no 1.000000 2 1.000000 NA 0.952941 77.100000 clpC_B gene clpC_B clpC_B 23833 25170 -1 1338 IRb 0.161798 216 3 0 12 no 1.000000 2 1.000000 NA 0.997758 79.000000 IGS_043 igs clpC_B|rns clpC_B-rns 25171 25484 0 314 IRb 0.153094 47 7 5 72 no 1.000000 2 1.000000 NA 0.977707 75.300000 rns rRNA rns rns 25485 26963 1 1479 IRb 0.006761 10 0 48 26 no 1.000000 2 1.000000 NA 1.000000 49.600000 IGS_044 igs rns|trnI(gat) rns-trnI(gat) 26964 27031 0 68 IRb 0.071429 4 12 276 168 yes 1.000000 2 1.000000 NA 0.823529 81.200000 trnI(gat) tRNA trnI(gat) trnI(gat) 27032 27105 1 74 IRb 0.000000 0 0 6 94 no 0.000000 1 0.000000 NA 1.000000 19.200000 IGS_045 igs trnI(gat)|trnA(tgc) trnI(gat)-trnA(tgc) 27106 27108 0 3 IRb 0.000000 0 0 80 91 no 0.000000 1 0.000000 NA 1.000000 24.800000 trnA(tgc) tRNA trnA(tgc) trnA(tgc) 27109 27181 1 73 IRb 0.000000 0 0 83 18 no 0.000000 1 0.000000 NA 1.000000 20.100000 IGS_046 igs trnA(tgc)|rnl trnA(tgc)-rnl 27182 27223 0 42 IRb 0.071429 3 0 156 69 no 1.000000 2 1.000000 NA 1.000000 74.100000 rnl rRNA rnl rnl 27224 30169 1 2946 IRb 0.017001 50 5 6 2 no 1.000000 2 1.000000 NA 0.998303 50.800000 IGS_047 igs rnl|rrn5 rnl-rrn5 30170 30229 0 60 IRb 0.050000 3 0 24 18 no 1.000000 2 1.000000 NA 1.000000 67.600000 rrn5 rRNA rrn5 rrn5 30230 30343 1 114 IRb 0.017544 2 0 29 16 no 1.000000 2 1.000000 NA 1.000000 48.800000 IGS_048 igs rrn5|psaC rrn5-psaC 30344 30419 0 76 IRb 0.152778 11 4 45 23 no 1.000000 2 1.000000 NA 0.947368 79.000000 psaC gene psaC psaC 30420 30665 1 246 IRb 0.109756 27 0 22 7 no 1.000000 2 1.000000 NA 1.000000 73.000000 IGS_049 igs psaC|psaJ psaC-psaJ 30666 30687 0 22 IRb 0.227273 5 0 23 17 no 1.000000 2 1.000000 NA 1.000000 73.800000 psaJ gene psaJ psaJ 30688 30822 1 135 IRb 0.111111 15 0 2 27 no 1.000000 2 1.000000 NA 1.000000 72.600000 IGS_050 igs psaJ|thiG psaJ-thiG 30823 30846 0 24 IRb 0.000000 0 0 6 3 no 0.000000 1 0.000000 NA 1.000000 19.000000 thiG gene thiG thiG 30847 31656 -1 810 IRb 0.090123 73 0 30 55 yes 1.000000 2 1.000000 NA 1.000000 79.800000 IGS_051 igs thiG|rpl19 thiG-rpl19 31657 31657 0 1 IRb 0.000000 0 0 17 54 no 0.000000 1 0.000000 NA 1.000000 20.000000 rpl19 gene rpl19 rpl19 31658 32035 -1 378 IRb 0.129630 49 0 18 1 no 1.000000 2 1.000000 NA 1.000000 74.200000 IGS_052 igs rpl19|rpl27 rpl19-rpl27 32036 32049 0 14 IRb 0.214286 3 0 14 0 no 1.000000 2 1.000000 NA 1.000000 72.500000 rpl27 gene rpl27 rpl27 32050 32388 -1 339 LSC 0.182891 62 0 3 1 no 1.000000 2 1.000000 NA 1.000000 73.400000 IGS_053 igs rpl27|rpl21 rpl27-rpl21 32389 32396 0 8 LSC 0.500000 4 0 20 0 no 1.000000 2 1.000000 NA 1.000000 72.500000 rpl21 gene rpl21 rpl21 32397 32774 -1 378 LSC 0.113757 43 0 1 1 no 1.000000 2 1.000000 NA 1.000000 74.200000 IGS_054 igs rpl21|ycf54 rpl21-ycf54 32775 32797 0 23 LSC 0.391304 9 0 36 13 no 1.000000 2 1.000000 NA 1.000000 73.500000 ycf54 gene ycf54 ycf54 32798 33136 -1 339 LSC 0.112094 38 0 2 4 no 1.000000 2 1.000000 NA 1.000000 73.500000 IGS_055 igs ycf54|ycf60 ycf54-ycf60 33137 33199 0 63 LSC 0.075472 4 10 23 5 no 1.000000 2 1.000000 NA 0.841270 70.100000 ycf60 gene ycf60 ycf60 33200 34393 -1 1194 LSC 0.208543 249 0 46 27 yes 1.000000 2 1.000000 NA 1.000000 80.800000 IGS_056 igs ycf60|orf1_gon ycf60-orf1_gon 34394 34444 0 51 LSC 0.214286 9 9 3 7 no 1.000000 2 1.000000 NA 0.823529 74.000000 orf1_gon gene orf1_gon orf1_gon 34445 35440 -1 996 LSC 0.243706 242 3 3 3 yes 1.000000 2 1.000000 NA 0.996988 79.300000 IGS_057 igs orf1_gon|secA orf1_gon-secA 35441 35612 0 172 LSC 0.198758 32 11 8 16 no 1.000000 2 1.000000 NA 0.936047 77.600000 secA gene secA secA 35613 38246 1 2634 LSC 0.162491 428 0 1 2 no 1.000000 2 1.000000 NA 1.000000 76.500000 IGS_058 igs secA|rpl34 secA-rpl34 38247 38280 0 34 LSC 0.333333 11 1 3 8 no 1.000000 2 1.000000 NA 0.970588 75.600000 rpl34 gene rpl34 rpl34 38281 38430 1 150 LSC 0.140000 21 0 1 1 no 1.000000 2 1.000000 NA 1.000000 72.600000 IGS_059 igs rpl34|ycf46 rpl34-ycf46 38431 38445 0 15 LSC 0.133333 2 0 0 20 no 1.000000 2 1.000000 NA 1.000000 72.500000 ycf46 gene ycf46 ycf46 38446 39912 1 1467 LSC 0.175187 257 0 11 1 no 1.000000 2 1.000000 NA 1.000000 78.800000 IGS_060 igs ycf46|ccs1 ycf46-ccs1 39913 39948 0 36 LSC 0.400000 10 11 3 11 no 1.000000 2 1.000000 NA 0.694444 70.400000 ccs1 gene ccs1 ccs1 39949 41199 1 1251 LSC 0.190248 238 0 1 0 no 1.000000 2 1.000000 NA 1.000000 78.800000 IGS_061 igs ccs1|rps6 ccs1-rps6 41200 41236 0 37 LSC 0.218750 7 5 2 14 no 1.000000 2 1.000000 NA 0.864865 75.100000 rps6 gene rps6 rps6 41237 41557 1 321 LSC 0.133956 43 0 9 1 no 1.000000 2 1.000000 NA 1.000000 73.000000 IGS_062 igs rps6|lysR rps6-lysR 41558 41617 0 60 LSC 0.316667 19 0 5 4 no 1.000000 2 1.000000 NA 1.000000 72.800000 lysR gene lysR lysR 41618 42445 1 828 LSC 0.335419 268 29 5 3 yes 1.000000 2 1.000000 NA 0.964976 82.400000 IGS_063 igs lysR|ccsA lysR-ccsA 42446 42472 0 27 LSC 0.407407 11 0 5 3 no 1.000000 2 1.000000 NA 1.000000 72.700000 ccsA gene ccsA ccsA 42473 43405 -1 933 LSC 0.146838 137 0 1 1 no 1.000000 2 1.000000 NA 1.000000 78.800000 IGS_064 igs ccsA|trnL(caa) ccsA-trnL(caa) 43406 43490 0 85 LSC 0.231707 19 3 13 54 no 1.000000 2 1.000000 NA 0.964706 76.900000 trnL(caa) tRNA trnL(caa) trnL(caa) 43491 43571 1 81 LSC 0.012346 1 0 0 5 no 1.000000 2 1.000000 NA 1.000000 44.600000 IGS_065 igs trnL(caa)|sufB trnL(caa)-sufB 43572 43660 0 89 LSC 0.213483 19 0 26 16 no 1.000000 2 1.000000 NA 1.000000 73.700000 sufB gene sufB sufB 43661 45151 1 1491 LSC 0.138162 206 0 2 15 no 1.000000 2 1.000000 NA 1.000000 78.900000 IGS_066 igs sufB|sufC sufB-sufC 45152 45198 0 47 LSC 0.424242 14 14 3 6 no 1.000000 2 1.000000 NA 0.702128 70.600000 sufC gene sufC sufC 45199 46065 1 867 LSC 0.160323 139 0 1 2 no 1.000000 2 1.000000 NA 1.000000 78.800000 IGS_067 igs sufC|clpC_A sufC-clpC_A 46066 46162 0 97 LSC 0.276596 26 3 1 7 no 1.000000 2 1.000000 NA 0.969072 75.600000 clpC_A gene clpC_A clpC_A 46163 47203 1 1041 LSC 0.131604 137 0 1 7 no 1.000000 2 1.000000 NA 1.000000 78.800000 IGS_068 igs clpC_A|trnK(ttt) clpC_A-trnK(ttt) 47204 47317 0 114 LSC 0.308411 33 7 3 95 no 1.000000 2 1.000000 NA 0.938596 77.200000 trnK(ttt) tRNA trnK(ttt) trnK(ttt) 47318 47389 1 72 LSC 0.000000 0 0 28 23 no 0.000000 1 0.000000 NA 1.000000 20.500000 IGS_069 igs trnK(ttt)|psbY trnK(ttt)-psbY 47390 47500 0 111 LSC 0.081081 9 0 100 35 no 1.000000 2 1.000000 NA 1.000000 72.800000 psbY gene psbY psbY 47501 47611 1 111 LSC 0.036036 4 0 38 22 no 1.000000 2 1.000000 NA 1.000000 59.900000 IGS_070 igs psbY|ycf12 psbY-ycf12 47612 47758 0 147 LSC 0.241135 34 6 4 0 no 1.000000 2 1.000000 NA 0.959184 76.500000 ycf12 gene ycf12 ycf12 47759 47863 -1 105 LSC 0.028571 3 0 0 9 no 1.000000 2 1.000000 NA 1.000000 53.900000 IGS_071 igs ycf12|rbcS ycf12-rbcS 47864 48017 0 154 LSC 0.122449 18 7 71 48 yes 1.000000 2 1.000000 NA 0.954545 80.500000 rbcS gene rbcS rbcS 48018 48443 -1 426 LSC 0.044601 19 0 6 7 no 1.000000 2 1.000000 NA 1.000000 66.200000 IGS_072 igs rbcS|rbcL rbcS-rbcL 48444 48498 0 55 LSC 0.127273 7 0 134 9 no 1.000000 2 1.000000 NA 1.000000 73.200000 rbcL gene rbcL rbcL 48499 49962 -1 1464 LSC 0.046448 68 0 2 100 no 1.000000 2 1.000000 NA 1.000000 70.600000 IGS_073 igs rbcL|thiS rbcL-thiS 49963 50278 0 316 LSC 0.177994 55 7 98 9 no 1.000000 2 1.000000 NA 0.977848 75.700000 thiS gene thiS thiS 50279 50518 1 240 LSC 0.195833 47 0 3 0 no 1.000000 2 1.000000 NA 1.000000 72.500000 IGS_074 igs thiS|trnG(gcc) thiS-trnG(gcc) 50519 50530 0 12 LSC 0.416667 5 0 6 74 no 1.000000 2 1.000000 NA 1.000000 73.000000 trnG(gcc) tRNA trnG(gcc) trnG(gcc) 50531 50602 -1 72 LSC 0.000000 0 0 2 2 no 0.000000 1 0.000000 NA 1.000000 18.900000 IGS_075 igs trnG(gcc)|trnE(ttc) trnG(gcc)-trnE(ttc) 50603 50614 0 12 LSC 0.416667 5 0 74 74 no 1.000000 2 1.000000 NA 1.000000 78.000000 trnE(ttc) tRNA trnE(ttc) trnE(ttc) 50615 50687 -1 73 LSC 0.000000 0 0 0 1 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_076 igs trnE(ttc)|atpA trnE(ttc)-atpA 50688 50820 0 133 LSC 0.312000 39 8 73 0 no 1.000000 2 1.000000 NA 0.939850 77.100000 atpA gene atpA atpA 50821 52383 -1 1563 LSC 0.103647 162 0 0 3 no 1.000000 2 1.000000 NA 1.000000 78.600000 IGS_077 igs atpA|atpD atpA-atpD 52384 52511 0 128 LSC 0.150794 19 2 26 6 no 1.000000 2 1.000000 NA 0.984375 74.500000 atpD gene atpD atpD 52512 53195 -1 684 LSC 0.137427 94 0 1 10 no 1.000000 2 1.000000 NA 1.000000 78.800000 IGS_078 igs atpD|atpF atpD-atpF 53196 53247 0 52 LSC 0.096154 5 0 8 3 no 1.000000 2 1.000000 NA 1.000000 72.200000 atpF gene atpF atpF 53248 53679 -1 432 LSC 0.090278 39 0 0 11 no 1.000000 2 1.000000 NA 1.000000 74.000000 IGS_079 igs atpF|atpG atpF-atpG 53680 53697 0 18 LSC 0.166667 3 0 29 18 no 1.000000 2 1.000000 NA 1.000000 73.800000 atpG gene atpG atpG 53698 54162 -1 465 LSC 0.090323 42 0 0 39 no 1.000000 2 1.000000 NA 1.000000 74.700000 IGS_080 igs atpG|atpH atpG-atpH 54163 54241 0 79 LSC 0.051282 4 1 68 30 no 1.000000 2 1.000000 NA 0.987342 69.800000 atpH gene atpH atpH 54242 54493 -1 252 LSC 0.043651 11 0 19 54 no 1.000000 2 1.000000 NA 1.000000 64.000000 IGS_081 igs atpH|atpI atpH-atpI 54494 54564 0 71 LSC 0.140845 10 0 62 3 no 1.000000 2 1.000000 NA 1.000000 72.700000 atpI gene atpI atpI 54565 55293 -1 729 LSC 0.109739 80 0 0 7 no 1.000000 2 1.000000 NA 1.000000 78.800000 IGS_082 igs atpI|tsf atpI-tsf 55294 55377 0 84 LSC 0.071429 6 0 3 9 no 1.000000 2 1.000000 NA 1.000000 69.200000 tsf gene tsf tsf 55378 55947 -1 570 LSC 0.170175 97 0 0 3 no 1.000000 2 1.000000 NA 1.000000 78.100000 IGS_083 igs tsf|rps2 tsf-rps2 55948 56003 0 56 LSC 0.236364 13 1 5 5 no 1.000000 2 1.000000 NA 0.982143 74.600000 rps2 gene rps2 rps2 56004 56774 -1 771 LSC 0.148052 114 1 2 5 no 1.000000 2 1.000000 NA 0.998703 79.000000 IGS_084 igs rps2|rpoC2 rps2-rpoC2 56775 56952 0 178 LSC 0.297468 47 20 15 3 no 1.000000 2 1.000000 NA 0.887640 75.800000 rpoC2 gene rpoC2 rpoC2 56953 61026 -1 4074 LSC 0.186332 758 6 1 4 yes 1.000000 2 1.000000 NA 0.998527 74.200000 IGS_085 igs rpoC2|rpoC1 rpoC2-rpoC1 61027 61139 0 113 LSC 0.304762 32 8 7 1 no 1.000000 2 1.000000 NA 0.929204 76.800000 rpoC1 gene rpoC1 rpoC1 61140 63473 -1 2334 LSC 0.175236 409 0 1 1 yes 1.000000 2 1.000000 NA 1.000000 77.100000 IGS_086 igs rpoC1|rpoB rpoC1-rpoB 63474 63500 0 27 LSC 0.555556 15 0 2 11 no 1.000000 2 1.000000 NA 1.000000 72.600000 rpoB gene rpoB rpoB 63501 66641 -1 3141 LSC 0.162050 509 0 0 3 no 1.000000 2 1.000000 NA 1.000000 75.400000 IGS_087 igs rpoB|rps20 rpoB-rps20 66642 66701 0 60 LSC 0.258621 15 2 24 3 no 1.000000 2 1.000000 NA 0.966667 76.000000 rps20 gene rps20 rps20 66702 67007 -1 306 LSC 0.101307 31 0 1 1 no 1.000000 2 1.000000 NA 1.000000 72.700000 IGS_088 igs rps20|rpl33 rps20-rpl33 67008 67207 0 200 LSC 0.203046 40 3 14 24 no 1.000000 2 1.000000 NA 0.985000 75.000000 rpl33 gene rpl33 rpl33 67208 67405 1 198 LSC 0.126263 25 0 1 1 no 1.000000 2 1.000000 NA 1.000000 72.600000 IGS_089 igs rpl33|rps18 rpl33-rps18 67406 67411 0 6 LSC 0.200000 1 1 30 17 no 1.000000 2 1.000000 NA 0.833333 75.300000 rps18 gene rps18 rps18 67412 67630 1 219 LSC 0.114155 25 0 4 0 no 1.000000 2 1.000000 NA 1.000000 72.500000 IGS_090 igs rps18|ycf3 rps18-ycf3 67631 67653 0 23 LSC 0.333333 7 2 3 9 no 1.000000 2 1.000000 NA 0.913043 76.500000 ycf3 gene ycf3 ycf3 67654 68172 1 519 LSC 0.107900 56 0 2 0 no 1.000000 2 1.000000 NA 1.000000 77.100000 IGS_091 igs ycf3|atpB ycf3-atpB 68173 68239 0 67 LSC 0.138462 9 2 15 20 no 1.000000 2 1.000000 NA 0.970149 76.500000 atpB gene atpB atpB 68240 69721 1 1482 LSC 0.100068 148 3 47 29 yes 1.000000 2 1.000000 NA 0.997976 81.100000 IGS_092 igs atpB|atpE atpB-atpE 69722 69730 0 9 LSC 0.000000 0 0 3 20 no 0.000000 1 0.000000 NA 1.000000 19.000000 atpE gene atpE atpE 69731 70153 1 423 LSC 0.134752 57 0 12 0 no 1.000000 2 1.000000 NA 1.000000 75.100000 IGS_093 igs atpE|tatC atpE-tatC 70154 70190 0 37 LSC 0.324324 12 0 5 21 no 1.000000 2 1.000000 NA 1.000000 72.900000 tatC gene tatC tatC 70191 70949 1 759 LSC 0.143610 109 0 3 2 no 1.000000 2 1.000000 NA 1.000000 78.900000 IGS_094 igs tatC|petA tatC-petA 70950 71018 0 69 LSC 0.101449 7 0 0 47 no 1.000000 2 1.000000 NA 1.000000 72.500000 petA gene petA petA 71019 71981 1 963 LSC 0.120457 116 0 46 0 no 1.000000 2 1.000000 NA 1.000000 78.800000 IGS_095 igs petA|psbA petA-psbA 71982 72162 0 181 LSC 0.281690 40 39 18 201 no 1.000000 2 1.000000 NA 0.784530 74.000000 psbA gene psbA psbA 72163 73245 -1 1083 LSC 0.028624 31 0 7 40 no 1.000000 2 1.000000 NA 1.000000 60.700000 IGS_096 igs psbA|chlN psbA-chlN 73246 73636 0 391 LSC 0.206395 71 47 81 0 no 1.000000 2 1.000000 NA 0.879795 77.300000 chlN gene chlN chlN 73637 74971 -1 1335 LSC 0.155056 207 0 0 1 no 1.000000 2 1.000000 NA 1.000000 78.800000 IGS_097 igs chlN|chlL chlN-chlL 74972 75022 0 51 LSC 0.260870 6 28 14 8 no 1.000000 2 1.000000 NA 0.450980 66.200000 chlL gene chlL chlL 75023 75880 -1 858 LSC 0.125874 108 0 32 2 no 1.000000 2 1.000000 NA 1.000000 78.900000 IGS_098 igs chlL|trnR(tct) chlL-trnR(tct) 75881 76021 0 141 LSC 0.227941 31 5 14 52 no 1.000000 2 1.000000 NA 0.964539 77.000000 trnR(tct) tRNA trnR(tct) trnR(tct) 76022 76094 -1 73 LSC 0.013699 1 0 0 78 no 1.000000 2 1.000000 NA 1.000000 45.400000 IGS_099 igs trnR(tct)|trnV(tac) trnR(tct)-trnV(tac) 76095 76100 0 6 LSC 0.000000 0 0 20 72 no 0.000000 1 0.000000 NA 1.000000 20.200000 trnV(tac) tRNA trnV(tac) trnV(tac) 76101 76172 -1 72 LSC 0.000000 0 0 26 0 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_100 igs trnV(tac)|psbI trnV(tac)-psbI 76173 76271 0 99 LSC 0.186813 17 8 98 5 no 1.000000 2 1.000000 NA 0.919192 76.900000 psbI gene psbI psbI 76272 76382 -1 111 LSC 0.045045 5 0 2 51 no 1.000000 2 1.000000 NA 1.000000 63.600000 IGS_101 igs psbI|trnS(tga) psbI-trnS(tga) 76383 76520 0 138 LSC 0.130435 18 0 65 130 no 1.000000 2 1.000000 NA 1.000000 77.400000 trnS(tga) tRNA trnS(tga) trnS(tga) 76521 76605 -1 85 LSC 0.000000 0 0 6 45 no 0.000000 1 0.000000 NA 1.000000 19.200000 IGS_102 igs trnS(tga)|psaD trnS(tga)-psaD 76606 76652 0 47 LSC 0.021277 1 0 91 10 no 1.000000 2 1.000000 NA 1.000000 50.500000 psaD gene psaD psaD 76653 77078 -1 426 LSC 0.070423 30 0 1 55 no 1.000000 2 1.000000 NA 1.000000 71.500000 IGS_103 igs psaD|trnfM(cat) psaD-trnfM(cat) 77079 77157 0 79 LSC 0.050633 4 0 14 78 no 1.000000 2 1.000000 NA 1.000000 67.400000 trnfM(cat) tRNA trnfM(cat) trnfM(cat) 77158 77231 -1 74 LSC 0.000000 0 0 8 4 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_104 igs trnfM(cat)|secG trnfM(cat)-secG 77232 77356 0 125 LSC 0.309735 35 12 82 17 no 1.000000 2 1.000000 NA 0.904000 77.300000 secG gene secG secG 77357 77536 -1 180 LSC 0.150000 27 0 0 1 no 1.000000 2 1.000000 NA 1.000000 72.500000 IGS_105 igs secG|petM secG-petM 77537 77608 0 72 LSC 0.180556 13 0 6 6 no 1.000000 2 1.000000 NA 1.000000 73.000000 petM gene petM petM 77609 77704 -1 96 LSC 0.104167 10 0 5 14 no 1.000000 2 1.000000 NA 1.000000 72.900000 IGS_106 igs petM|petN petM-petN 77705 77758 0 54 LSC 0.245283 13 1 8 6 no 1.000000 2 1.000000 NA 0.981481 74.700000 petN gene petN petN 77759 77848 -1 90 LSC 0.100000 9 0 0 24 no 1.000000 2 1.000000 NA 1.000000 72.500000 IGS_107 igs petN|rps16 petN-rps16 77849 77905 0 57 LSC 0.036364 2 2 5 12 no 1.000000 2 1.000000 NA 0.964912 62.000000 rps16 gene rps16 rps16 77906 78145 -1 240 LSC 0.095833 23 0 5 3 no 1.000000 2 1.000000 NA 1.000000 72.200000 IGS_108 igs rps16|ycf19 rps16-ycf19 78146 78190 0 45 LSC 0.355556 16 0 7 6 no 1.000000 2 1.000000 NA 1.000000 73.000000 ycf19 gene ycf19 ycf19 78191 78820 -1 630 LSC 0.247619 156 0 4 2 yes 1.000000 2 1.000000 NA 1.000000 78.900000 IGS_109 igs ycf19|trnH(gtg) ycf19-trnH(gtg) 78821 78906 0 86 LSC 0.279070 24 0 4 75 no 1.000000 2 1.000000 NA 1.000000 72.800000 trnH(gtg) tRNA trnH(gtg) trnH(gtg) 78907 78980 -1 74 LSC 0.000000 0 0 3 1 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_110 igs trnH(gtg)|rps4 trnH(gtg)-rps4 78981 79102 0 122 LSC 0.183333 22 2 77 5 no 1.000000 2 1.000000 NA 0.983607 74.500000 rps4 gene rps4 rps4 79103 79729 1 627 LSC 0.125997 79 0 4 0 no 1.000000 2 1.000000 NA 1.000000 78.800000 IGS_111 igs rps4|psbW rps4-psbW 79730 79741 0 12 LSC 1.000000 2 10 3 4 no 1.000000 2 1.000000 NA 0.166667 62.300000 psbW gene psbW psbW 79742 80098 -1 357 LSC 0.225989 80 3 10 1 no 1.000000 2 1.000000 NA 0.991597 74.600000 IGS_112 igs psbW|trnR(acg) psbW-trnR(acg) 80099 80173 0 75 LSC 0.200000 15 0 3 84 no 1.000000 2 1.000000 NA 1.000000 72.700000 trnR(acg) tRNA trnR(acg) trnR(acg) 80174 80246 1 73 LSC 0.000000 0 0 1 11 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_113 igs trnR(acg)|trnQ(ttg) trnR(acg)-trnQ(ttg) 80247 80293 0 47 LSC 0.234043 11 0 74 74 no 1.000000 2 1.000000 NA 1.000000 78.000000 trnQ(ttg) tRNA trnQ(ttg) trnQ(ttg) 80294 80365 1 72 LSC 0.000000 0 0 3 2 no 0.000000 1 0.000000 NA 1.000000 18.900000 IGS_114 igs trnQ(ttg)|groEL trnQ(ttg)-groEL 80366 80423 0 58 LSC 0.310345 18 0 75 8 no 1.000000 2 1.000000 NA 1.000000 73.100000 groEL gene groEL groEL 80424 82010 1 1587 LSC 0.215879 329 63 2 1 yes 1.000000 2 1.000000 NA 0.960302 82.500000 IGS_115 igs groEL|psaI groEL-psaI 82011 82094 0 84 LSC 0.107143 9 0 3 15 no 1.000000 2 1.000000 NA 1.000000 72.700000 psaI gene psaI psaI 82095 82229 1 135 LSC 0.118519 16 0 22 0 no 1.000000 2 1.000000 NA 1.000000 72.500000 IGS_116 igs psaI|psbJ psaI-psbJ 82230 82286 0 57 LSC 0.263158 15 0 6 27 no 1.000000 2 1.000000 NA 1.000000 73.000000 psbJ gene psbJ psbJ 82287 82406 -1 120 LSC 0.016667 2 0 2 27 no 1.000000 2 1.000000 NA 1.000000 47.200000 IGS_117 igs psbJ|psbL psbJ-psbL 82407 82480 0 74 LSC 0.148649 11 0 59 3 no 1.000000 2 1.000000 NA 1.000000 72.700000 psbL gene psbL psbL 82481 82600 -1 120 LSC 0.016667 2 0 1 38 no 1.000000 2 1.000000 NA 1.000000 47.200000 IGS_118 igs psbL|psbF psbL-psbF 82601 82611 0 11 LSC 0.000000 0 0 86 27 no 0.000000 1 0.000000 NA 1.000000 20.800000 psbF gene psbF psbF 82612 82743 -1 132 LSC 0.060606 8 0 97 0 no 1.000000 2 1.000000 NA 1.000000 67.600000 IGS_119 igs psbF|psbE psbF-psbE 82744 82745 0 2 LSC 1.000000 2 0 44 81 no 1.000000 2 1.000000 NA 1.000000 75.800000 psbE gene psbE psbE 82746 82997 -1 252 LSC 0.047619 12 0 0 1 no 1.000000 2 1.000000 NA 1.000000 64.900000 IGS_120 igs psbE|trnG(tcc) psbE-trnG(tcc) 82998 83060 0 63 LSC 0.111111 7 0 68 80 no 1.000000 2 1.000000 NA 1.000000 77.600000 trnG(tcc) tRNA trnG(tcc) trnG(tcc) 83061 83131 -1 71 LSC 0.000000 0 0 3 9 no 0.000000 1 0.000000 NA 1.000000 19.000000 IGS_121 igs trnG(tcc)|ycf4 trnG(tcc)-ycf4 83132 83183 0 52 LSC 0.115385 6 0 74 3 no 1.000000 2 1.000000 NA 1.000000 72.700000 ycf4 gene ycf4 ycf4 83184 83777 -1 594 LSC 0.159933 95 0 0 3 no 1.000000 2 1.000000 NA 1.000000 78.600000 IGS_122 igs ycf4|ycf49 ycf4-ycf49 83778 83779 0 2 LSC 0.000000 0 0 12 1 no 0.000000 1 0.000000 NA 1.000000 18.800000 ycf49 gene ycf49 ycf49 83780 84067 -1 288 LSC 0.135417 39 0 14 4 no 1.000000 2 1.000000 NA 1.000000 72.800000 IGS_123 igs ycf49|petL ycf49-petL 84068 84101 0 34 LSC 0.290323 9 3 14 6 no 1.000000 2 1.000000 NA 0.911765 76.700000 petL gene petL petL 84102 84197 -1 96 LSC 0.083333 8 0 4 13 no 1.000000 2 1.000000 NA 1.000000 70.700000 IGS_124 igs petL|psaL petL-psaL 84198 84362 0 165 LSC 0.099379 16 4 11 20 no 1.000000 2 1.000000 NA 0.975758 75.300000 psaL gene psaL psaL 84363 84911 1 549 LSC 0.067395 37 0 47 0 no 1.000000 2 1.000000 NA 1.000000 73.600000 IGS_125 igs psaL|trnY(gta) psaL-trnY(gta) 84912 85019 0 108 LSC 0.285714 30 3 30 82 no 1.000000 2 1.000000 NA 0.972222 77.400000 trnY(gta) tRNA trnY(gta) trnY(gta) 85020 85101 1 82 LSC 0.000000 0 0 6 0 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_126 igs trnY(gta)|ilvB trnY(gta)-ilvB 85102 85117 0 16 LSC 0.250000 4 0 88 3 no 1.000000 2 1.000000 NA 1.000000 72.700000 ilvB gene ilvB ilvB 85118 86887 -1 1770 LSC 0.135593 240 0 0 2 no 1.000000 2 1.000000 NA 1.000000 78.200000 IGS_127 igs ilvB|rpl35 ilvB-rpl35 86888 87094 0 207 LSC 0.132353 27 3 21 23 no 1.000000 2 1.000000 NA 0.985507 75.500000 rpl35 gene rpl35 rpl35 87095 87283 1 189 LSC 0.132275 25 0 8 36 no 1.000000 2 1.000000 NA 1.000000 73.100000 IGS_128 igs rpl35|rpl20 rpl35-rpl20 87284 87284 0 1 LSC 0.000000 0 0 0 35 no 0.000000 1 0.000000 NA 1.000000 18.800000 rpl20 gene rpl20 rpl20 87285 87647 1 363 LSC 0.137741 50 0 1 3 no 1.000000 2 1.000000 NA 1.000000 73.900000 IGS_129 igs rpl20|rpl19 rpl20-rpl19 87648 87661 0 14 IRa 0.214286 3 0 0 14 no 1.000000 2 1.000000 NA 1.000000 72.500000 rpl19 gene rpl19 rpl19 87662 88039 1 378 IRa 0.129630 49 0 1 18 no 1.000000 2 1.000000 NA 1.000000 74.200000 IGS_130 igs rpl19|thiG rpl19-thiG 88040 88040 0 1 IRa 0.000000 0 0 54 17 no 0.000000 1 0.000000 NA 1.000000 20.000000 thiG gene thiG thiG 88041 88850 1 810 IRa 0.090123 73 0 55 30 yes 1.000000 2 1.000000 NA 1.000000 79.800000 IGS_131 igs thiG|psaJ thiG-psaJ 88851 88874 0 24 IRa 0.000000 0 0 3 6 no 0.000000 1 0.000000 NA 1.000000 19.000000 psaJ gene psaJ psaJ 88875 89009 -1 135 IRa 0.111111 15 0 27 2 no 1.000000 2 1.000000 NA 1.000000 72.600000 IGS_132 igs psaJ|psaC psaJ-psaC 89010 89031 0 22 IRa 0.227273 5 0 17 23 no 1.000000 2 1.000000 NA 1.000000 73.800000 psaC gene psaC psaC 89032 89277 -1 246 IRa 0.109756 27 0 7 22 no 1.000000 2 1.000000 NA 1.000000 73.000000 IGS_133 igs psaC|rrn5 psaC-rrn5 89278 89353 0 76 IRa 0.152778 11 4 23 45 no 1.000000 2 1.000000 NA 0.947368 79.000000 rrn5 rRNA rrn5 rrn5 89354 89467 -1 114 IRa 0.017544 2 0 16 29 no 1.000000 2 1.000000 NA 1.000000 48.800000 IGS_134 igs rrn5|rnl rrn5-rnl 89468 89527 0 60 IRa 0.050000 3 0 18 24 no 1.000000 2 1.000000 NA 1.000000 67.600000 rnl rRNA rnl rnl 89528 92473 -1 2946 IRa 0.017001 50 5 2 6 no 1.000000 2 1.000000 NA 0.998303 50.800000 IGS_135 igs rnl|trnA(tgc) rnl-trnA(tgc) 92474 92515 0 42 IRa 0.071429 3 0 69 156 no 1.000000 2 1.000000 NA 1.000000 74.100000 trnA(tgc) tRNA trnA(tgc) trnA(tgc) 92516 92588 -1 73 IRa 0.000000 0 0 18 83 no 0.000000 1 0.000000 NA 1.000000 20.100000 IGS_136 igs trnA(tgc)|trnI(gat) trnA(tgc)-trnI(gat) 92589 92591 0 3 IRa 0.000000 0 0 91 80 no 0.000000 1 0.000000 NA 1.000000 24.800000 trnI(gat) tRNA trnI(gat) trnI(gat) 92592 92665 -1 74 IRa 0.000000 0 0 94 6 no 0.000000 1 0.000000 NA 1.000000 19.200000 IGS_137 igs trnI(gat)|rns trnI(gat)-rns 92666 92733 0 68 IRa 0.071429 4 12 168 276 yes 1.000000 2 1.000000 NA 0.823529 81.200000 rns rRNA rns rns 92734 94212 -1 1479 IRa 0.006761 10 0 26 48 no 1.000000 2 1.000000 NA 1.000000 49.600000 IGS_138 igs rns|clpC_B rns-clpC_B 94213 94526 0 314 IRa 0.153094 47 7 72 5 no 1.000000 2 1.000000 NA 0.977707 75.300000 clpC_B gene clpC_B clpC_B 94527 95864 1 1338 IRa 0.161798 216 3 12 0 no 1.000000 2 1.000000 NA 0.997758 79.000000 IGS_139 igs clpC_B|psbV clpC_B-psbV 95865 95949 0 85 IRa 0.246914 20 4 0 3 no 1.000000 2 1.000000 NA 0.952941 77.100000 psbV gene psbV psbV 95950 96429 1 480 IRa 0.075000 36 0 27 19 no 1.000000 2 1.000000 NA 1.000000 74.500000 IGS_140 igs psbV|petJ psbV-petJ 96430 96471 0 42 IRa 0.071429 3 0 30 15 no 1.000000 2 1.000000 NA 1.000000 70.100000 petJ gene petJ petJ 96472 96807 1 336 IRa 0.077381 26 0 1 10 no 1.000000 2 1.000000 NA 1.000000 70.500000 IGS_141 igs petJ|psaA petJ-psaA 96808 96943 0 136 IRa 0.080882 11 0 9 83 no 1.000000 2 1.000000 NA 1.000000 70.800000 psaA gene psaA psaA 96944 99184 1 2241 SSC 0.091031 204 0 43 22 no 1.000000 2 1.000000 NA 1.000000 77.700000 IGS_142 igs psaA|psaB psaA-psaB 99185 99201 0 17 SSC 0.000000 0 0 54 5 no 0.000000 1 0.000000 NA 1.000000 19.100000 psaB gene psaB psaB 99202 101412 1 2211 SSC 0.115332 255 0 71 19 no 1.000000 2 1.000000 NA 1.000000 78.700000 IGS_143 igs psaB|rps14 psaB-rps14 101413 101484 0 72 SSC 0.152778 11 0 30 12 no 1.000000 2 1.000000 NA 1.000000 73.400000 rps14 gene rps14 rps14 101485 101787 1 303 SSC 0.108911 33 0 5 7 no 1.000000 2 1.000000 NA 1.000000 72.900000 IGS_144 igs rps14|petG rps14-petG 101788 101869 0 82 SSC 0.230769 18 4 15 18 no 1.000000 2 1.000000 NA 0.951220 78.400000 petG gene petG petG 101870 101974 -1 105 SSC 0.057143 6 0 2 1 no 1.000000 2 1.000000 NA 1.000000 67.200000 IGS_145 igs petG|psbK petG-psbK 101975 102007 0 33 SSC 0.030303 1 0 44 33 no 1.000000 2 1.000000 NA 1.000000 57.400000 psbK gene psbK psbK 102008 102142 -1 135 SSC 0.029630 4 0 31 36 no 1.000000 2 1.000000 NA 1.000000 56.900000 IGS_146 igs psbK|psbZ psbK-psbZ 102143 102343 0 201 SSC 0.074627 15 0 47 50 no 1.000000 2 1.000000 NA 1.000000 72.900000 psbZ gene psbZ psbZ 102344 102529 1 186 SSC 0.053763 10 0 116 75 no 1.000000 2 1.000000 NA 1.000000 72.300000 trnT(tgt) tRNA trnT(tgt) trnT(tgt) 102530 102602 -1 73 SSC 0.000000 0 0 21 2 no 0.000000 1 0.000000 NA 1.000000 18.900000 IGS_148 igs trnT(tgt)|trnL(tag) trnT(tgt)-trnL(tag) 102603 102662 0 60 SSC 0.137931 8 2 94 30 no 1.000000 2 1.000000 NA 0.966667 78.000000 trnL(tag) tRNA trnL(tag) trnL(tag) 102663 102744 -1 82 SSC 0.012195 1 0 1 3 no 1.000000 2 1.000000 NA 1.000000 44.600000 IGS_149 igs trnL(tag)|rpl32 trnL(tag)-rpl32 102745 102921 0 177 SSC 0.180791 32 0 51 8 no 1.000000 2 1.000000 NA 1.000000 73.100000 rpl32 gene rpl32 rpl32 102922 103089 1 168 SSC 0.136905 23 0 2 2 no 1.000000 2 1.000000 NA 1.000000 72.600000 IGS_150 igs rpl32|trnP(tgg) rpl32-trnP(tgg) 103090 103111 0 22 SSC 0.545455 12 0 6 75 no 1.000000 2 1.000000 NA 1.000000 73.000000 trnP(tgg) tRNA trnP(tgg) trnP(tgg) 103112 103185 -1 74 SSC 0.000000 0 0 0 1 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_151 igs trnP(tgg)|acpP trnP(tgg)-acpP 103186 103265 0 80 SSC 0.194805 15 3 74 3 no 1.000000 2 1.000000 NA 0.962500 76.400000 acpP gene acpP acpP 103266 103562 -1 297 SSC 0.138047 41 0 12 11 no 1.000000 2 1.000000 NA 1.000000 73.300000 IGS_152 igs acpP|trnR(ccg) acpP-trnR(ccg) 103563 103943 0 381 SSC 0.289474 88 77 4 74 no 1.000000 2 1.000000 NA 0.797900 75.100000 trnR(ccg) tRNA trnR(ccg) trnR(ccg) 103944 104016 1 73 SSC 0.000000 0 0 0 1 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_153 igs trnR(ccg)|ssrA trnR(ccg)-ssrA 104017 104018 0 2 SSC 0.500000 1 0 73 26 no 1.000000 2 1.000000 NA 1.000000 74.400000 ssrA gene ssrA ssrA 104019 104338 1 320 SSC 0.214511 68 3 0 5 no 1.000000 2 1.000000 NA 0.990625 73.800000 IGS_154 igs ssrA|trnI(cat) ssrA-trnI(cat) 104339 104347 0 9 SSC 0.111111 1 0 14 52 no 1.000000 2 1.000000 NA 1.000000 73.600000 trnI(cat) tRNA trnI(cat) trnI(cat) 104348 104433 1 86 SSC 0.011628 1 0 3 0 no 1.000000 2 1.000000 NA 1.000000 44.200000 IGS_155 igs trnI(cat)|psaF trnI(cat)-psaF 104434 104471 0 38 SSC 0.111111 4 2 33 4 no 1.000000 2 1.000000 NA 0.947368 77.600000 psaF gene psaF psaF 104472 105032 1 561 SSC 0.083779 47 0 3 20 no 1.000000 2 1.000000 NA 1.000000 76.100000 IGS_156 igs psaF|psbX psaF-psbX 105033 105090 0 58 SSC 0.052632 3 1 33 32 no 1.000000 2 1.000000 NA 0.982759 70.500000 psbX gene psbX psbX 105091 105216 1 126 SSC 0.031746 4 0 1 41 no 1.000000 2 1.000000 NA 1.000000 55.800000 IGS_157 igs psbX|ycf66 psbX-ycf66 105217 105234 0 18 SSC 0.000000 0 0 63 23 no 0.000000 1 0.000000 NA 1.000000 20.500000 ycf66 gene ycf66 ycf66 105235 105540 1 306 SSC 0.127451 39 0 81 1 no 1.000000 2 1.000000 NA 1.000000 72.700000 IGS_158 igs ycf66|chlB ycf66-chlB 105541 105606 0 66 SSC 0.242424 16 0 10 23 no 1.000000 2 1.000000 NA 1.000000 73.200000 chlB gene chlB chlB 105607 107133 1 1527 SSC 0.149312 228 0 2 0 no 1.000000 2 1.000000 NA 1.000000 78.700000 IGS_159 igs chlB|clpN chlB-clpN 107134 107150 0 17 SSC 0.235294 4 0 0 8 no 1.000000 2 1.000000 NA 1.000000 72.500000 clpN gene clpN clpN 107151 107672 1 522 SSC 0.289272 151 0 7 1 yes 1.000000 2 1.000000 NA 1.000000 77.200000 IGS_160 igs clpN|trnN(gtt) clpN-trnN(gtt) 107673 107712 0 40 SSC 0.179487 7 1 4 82 no 1.000000 2 1.000000 NA 0.975000 75.200000 trnN(gtt) tRNA trnN(gtt) trnN(gtt) 107713 107784 1 72 SSC 0.000000 0 0 10 10 no 0.000000 1 0.000000 NA 1.000000 19.500000 IGS_161 igs trnN(gtt)|ycf59 trnN(gtt)-ycf59 107785 107928 0 144 SSC 0.222222 32 0 82 18 no 1.000000 2 1.000000 NA 1.000000 73.800000 ycf59 gene ycf59 ycf59 107929 108990 1 1062 SSC 0.111111 118 0 2 1 no 1.000000 2 1.000000 NA 1.000000 78.800000 IGS_162 igs ycf59|chlI ycf59-chlI 108991 109123 0 133 SSC 0.357724 44 10 6 0 no 1.000000 2 1.000000 NA 0.924812 76.600000 chlI gene chlI chlI 109124 110308 -1 1185 SSC 0.150211 178 0 6 8 yes 1.000000 2 1.000000 NA 1.000000 79.200000 IGS_163 igs chlI|psaM chlI-psaM 110309 110416 0 108 SSC 0.128713 13 7 32 18 no 1.000000 2 1.000000 NA 0.935185 78.300000 psaM gene psaM psaM 110417 110509 -1 93 SSC 0.043011 4 0 0 5 no 1.000000 2 1.000000 NA 1.000000 62.200000 IGS_164 igs psaM|psbC psaM-psbC 110510 110552 0 43 SSC 0.069767 3 0 33 3 no 1.000000 2 1.000000 NA 1.000000 68.900000 psbC gene psbC psbC 110553 111962 -1 1410 SSC 0.092908 131 0 10 13 no 1.000000 2 1.000000 NA 1.000000 78.600000 psbD gene psbD psbD 111910 112980 -1 1071 SSC 0.069094 74 0 18 12 no 1.000000 2 1.000000 NA 1.000000 75.800000 IGS_166 igs psbD|ycf34 psbD-ycf34 112981 113178 0 198 SSC 0.201220 33 34 86 5 no 1.000000 2 1.000000 NA 0.828283 74.300000 ycf34 gene ycf34 ycf34 113179 113403 -1 225 SSC 0.208889 47 0 1 0 no 1.000000 2 1.000000 NA 1.000000 72.500000 IGS_167 igs ycf34|trnF(gaa) ycf34-trnF(gaa) 113404 113470 0 67 SSC 0.447761 30 0 12 74 no 1.000000 2 1.000000 NA 1.000000 73.400000 trnF(gaa) tRNA trnF(gaa) trnF(gaa) 113471 113543 -1 73 SSC 0.000000 0 0 0 1 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_168 igs trnF(gaa)|trnC(gca) trnF(gaa)-trnC(gca) 113544 113662 0 119 SSC 0.293578 32 10 73 44 yes 1.000000 2 1.000000 NA 0.915966 79.700000 trnC(gca) tRNA trnC(gca) trnC(gca) 113663 113733 1 71 SSC 0.028169 2 0 6 0 no 1.000000 2 1.000000 NA 1.000000 53.700000 IGS_169 igs trnC(gca)|trnS(gct) trnC(gca)-trnS(gct) 113734 113786 0 53 SSC 0.414634 17 12 16 35 no 1.000000 2 1.000000 NA 0.773585 73.600000 trnS(gct) tRNA trnS(gct) trnS(gct) 113787 113875 -1 89 SSC 0.011236 1 0 4 2 no 1.000000 2 1.000000 NA 1.000000 44.100000 IGS_170 igs trnS(gct)|trnM(cat) trnS(gct)-trnM(cat) 113876 113878 0 3 SSC 0.333333 1 0 53 75 no 1.000000 2 1.000000 NA 1.000000 76.500000 trnM(cat) tRNA trnM(cat) trnM(cat) 113879 113951 -1 73 SSC 0.000000 0 0 0 2 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_171 igs trnM(cat)|dnaK trnM(cat)-dnaK 113952 114129 0 178 SSC 0.263473 44 11 73 8 no 1.000000 2 1.000000 NA 0.938202 77.600000 dnaK gene dnaK dnaK 114130 115938 1 1809 SSC 0.147043 266 0 0 1 no 1.000000 2 1.000000 NA 1.000000 78.100000 IGS_172 igs dnaK|petD dnaK-petD 115939 116109 0 171 SSC 0.366864 62 2 0 6 no 1.000000 2 1.000000 NA 0.988304 73.600000 petD gene petD petD 116110 116592 -1 483 SSC 0.099379 48 0 1 1 no 1.000000 2 1.000000 NA 1.000000 76.300000 IGS_173 igs petD|petB petD-petB 116593 116625 0 33 SSC 0.363636 12 0 42 9 no 1.000000 2 1.000000 NA 1.000000 73.200000 petB gene petB petB 116626 117273 -1 648 SSC 0.095679 62 0 0 13 no 1.000000 2 1.000000 NA 1.000000 78.200000 IGS_174 igs petB|cbbX petB-cbbX 117274 117330 0 57 SSC 0.196429 11 1 17 3 no 1.000000 2 1.000000 NA 0.982456 74.400000 cbbX gene cbbX cbbX 117331 118353 -1 1023 SSC 0.158824 162 3 6 1 no 1.000000 2 1.000000 NA 0.997067 79.100000 IGS_175 igs cbbX|trnL(taa) cbbX-trnL(taa) 118354 118544 0 191 SSC 0.317204 59 5 3 75 no 1.000000 2 1.000000 NA 0.973822 75.300000 trnL(taa)_part1 tRNA trnL(taa) trnL(taa) 118545 118581 1 37 SSC 0.000000 0 0 1 38 no 0.000000 1 0.000000 NA 1.000000 18.800000 trnL(taa)_part2 tRNA trnL(taa) trnL(taa) 118791 118838 1 48 SSC 0.020833 1 0 15 0 no 1.000000 2 1.000000 NA 1.000000 49.500000 IGS_178 igs trnL(taa)|ycf95 trnL(taa)-ycf95 118839 118995 0 157 SSC 0.281481 38 22 33 8 no 1.000000 2 1.000000 NA 0.859873 75.400000 ycf95 gene ycf95 ycf95 118996 119397 1 402 SSC 0.203125 78 18 1 24 no 1.000000 2 1.000000 NA 0.955224 79.000000 IGS_179 igs ycf95|trnW(cca) ycf95-trnW(cca) 119398 119544 0 147 SSC 0.203704 22 39 4 74 no 1.000000 2 1.000000 NA 0.734694 71.600000 trnW(cca) tRNA trnW(cca) trnW(cca) 119545 119617 1 73 SSC 0.000000 0 0 8 1 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_180 igs trnW(cca)|rpl11 trnW(cca)-rpl11 119618 52 0 116 SSC 0.245098 25 14 81 23 no 1.000000 2 1.000000 NA 0.879310 77.100000