feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH(GUG) tRNA trnH(GUG) trnH(GUG) 1 70 -1 70 LSC 0.124378 12 18 105 24 no 1.000000 3 1.000000 0.151646 0.957143 76.900000 IGS_001 igs trnH(GUG)|psbA trnH(GUG)-psbA 71 295 0 225 LSC 0.019520 6 4 37 12 no 1.000000 3 1.000000 0.016584 0.986667 52.200000 psbA gene psbA psbA 296 1357 -1 1062 LSC 0.003139 5 0 88 58 yes 0.333333 2 0.500000 0.003139 1.000000 37.600000 IGS_002 igs psbA|trnK(UUU) psbA-trnK(UUU) 1358 1595 0 238 LSC 0.002837 1 27 300 89 no 1.000000 3 1.000000 0.003160 0.987395 50.800000 trnK(UUU)_part2 tRNA trnK(UUU) trnK(UUU) 1596 1630 -1 35 LSC 0.000000 0 0 179 54 no 0.000000 1 0.000000 0.000000 1.000000 22.800000 matK gene matK matK 1937 3469 -1 1533 LSC 0.003044 7 0 46 16 no 0.333333 2 0.500000 0.003044 1.000000 34.300000 IGS_005 igs matK|trnK(UUU) matK-trnK(UUU) 3470 4176 0 707 LSC 0.024148 18 59 69 37 yes 1.000000 3 1.000000 0.010189 0.995757 65.900000 trnK(UUU)_part1 tRNA trnK(UUU) trnK(UUU) 4177 4213 -1 37 LSC 0.000000 0 0 146 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_006 igs trnK(UUU)|rps16 trnK(UUU)-rps16 4214 4773 0 560 LSC 0.010909 7 44 183 14 no 1.000000 3 1.000000 0.006300 0.982143 55.500000 rps16 gene rps16 rps16 4774 5903 -1 1130 LSC 0.015206 24 26 23 110 no 1.000000 3 1.000000 0.013539 0.989381 57.400000 IGS_007 igs rps16|trnQ(UUG) rps16-trnQ(UUG) 5904 7697 0 1794 LSC 0.022710 56 83 84 137 yes 1.000000 3 1.000000 0.019995 0.989967 68.600000 trnQ(UUG) tRNA trnQ(UUG) trnQ(UUG) 7698 7769 -1 72 LSC 0.000000 0 0 28 65 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_008 igs trnQ(UUG)|psbK trnQ(UUG)-psbK 7770 8117 0 348 LSC 0.005747 3 0 100 20 no 0.333333 2 0.500000 0.005747 1.000000 31.200000 psbK gene psbK psbK 8118 8306 1 189 LSC 0.007055 2 0 160 193 no 0.333333 2 0.500000 0.007055 1.000000 41.500000 IGS_009 igs psbK|psbI psbK-psbI 8307 8696 0 390 LSC 0.008547 5 0 136 119 no 0.333333 2 0.500000 0.008547 1.000000 41.200000 psbI gene psbI psbI 8697 8807 1 111 LSC 0.000000 0 0 26 8 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_010 igs psbI|trnS(GCU) psbI-trnS(GCU) 8808 8946 0 139 LSC 0.009592 2 0 137 261 no 0.333333 2 0.500000 0.009592 1.000000 41.400000 trnS(GCU) tRNA trnS(GCU) trnS(GCU) 8947 9034 -1 88 LSC 0.000000 0 0 76 173 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 IGS_011 igs trnS(GCU)|trnG(UCC) trnS(GCU)-trnG(UCC) 9035 9389 0 355 LSC 0.014706 5 61 164 45 no 1.000000 3 1.000000 0.004902 0.957746 53.900000 trnG(UCC)_part1 tRNA trnG(UCC) trnG(UCC) 9390 9412 1 23 LSC 0.000000 0 0 162 22 no 0.000000 1 0.000000 0.000000 1.000000 20.400000 trnG(UCC)_part2 tRNA trnG(UCC) trnG(UCC) 10125 10173 1 49 LSC 0.000000 0 0 300 297 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_014 igs trnG(UCC)|trnR(UCU) trnG(UCC)-trnR(UCU) 10174 10394 0 221 LSC 0.000000 0 0 300 76 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 trnR(UCU) tRNA trnR(UCU) trnR(UCU) 10395 10466 1 72 LSC 0.000000 0 0 300 4 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_015 igs trnR(UCU)|atpA trnR(UCU)-atpA 10467 10623 0 157 LSC 0.012739 3 0 300 84 no 0.333333 2 0.500000 0.012739 1.000000 39.400000 atpA gene atpA atpA 10624 12165 -1 1542 LSC 0.000865 2 0 5 300 no 0.333333 2 0.500000 0.000865 1.000000 32.100000 IGS_016 igs atpA|atpF atpA-atpF 12166 12227 0 62 LSC 0.000000 0 0 194 300 no 0.000000 1 0.000000 0.000000 1.000000 33.300000 atpF gene atpF atpF 12228 13490 -1 1263 LSC 0.001584 3 1 256 96 no 0.333333 2 0.500000 0.001585 1.000000 39.600000 IGS_017 igs atpF|atpH atpF-atpH 13491 13919 0 429 LSC 0.021756 14 0 247 300 no 0.333333 2 0.500000 0.021756 1.000000 56.600000 atpH gene atpH atpH 13920 14165 -1 246 LSC 0.000000 0 0 188 295 no 0.000000 1 0.000000 0.000000 1.000000 32.900000 IGS_018 igs atpH|atpI atpH-atpI 14166 14727 0 562 LSC 0.001186 1 0 300 7 no 0.333333 2 0.500000 0.001186 1.000000 31.700000 atpI gene atpI atpI 14728 15474 -1 747 LSC 0.000892 1 0 266 7 no 0.333333 2 0.500000 0.000892 1.000000 32.300000 IGS_019 igs atpI|rps2 atpI-rps2 15475 15670 0 196 LSC 0.006803 2 0 300 69 no 0.333333 2 0.500000 0.006803 1.000000 34.500000 rps2 gene rps2 rps2 15671 16381 -1 711 LSC 0.005626 6 0 9 106 no 0.333333 2 0.500000 0.005626 1.000000 35.500000 IGS_020 igs rps2|rpoC2 rps2-rpoC2 16382 16584 0 203 LSC 0.003284 1 5 179 100 no 0.333333 2 0.500000 0.003367 1.000000 37.400000 rpoC2 gene rpoC2 rpoC2 16585 20649 -1 4065 LSC 0.002624 16 0 96 33 no 0.333333 2 0.500000 0.002624 1.000000 30.600000 IGS_021 igs rpoC2|rpoC1 rpoC2-rpoC1 20650 20831 0 182 LSC 0.014652 4 0 300 252 no 0.333333 2 0.500000 0.014652 1.000000 49.300000 rpoC1 gene rpoC1 rpoC1 20832 23573 -1 2742 LSC 0.004863 20 8 68 12 no 0.333333 2 0.500000 0.004877 1.000000 33.000000 IGS_022 igs rpoC1|rpoB rpoC1-rpoB 23574 23599 0 26 LSC 0.025641 1 0 29 300 no 0.333333 2 0.500000 0.025641 1.000000 43.500000 rpoB gene rpoB rpoB 23600 26821 -1 3222 LSC 0.001448 7 0 13 240 no 1.000000 3 1.000000 0.001448 1.000000 42.200000 IGS_023 igs rpoB|trnC(GCA) rpoB-trnC(GCA) 26822 27657 0 836 LSC 0.004785 6 0 104 97 no 0.333333 2 0.500000 0.004785 1.000000 41.600000 trnC(GCA) tRNA trnC(GCA) trnC(GCA) 27658 27730 1 73 LSC 0.000000 0 0 31 24 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_024 igs trnC(GCA)|petN trnC(GCA)-petN 27731 28642 0 912 LSC 0.012427 17 0 104 300 no 1.000000 3 1.000000 0.012427 1.000000 59.500000 petN gene petN petN 28643 28732 1 90 LSC 0.000000 0 0 124 219 no 0.000000 1 0.000000 0.000000 1.000000 28.000000 IGS_025 igs petN|psbM petN-psbM 28733 28921 0 189 LSC 0.000000 0 0 214 30 no 0.000000 1 0.000000 0.000000 1.000000 21.000000 psbM gene psbM psbM 28922 29038 -1 117 LSC 0.005698 1 0 300 184 no 0.333333 2 0.500000 0.005698 1.000000 42.400000 IGS_026 igs psbM|trnD(GUC) psbM-trnD(GUC) 29039 29764 0 726 LSC 0.039080 31 44 86 164 yes 1.000000 3 1.000000 0.018431 0.998623 78.700000 trnD(GUC) tRNA trnD(GUC) trnD(GUC) 29765 29838 -1 74 LSC 0.000000 0 0 132 90 no 0.000000 1 0.000000 0.000000 1.000000 25.500000 IGS_027 igs trnD(GUC)|trnY(GUA) trnD(GUC)-trnY(GUA) 29839 30185 0 347 LSC 0.079314 32 63 206 112 yes 1.000000 3 1.000000 0.065847 0.896254 82.900000 trnY(GUA) tRNA trnY(GUA) trnY(GUA) 30186 30269 -1 84 LSC 0.000000 0 0 6 28 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_028 igs trnY(GUA)|trnE(UUC) trnY(GUA)-trnE(UUC) 30270 30323 0 54 LSC 0.012579 1 1 90 79 no 1.000000 3 1.000000 0.012579 0.981481 53.100000 trnE(UUC) tRNA trnE(UUC) trnE(UUC) 30324 30400 -1 77 LSC 0.000000 0 4 25 2 no 0.333333 2 0.500000 0.000000 0.948052 29.700000 IGS_029 igs trnE(UUC)|trnT(GGU) trnE(UUC)-trnT(GGU) 30401 31183 0 783 LSC 0.007663 9 28 102 268 no 0.333333 2 0.500000 0.007947 1.000000 47.900000 trnT(GGU) tRNA trnT(GGU) trnT(GGU) 31184 31255 1 72 LSC 0.000000 0 0 79 196 no 0.000000 1 0.000000 0.000000 1.000000 24.700000 IGS_030 igs trnT(GGU)|psbD trnT(GGU)-psbD 31256 32430 0 1175 LSC 0.009770 15 65 151 300 yes 1.000000 3 1.000000 0.007756 0.987234 66.400000 psbD gene psbD psbD 32431 33492 1 1062 LSC 0.000628 1 0 91 42 no 0.333333 2 0.500000 0.000628 1.000000 34.800000 psbC gene psbC psbC 33440 34864 1 1425 LSC 0.001871 4 0 300 19 no 0.333333 2 0.500000 0.001871 1.000000 33.900000 IGS_032 igs psbC|trnS(UGA) psbC-trnS(UGA) 34865 35074 0 210 LSC 0.006349 2 0 300 300 no 0.333333 2 0.500000 0.006349 1.000000 44.000000 trnS(UGA) tRNA trnS(UGA) trnS(UGA) 35075 35167 -1 93 LSC 0.000000 0 0 129 215 no 0.000000 1 0.000000 0.000000 1.000000 28.400000 IGS_033 igs trnS(UGA)|psbZ trnS(UGA)-psbZ 35168 35493 0 326 LSC 0.004090 2 8 222 43 no 0.333333 2 0.500000 0.004193 1.000000 34.200000 psbZ gene psbZ psbZ 35494 35682 1 189 LSC 0.003527 1 0 66 12 no 0.333333 2 0.500000 0.003527 1.000000 28.100000 IGS_034 igs psbZ|trnG(GCC) psbZ-trnG(GCC) 35683 36010 0 328 LSC 0.004065 2 5 145 93 no 0.333333 2 0.500000 0.004128 1.000000 36.900000 trnG(GCC) tRNA trnG(GCC) trnG(GCC) 36011 36081 1 71 LSC 0.000000 0 0 105 22 no 0.000000 1 0.000000 0.000000 1.000000 20.400000 IGS_035 igs trnG(GCC)|tRNA-fM(CAU) trnG(GCC)-tRNA-fM(CAU) 36082 36252 0 171 LSC 0.015595 4 0 176 201 no 1.000000 3 1.000000 0.015595 1.000000 60.600000 tRNA-fM(CAU) tRNA tRNA-fM(CAU) tRNA-fM(CAU) 36253 36326 -1 74 LSC 0.000000 0 0 35 127 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_036 igs tRNA-fM(CAU)|rps14 tRNA-fM(CAU)-rps14 36327 36468 0 142 LSC 0.004695 1 0 109 300 no 0.333333 2 0.500000 0.004695 1.000000 36.200000 rps14 gene rps14 rps14 36469 36771 -1 303 LSC 0.000000 0 0 14 75 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_037 igs rps14|psaB rps14-psaB 36772 36914 0 143 LSC 0.004662 1 0 300 129 no 0.333333 2 0.500000 0.004662 1.000000 37.600000 psaB gene psaB psaB 36915 39119 -1 2205 LSC 0.001209 4 0 67 300 no 1.000000 3 1.000000 0.001209 1.000000 48.100000 IGS_038 igs psaB|psaA psaB-psaA 39120 39147 0 28 LSC 0.000000 0 0 52 300 no 0.000000 1 0.000000 0.000000 1.000000 22.700000 psaA gene psaA psaA 39148 41400 -1 2253 LSC 0.000592 2 0 80 167 no 0.333333 2 0.500000 0.000592 1.000000 36.100000 IGS_039 igs psaA|ycf3 psaA-ycf3 41401 42067 0 667 LSC 0.012626 10 106 300 154 yes 1.000000 3 1.000000 0.008467 0.989505 67.200000 ycf3 gene ycf3 ycf3 42068 44020 -1 1953 LSC 0.004096 12 1 203 180 no 1.000000 3 1.000000 0.004098 1.000000 59.000000 IGS_040 igs ycf3|trnS(GGA) ycf3-trnS(GGA) 44021 44473 0 453 LSC 0.005887 4 0 300 300 no 0.333333 2 0.500000 0.005887 1.000000 46.900000 trnS(GGA) tRNA trnS(GGA) trnS(GGA) 44474 44560 1 87 LSC 0.000000 0 0 66 300 no 0.000000 1 0.000000 0.000000 1.000000 23.700000 IGS_041 igs trnS(GGA)|rps4 trnS(GGA)-rps4 44561 44728 0 168 LSC 0.000000 0 0 153 300 no 0.000000 1 0.000000 0.000000 1.000000 30.200000 rps4 gene rps4 rps4 44729 45334 -1 606 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_042 igs rps4|trnT(UGU) rps4-trnT(UGU) 45335 45703 0 369 LSC 0.000000 0 0 300 82 no 0.000000 1 0.000000 0.000000 1.000000 26.300000 trnT(UGU) tRNA trnT(UGU) trnT(UGU) 45704 45776 -1 73 LSC 0.000000 0 0 300 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_043 igs trnT(UGU)|trnL(UAA) trnT(UGU)-trnL(UAA) 45777 46297 0 521 LSC 0.008957 7 0 300 173 yes 1.000000 3 1.000000 0.008957 1.000000 60.800000 trnL(UAA)_part1 tRNA trnL(UAA) trnL(UAA) 46298 46332 1 35 LSC 0.000000 0 0 237 138 no 0.000000 1 0.000000 0.000000 1.000000 29.100000 trnL(UAA)_part2 tRNA trnL(UAA) trnL(UAA) 46833 46882 1 50 LSC 0.000000 0 0 182 269 no 0.000000 1 0.000000 0.000000 1.000000 32.400000 IGS_046 igs trnL(UAA)|trnF(GAA) trnL(UAA)-trnF(GAA) 46883 47273 0 391 LSC 0.006820 4 0 232 300 no 0.333333 2 0.500000 0.006820 1.000000 46.200000 trnF(GAA) tRNA trnF(GAA) trnF(GAA) 47274 47346 1 73 LSC 0.000000 0 0 20 270 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_047 igs trnF(GAA)|tRNA-Met(CAU) trnF(GAA)-tRNA-Met(CAU) 47347 48371 0 1025 LSC 0.013518 19 68 93 90 yes 1.000000 3 1.000000 0.012107 0.986341 64.100000 tRNA-Met(CAU) tRNA tRNA-Met(CAU) tRNA-Met(CAU) 48372 48444 1 73 LSC 0.000000 0 0 0 17 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_048 igs tRNA-Met(CAU)|atpE tRNA-Met(CAU)-atpE 48445 48658 0 214 LSC 0.018692 6 0 73 15 no 0.333333 2 0.500000 0.018692 1.000000 38.000000 atpE gene atpE atpE 48659 49051 -1 393 LSC 0.003393 2 0 123 169 no 1.000000 3 1.000000 0.003393 1.000000 50.800000 IGS_049 igs atpE|atpB atpE-atpB 49052 49109 0 58 LSC 0.000000 0 0 264 111 no 0.000000 1 0.000000 0.000000 1.000000 27.100000 atpB gene atpB atpB 49110 50543 -1 1434 LSC 0.001400 3 5 300 234 no 1.000000 3 1.000000 0.001400 0.996513 60.000000 IGS_050 igs atpB|rbcL atpB-rbcL 50544 51322 0 779 LSC 0.002567 3 0 300 300 no 0.333333 2 0.500000 0.002567 1.000000 47.900000 rbcL gene rbcL rbcL 51323 52750 1 1428 LSC 0.001401 3 0 300 151 no 0.333333 2 0.500000 0.001401 1.000000 43.500000 IGS_051 igs rbcL|accD rbcL-accD 52751 53410 0 660 LSC 0.003030 3 0 300 300 no 0.333333 2 0.500000 0.003030 1.000000 48.200000 accD gene accD accD 53411 54934 1 1524 LSC 0.000875 2 3 300 16 no 0.333333 2 0.500000 0.000877 1.000000 33.200000 IGS_052 igs accD|psaI accD-psaI 54935 55513 0 579 LSC 0.006908 6 4 249 122 no 1.000000 3 1.000000 0.006953 1.000000 57.700000 psaI gene psaI psaI 55514 55624 1 111 LSC 0.000000 0 0 300 11 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_053 igs psaI|ycf4 psaI-ycf4 55625 55982 0 358 LSC 0.007449 4 4 300 300 no 0.333333 2 0.500000 0.007533 1.000000 47.200000 ycf4 gene ycf4 ycf4 55983 56543 1 561 LSC 0.001188 1 0 241 151 no 0.333333 2 0.500000 0.001188 1.000000 42.500000 IGS_054 igs ycf4|cemA ycf4-cemA 56544 56943 0 400 LSC 0.003333 2 32 31 71 no 0.333333 2 0.500000 0.003623 1.000000 37.000000 cemA gene cemA cemA 56944 57639 1 696 LSC 0.000958 1 0 169 78 no 0.333333 2 0.500000 0.000958 1.000000 37.700000 IGS_055 igs cemA|petA cemA-petA 57640 57888 0 249 LSC 0.005355 2 0 300 300 no 1.000000 3 1.000000 0.005355 1.000000 55.900000 petA gene petA petA 57889 58857 1 969 LSC 0.000688 1 0 163 271 no 0.333333 2 0.500000 0.000688 1.000000 43.900000 IGS_056 igs petA|psbJ petA-psbJ 58858 59749 0 892 LSC 0.005979 8 8 300 156 no 0.333333 2 0.500000 0.006033 1.000000 47.800000 psbJ gene psbJ psbJ 59750 59872 -1 123 LSC 0.000000 0 0 91 33 no 0.000000 1 0.000000 0.000000 1.000000 21.200000 IGS_057 igs psbJ|psbL psbJ-psbL 59873 60019 0 147 LSC 0.009070 2 0 214 300 no 0.333333 2 0.500000 0.009070 1.000000 45.800000 psbL gene psbL psbL 60020 60136 -1 117 LSC 0.000000 0 0 63 300 no 0.000000 1 0.000000 0.000000 1.000000 23.500000 IGS_058 igs psbL|psbF psbL-psbF 60137 60158 0 22 LSC 0.000000 0 0 180 300 no 0.000000 1 0.000000 0.000000 1.000000 32.200000 psbF gene psbF psbF 60159 60278 -1 120 LSC 0.000000 0 0 202 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_059 igs psbF|psbE psbF-psbE 60279 60287 0 9 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psbE gene psbE psbE 60288 60539 -1 252 LSC 0.000000 0 0 300 202 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_060 igs psbE|petL psbE-petL 60540 61802 0 1263 LSC 0.011094 21 1 300 176 yes 1.000000 3 1.000000 0.011094 0.999208 64.100000 petL gene petL petL 61803 61898 1 96 LSC 0.000000 0 0 114 80 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 IGS_061 igs petL|petG petL-petG 61899 62071 0 173 LSC 0.011561 3 0 210 206 no 0.333333 2 0.500000 0.011561 1.000000 47.400000 petG gene petG petG 62072 62185 1 114 LSC 0.000000 0 0 20 92 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_062 igs petG|trnW(CCA) petG-trnW(CCA) 62186 62298 0 113 LSC 0.005900 1 0 134 113 no 0.333333 2 0.500000 0.005900 1.000000 37.200000 trnW(CCA) tRNA trnW(CCA) trnW(CCA) 62299 62372 -1 74 LSC 0.000000 0 0 20 39 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_063 igs trnW(CCA)|trnP(UGG) trnW(CCA)-trnP(UGG) 62373 62545 0 173 LSC 0.003854 1 0 94 98 no 0.333333 2 0.500000 0.003854 1.000000 34.500000 trnP(UGG) tRNA trnP(UGG) trnP(UGG) 62546 62619 -1 74 LSC 0.000000 0 0 133 24 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_064 igs trnP(UGG)|psaJ trnP(UGG)-psaJ 62620 62996 0 377 LSC 0.003537 2 7 207 92 no 0.333333 2 0.500000 0.003604 1.000000 37.900000 psaJ gene psaJ psaJ 62997 63137 1 141 LSC 0.004728 1 0 150 140 no 0.333333 2 0.500000 0.004728 1.000000 38.500000 IGS_065 igs psaJ|rpl33 psaJ-rpl33 63138 63445 0 308 LSC 0.006579 3 4 48 147 no 1.000000 3 1.000000 0.006579 0.987013 46.600000 rpl33 gene rpl33 rpl33 63446 63547 1 102 LSC 0.000000 0 0 6 45 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_066 igs rpl33|rps18 rpl33-rps18 63548 63796 0 249 LSC 0.005355 2 0 108 300 no 0.333333 2 0.500000 0.005355 1.000000 36.500000 rps18 gene rps18 rps18 63797 64075 1 279 LSC 0.000000 0 0 186 74 no 0.000000 1 0.000000 0.000000 1.000000 24.300000 IGS_067 igs rps18|rpl20 rps18-rpl20 64076 64283 0 208 LSC 0.006410 2 0 300 190 no 0.333333 2 0.500000 0.006410 1.000000 43.300000 rpl20 gene rpl20 rpl20 64284 64712 -1 429 LSC 0.003108 2 0 68 61 no 0.333333 2 0.500000 0.003108 1.000000 34.200000 IGS_068 igs rpl20|rps12 rpl20-rps12 64713 65534 0 822 LSC 0.004866 6 0 67 206 no 0.333333 2 0.500000 0.004866 1.000000 39.400000 rps12_part1 gene rps12 rps12 65535 65648 -1 114 LSC 0.000000 0 0 202 92 no 0.000000 1 0.000000 0.000000 1.000000 25.700000 IGS_069 igs rps12|clpP rps12-clpP 65649 65792 0 144 LSC 0.004630 1 0 300 1 no 0.333333 2 0.500000 0.004630 1.000000 28.000000 clpP gene clpP clpP 65793 67902 -1 2110 LSC 0.003791 12 2 51 167 no 1.000000 3 1.000000 0.003795 1.000000 48.800000 IGS_070 igs clpP|psbB clpP-psbB 67903 68360 0 458 LSC 0.002911 2 0 300 215 no 0.333333 2 0.500000 0.002911 1.000000 45.100000 psbB gene psbB psbB 68361 69887 1 1527 LSC 0.001310 3 0 116 300 no 0.333333 2 0.500000 0.001310 1.000000 40.700000 IGS_071 igs psbB|psbT psbB-psbT 69888 70070 0 183 LSC 0.000000 0 0 141 300 no 0.000000 1 0.000000 0.000000 1.000000 29.300000 psbT gene psbT psbT 70071 70190 1 120 LSC 0.000000 0 0 300 203 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_072 igs psbT|psbN psbT-psbN 70191 70248 0 58 LSC 0.000000 0 0 300 145 no 0.000000 1 0.000000 0.000000 1.000000 29.600000 psbN gene psbN psbN 70249 70380 -1 132 LSC 0.000000 0 0 300 13 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_073 igs psbN|psbH psbN-psbH 70381 70485 0 105 LSC 0.006349 1 0 300 230 no 0.333333 2 0.500000 0.006349 1.000000 44.000000 psbH gene psbH psbH 70486 70707 1 222 LSC 0.000000 0 0 91 8 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_074 igs psbH|petB psbH-petB 70708 70827 0 120 LSC 0.011111 2 0 300 172 no 0.333333 2 0.500000 0.011111 1.000000 45.000000 petB gene petB petB 70828 72189 1 1362 LSC 0.003426 7 0 5 108 no 0.333333 2 0.500000 0.003426 1.000000 33.800000 IGS_075 igs petB|petD petB-petD 72190 72360 0 171 LSC 0.003899 1 0 300 100 no 0.333333 2 0.500000 0.003899 1.000000 35.000000 petD gene petD petD 72361 73599 1 1239 LSC 0.003228 6 0 62 180 no 1.000000 3 1.000000 0.003228 1.000000 50.500000 IGS_076 igs petD|rpoA petD-rpoA 73600 73831 0 232 LSC 0.024155 5 75 300 1 no 1.000000 3 1.000000 0.008052 0.892241 51.600000 rpoA gene rpoA rpoA 73832 74833 -1 1002 LSC 0.005323 8 0 22 121 no 0.333333 2 0.500000 0.005323 1.000000 36.300000 IGS_077 igs rpoA|rps11 rpoA-rps11 74834 74912 0 79 LSC 0.000000 0 0 31 42 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 rps11 gene rps11 rps11 74913 75329 -1 417 LSC 0.004796 3 0 110 73 no 1.000000 3 1.000000 0.004796 1.000000 48.500000 IGS_078 igs rps11|rpl36 rps11-rpl36 75330 75442 0 113 LSC 0.017699 3 0 10 284 no 0.333333 2 0.500000 0.017699 1.000000 37.000000 rpl36 gene rpl36 rpl36 75443 75556 -1 114 LSC 0.000000 0 0 0 170 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_079 igs rpl36|infA rpl36-infA 75557 75726 0 170 LSC 0.000000 0 0 114 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 infA gene infA infA 75727 75949 -1 223 LSC 0.017937 6 1 284 57 no 1.000000 3 1.000000 0.018011 1.000000 53.700000 IGS_080 igs infA|rps8 infA-rps8 75950 76064 0 115 LSC 0.011594 2 1 67 128 no 0.333333 2 0.500000 0.011696 1.000000 38.400000 rps8 gene rps8 rps8 76065 76478 -1 414 LSC 0.001610 1 0 20 82 no 0.333333 2 0.500000 0.001610 1.000000 29.900000 IGS_081 igs rps8|rpl14 rps8-rpl14 76479 76624 0 146 LSC 0.004566 1 0 285 300 no 0.333333 2 0.500000 0.004566 1.000000 42.900000 rpl14 gene rpl14 rpl14 76625 76993 -1 369 LSC 0.001807 1 0 63 49 no 0.333333 2 0.500000 0.001807 1.000000 31.300000 IGS_082 igs rpl14|rpl16 rpl14-rpl16 76994 77118 0 125 LSC 0.005333 1 0 67 300 no 0.333333 2 0.500000 0.005333 1.000000 33.400000 rpl16 gene rpl16 rpl16 77119 78575 -1 1457 LSC 0.001373 3 0 75 300 no 0.333333 2 0.500000 0.001373 1.000000 37.800000 IGS_083 igs rpl16|rps3 rpl16-rps3 78576 78730 0 155 LSC 0.000000 0 0 209 297 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps3 gene rps3 rps3 78731 79396 -1 666 LSC 0.002002 2 0 300 119 no 0.333333 2 0.500000 0.002002 1.000000 41.500000 rpl22 gene rpl22 rpl22 79381 79857 -1 477 LSC 0.001398 1 0 300 39 no 0.333333 2 0.500000 0.001398 1.000000 32.500000 IGS_085 igs rpl22|rps19 rpl22-rps19 79858 79905 0 48 LSC 0.027778 2 0 300 299 no 0.333333 2 0.500000 0.027778 1.000000 57.700000 rps19 gene rps19 rps19 79906 80190 -1 285 LSC 0.000000 0 0 4 14 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_086 igs rps19|rpl2 rps19-rpl2 80191 80245 0 55 IRb 0.012121 1 0 289 300 no 0.333333 2 0.500000 0.012121 1.000000 47.700000 rpl2 gene rpl2 rpl2 80246 81716 -1 1471 IRb 0.000000 0 0 40 300 no 0.000000 1 0.000000 0.000000 1.000000 28.000000 rpl23 gene rpl23 rpl23 81662 82015 -1 354 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.900000 IGS_088 igs rpl23|trnI(CAU) rpl23-trnI(CAU) 82016 82180 0 165 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI(CAU) tRNA trnI(CAU) trnI(CAU) 82181 82254 -1 74 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_089 igs trnI(CAU)|ycf2 trnI(CAU)-ycf2 82255 82342 0 88 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf2 gene ycf2 ycf2 82343 88444 1 6102 IRb 0.000876 8 12 300 300 no 1.000000 3 1.000000 0.000876 0.998033 53.200000 IGS_090 igs ycf2|trnL(CAA) ycf2-trnL(CAA) 88445 89147 0 703 IRb 0.000000 0 8 300 222 no 1.000000 3 1.000000 0.000000 0.995733 60.000000 trnL(CAA) tRNA trnL(CAA) trnL(CAA) 89148 89227 -1 80 IRb 0.000000 0 0 300 142 no 0.000000 1 0.000000 0.000000 1.000000 29.400000 IGS_091 igs trnL(CAA)|ndhB trnL(CAA)-ndhB 89228 89747 0 520 IRb 0.001282 1 0 300 300 no 0.333333 2 0.500000 0.001282 1.000000 45.400000 ndhB gene ndhB ndhB 89748 92013 -1 2266 IRb 0.002059 7 1 300 300 no 0.333333 2 0.500000 0.002060 1.000000 46.000000 IGS_092 igs ndhB|rps7 ndhB-rps7 92014 92349 0 336 IRb 0.000000 0 0 92 300 no 0.000000 1 0.000000 0.000000 1.000000 26.400000 rps7 gene rps7 rps7 92350 92817 -1 468 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_093 igs rps7|rps12 rps7-rps12 92818 92878 0 61 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps12_part2 gene rps12 rps12 92879 93681 -1 803 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_094 igs rps12|trnV(GAC) rps12-trnV(GAC) 93682 95501 0 1820 IRb 0.002930 8 6 300 300 no 0.333333 2 0.500000 0.002940 1.000000 47.800000 trnV(GAC) tRNA trnV(GAC) trnV(GAC) 95502 95573 1 72 IRb 0.000000 0 0 290 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_095 igs trnV(GAC)|rrn16 trnV(GAC)-rrn16 95574 95794 0 221 IRb 0.000000 0 4 300 300 no 0.333333 2 0.500000 0.000000 1.000000 42.100000 rrn16 rRNA rrn16 rrn16 95795 97289 1 1495 IRb 0.000000 0 4 300 300 no 0.333333 2 0.500000 0.000000 0.997324 46.500000 IGS_096 igs rrn16|trnI(GAU) rrn16-trnI(GAU) 97290 97575 0 286 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI(GAU)_part1 tRNA trnI(GAU) trnI(GAU) 97576 97612 1 37 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI(GAU)_part2 tRNA trnI(GAU) trnI(GAU) 98516 98550 1 35 IRb 0.000000 0 0 300 244 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_099 igs trnI(GAU)|trnA(UGC) trnI(GAU)-trnA(UGC) 98551 98611 0 61 IRb 0.000000 0 0 300 183 no 0.000000 1 0.000000 0.000000 1.000000 32.500000 trnA(UGC)_part1 tRNA trnA(UGC) trnA(UGC) 98612 98649 1 38 IRb 0.000000 0 0 300 145 no 0.000000 1 0.000000 0.000000 1.000000 29.600000 trnA(UGC)_part2 tRNA trnA(UGC) trnA(UGC) 99453 99487 1 35 IRb 0.000000 0 0 300 64 no 0.000000 1 0.000000 0.000000 1.000000 23.500000 IGS_102 igs trnA(UGC)|rrn23 trnA(UGC)-rrn23 99488 99631 0 144 IRb 0.004630 1 0 300 300 no 0.333333 2 0.500000 0.004630 1.000000 43.000000 rrn23 rRNA rrn23 rrn23 99632 102450 1 2819 IRb 0.000000 0 0 79 300 no 0.000000 1 0.000000 0.000000 1.000000 28.200000 IGS_103 igs rrn23|rrn4.5 rrn23-rrn4.5 102451 102554 0 104 IRb 0.000000 0 0 300 207 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5 rRNA rrn4.5 rrn4.5 102555 102657 1 103 IRb 0.000000 0 0 300 104 no 0.000000 1 0.000000 0.000000 1.000000 26.600000 IGS_104 igs rrn4.5|rrn5 rrn4.5-rrn5 102658 102865 0 208 IRb 0.012821 3 3 300 300 yes 1.000000 3 1.000000 0.006457 1.000000 61.700000 rrn5 rRNA rrn5 rrn5 102866 102986 1 121 IRb 0.000000 0 0 97 300 no 0.000000 1 0.000000 0.000000 1.000000 26.000000 IGS_105 igs rrn5|trnR(ACG) rrn5-trnR(ACG) 102987 103225 0 239 IRb 0.000000 0 0 218 213 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnR(ACG) tRNA trnR(ACG) trnR(ACG) 103226 103299 1 74 IRb 0.000000 0 0 300 139 no 0.000000 1 0.000000 0.000000 1.000000 29.200000 IGS_106 igs trnR(ACG)|trnN(GUU) trnR(ACG)-trnN(GUU) 103300 103860 0 561 IRb 0.005942 5 0 300 300 no 0.333333 2 0.500000 0.005942 1.000000 49.200000 trnN(GUU) tRNA trnN(GUU) trnN(GUU) 103861 103932 -1 72 IRb 0.000000 0 0 18 277 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 IGS_107 igs trnN(GUU)|rpl32 trnN(GUU)-rpl32 103933 104298 0 366 IRb 0.001821 1 0 90 164 no 0.333333 2 0.500000 0.001821 1.000000 34.300000 rpl32 gene rpl32 rpl32 104299 104466 1 168 SSC 0.003968 1 0 88 45 no 0.333333 2 0.500000 0.003968 1.000000 30.900000 IGS_108 igs rpl32|trnL(UAG) rpl32-trnL(UAG) 104467 105033 0 567 SSC 0.028219 22 32 3 96 yes 1.000000 3 1.000000 0.024650 1.000000 66.500000 trnL(UAG) tRNA trnL(UAG) trnL(UAG) 105034 105113 1 80 SSC 0.000000 0 0 3 16 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_109 igs trnL(UAG)|ccsA trnL(UAG)-ccsA 105114 105218 0 105 SSC 0.006349 1 0 83 101 no 0.333333 2 0.500000 0.006349 1.000000 35.300000 ccsA gene ccsA ccsA 105219 106181 1 963 SSC 0.005538 8 1 88 41 no 0.333333 2 0.500000 0.005544 1.000000 38.000000 IGS_110 igs ccsA|psaC ccsA-psaC 106182 107494 0 1313 SSC 0.017276 34 11 117 228 yes 1.000000 3 1.000000 0.017380 0.999238 64.500000 psaC gene psaC psaC 107495 107740 -1 246 SSC 0.002710 1 0 157 1 no 0.333333 2 0.500000 0.002710 1.000000 26.800000 IGS_111 igs psaC|rps15 psaC-rps15 107741 108707 0 967 SSC 0.036806 48 50 17 148 yes 1.000000 3 1.000000 0.033182 0.992761 73.300000 rps15 gene rps15 rps15 108708 108938 -1 231 SSC 0.002886 1 0 61 35 no 0.333333 2 0.500000 0.002886 1.000000 29.500000 IGS_112 igs rps15|ycf1 rps15-ycf1 108939 109257 0 319 SSC 0.006270 3 0 82 59 no 0.333333 2 0.500000 0.006270 1.000000 33.800000 ycf1 gene ycf1 ycf1 109258 114528 -1 5271 SSC 0.006581 52 7 179 65 no 1.000000 3 1.000000 0.006586 0.999431 46.700000 IGS_113 igs ycf1|trnN(GUU) ycf1-trnN(GUU) 114529 115070 0 542 IRa 0.001230 1 0 300 90 no 0.333333 2 0.500000 0.001230 1.000000 37.600000 trnN(GUU) tRNA trnN(GUU) trnN(GUU) 115071 115142 1 72 IRa 0.000000 0 0 300 18 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 IGS_114 igs trnN(GUU)|trnR(ACG) trnN(GUU)-trnR(ACG) 115143 115703 0 561 IRa 0.005942 5 0 300 300 no 0.333333 2 0.500000 0.005942 1.000000 49.200000 trnR(ACG) tRNA trnR(ACG) trnR(ACG) 115704 115777 -1 74 IRa 0.000000 0 0 139 300 no 0.000000 1 0.000000 0.000000 1.000000 29.200000 IGS_115 igs trnR(ACG)|rrn5 trnR(ACG)-rrn5 115778 116016 0 239 IRa 0.000000 0 0 213 218 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn5 rRNA rrn5 rrn5 116017 116137 -1 121 IRa 0.000000 0 0 300 97 no 0.000000 1 0.000000 0.000000 1.000000 26.000000 IGS_116 igs rrn5|rrn4.5 rrn5-rrn4.5 116138 116345 0 208 IRa 0.012821 3 3 300 300 yes 1.000000 3 1.000000 0.006457 1.000000 61.700000 rrn4.5 rRNA rrn4.5 rrn4.5 116346 116448 -1 103 IRa 0.000000 0 0 104 300 no 0.000000 1 0.000000 0.000000 1.000000 26.600000 IGS_117 igs rrn4.5|rrn23 rrn4.5-rrn23 116449 116552 0 104 IRa 0.000000 0 0 207 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23 rRNA rrn23 rrn23 116553 119371 -1 2819 IRa 0.000000 0 0 300 79 no 0.000000 1 0.000000 0.000000 1.000000 28.200000 IGS_118 igs rrn23|trnA(UGC) rrn23-trnA(UGC) 119372 119515 0 144 IRa 0.004630 1 0 300 300 no 0.333333 2 0.500000 0.004630 1.000000 43.000000 trnA(UGC)_part2 tRNA trnA(UGC) trnA(UGC) 119516 119550 -1 35 IRa 0.000000 0 0 64 300 no 0.000000 1 0.000000 0.000000 1.000000 23.500000 trnA(UGC)_part1 tRNA trnA(UGC) trnA(UGC) 120354 120391 -1 38 IRa 0.000000 0 0 145 300 no 0.000000 1 0.000000 0.000000 1.000000 29.600000 IGS_121 igs trnA(UGC)|trnI(GAU) trnA(UGC)-trnI(GAU) 120392 120452 0 61 IRa 0.000000 0 0 183 300 no 0.000000 1 0.000000 0.000000 1.000000 32.500000 trnI(GAU)_part2 tRNA trnI(GAU) trnI(GAU) 120453 120487 -1 35 IRa 0.000000 0 0 244 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI(GAU)_part1 tRNA trnI(GAU) trnI(GAU) 121391 121427 -1 37 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_124 igs trnI(GAU)|rrn16 trnI(GAU)-rrn16 121428 121713 0 286 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16 rRNA rrn16 rrn16 121714 123208 -1 1495 IRa 0.000000 0 4 300 300 no 0.333333 2 0.500000 0.000000 0.997324 46.500000 IGS_125 igs rrn16|trnV(GAC) rrn16-trnV(GAC) 123209 123429 0 221 IRa 0.000000 0 4 300 300 no 0.333333 2 0.500000 0.000000 1.000000 42.100000 trnV(GAC) tRNA trnV(GAC) trnV(GAC) 123430 123501 -1 72 IRa 0.000000 0 0 300 290 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_126 igs trnV(GAC)|rps12 trnV(GAC)-rps12 123502 125321 0 1820 IRa 0.002930 8 6 300 300 no 0.333333 2 0.500000 0.002940 1.000000 47.800000 rps12_part2 gene rps12 rps12 125322 126124 1 803 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_127 igs rps12|rps7 rps12-rps7 126125 126185 0 61 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 126186 126653 1 468 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_128 igs rps7|ndhB rps7-ndhB 126654 126989 0 336 IRa 0.000000 0 0 300 92 no 0.000000 1 0.000000 0.000000 1.000000 26.400000 ndhB gene ndhB ndhB 126990 129255 1 2266 IRa 0.002059 7 1 300 300 no 0.333333 2 0.500000 0.002060 1.000000 46.000000 IGS_129 igs ndhB|trnL(CAA) ndhB-trnL(CAA) 129256 129775 0 520 IRa 0.001282 1 0 300 300 no 0.333333 2 0.500000 0.001282 1.000000 45.400000 trnL(CAA) tRNA trnL(CAA) trnL(CAA) 129776 129855 1 80 IRa 0.000000 0 0 142 300 no 0.000000 1 0.000000 0.000000 1.000000 29.400000 IGS_130 igs trnL(CAA)|ycf2 trnL(CAA)-ycf2 129856 130558 0 703 IRa 0.000000 0 8 222 300 no 1.000000 3 1.000000 0.000000 0.995733 60.000000 ycf2 gene ycf2 ycf2 130559 136660 -1 6102 IRa 0.000876 8 12 300 300 no 1.000000 3 1.000000 0.000876 0.998033 53.200000 IGS_131 igs ycf2|trnI(CAU) ycf2-trnI(CAU) 136661 136748 0 88 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI(CAU) tRNA trnI(CAU) trnI(CAU) 136749 136822 1 74 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_132 igs trnI(CAU)|rpl23 trnI(CAU)-rpl23 136823 136987 0 165 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl23 gene rpl23 rpl23 136988 137341 1 354 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.900000 rpl2 gene rpl2 rpl2 137287 138757 1 1471 IRa 0.000000 0 0 300 40 no 0.000000 1 0.000000 0.000000 1.000000 28.000000 IGS_134 igs rpl2|rps19 rpl2-rps19 138758 138812 0 55 IRa 0.012121 1 0 300 106 no 0.333333 2 0.500000 0.012121 1.000000 40.700000 rps19 gene rps19 rps19 138813 138903 1 91 IRa 0.000000 0 0 14 15 no 0.000000 1 0.000000 0.000000 1.000000 19.800000