feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH-GUG tRNA trnH-GUG trnH-GUG 2 74 -1 73 LSC 0.013699 1 0 278 48 no 1.000000 2 1.000000 NA 1.000000 49.000000 IGS_001 igs trnH-GUG|psbA trnH-GUG-psbA 75 352 0 278 LSC 0.061151 17 0 14 300 no 1.000000 2 1.000000 NA 1.000000 68.700000 psbA gene psbA psbA 353 1414 -1 1062 LSC 0.004708 5 0 9 43 no 1.000000 2 1.000000 NA 1.000000 47.100000 IGS_002 igs psbA|trnK-UUU psbA-trnK-UUU 1415 1690 0 276 LSC 0.037453 10 9 213 160 no 1.000000 2 1.000000 NA 0.967391 74.000000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 1691 1726 -1 36 LSC 0.000000 0 0 22 124 no 0.000000 1 0.000000 NA 1.000000 20.400000 matK gene matK matK 2011 3531 -1 1521 LSC 0.015272 23 15 13 7 no 1.000000 2 1.000000 NA 0.990138 53.900000 IGS_005 igs matK|trnK-UUU matK-trnK-UUU 3532 4269 0 738 LSC 0.016690 12 19 62 42 no 1.000000 2 1.000000 NA 0.974255 58.900000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 4270 4306 -1 37 LSC 0.000000 0 0 149 5 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_006 igs trnK-UUU|rps16 trnK-UUU-rps16 4307 4905 0 599 LSC 0.034682 6 426 186 300 no 1.000000 2 1.000000 NA 0.288815 65.600000 rps16 gene rps16 rps16 4906 6045 -1 1140 LSC 0.017123 5 848 300 108 no 1.000000 2 1.000000 NA 0.256140 50.800000 IGS_007 igs rps16|trnQ-UUG rps16-trnQ-UUG 6046 6500 0 455 LSC 0.024096 10 40 63 142 no 1.000000 2 1.000000 NA 0.912088 62.800000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 6501 6572 -1 72 LSC 0.000000 0 0 53 70 no 0.000000 1 0.000000 NA 1.000000 22.700000 IGS_008 igs trnQ-UUG|psbK trnQ-UUG-psbK 6573 6911 0 339 LSC 0.017699 6 0 125 15 no 1.000000 2 1.000000 NA 1.000000 49.600000 psbK gene psbK psbK 6912 7097 1 186 LSC 0.010753 2 0 9 45 no 1.000000 2 1.000000 NA 1.000000 44.400000 IGS_009 igs psbK|psbI psbK-psbI 7098 7497 0 400 LSC 0.032581 13 1 39 51 no 1.000000 2 1.000000 NA 0.997500 61.500000 psbI gene psbI psbI 7498 7608 1 111 LSC 0.009009 1 0 3 4 no 1.000000 2 1.000000 NA 1.000000 42.900000 IGS_010 igs psbI|trnS-GCU psbI-trnS-GCU 7609 7699 0 91 LSC 0.032967 3 0 59 122 no 1.000000 2 1.000000 NA 1.000000 60.900000 trnS-GCU tRNA trnS-GCU trnS-GCU 7700 7787 -1 88 LSC 0.000000 0 0 49 34 no 0.000000 1 0.000000 NA 1.000000 21.300000 IGS_011 igs trnS-GCU|trnT-CGU trnS-GCU-trnT-CGU 7788 8367 0 580 LSC 0.028902 15 61 137 39 no 1.000000 2 1.000000 NA 0.894828 65.800000 trnT-CGU_part1 tRNA trnT-CGU trnT-CGU 8368 8401 1 34 LSC 0.000000 0 0 99 5 no 0.000000 1 0.000000 NA 1.000000 19.100000 trnT-CGU_part2 tRNA trnT-CGU trnT-CGU 9088 9130 1 43 LSC 0.000000 0 0 156 106 no 0.000000 1 0.000000 NA 1.000000 26.700000 IGS_014 igs trnT-CGU|trnR-UCU trnT-CGU-trnR-UCU 9131 9292 0 162 LSC 0.006494 1 8 199 43 no 1.000000 2 1.000000 NA 0.950617 49.200000 trnR-UCU tRNA trnR-UCU trnR-UCU 9293 9364 1 72 LSC 0.013889 1 0 55 33 no 1.000000 2 1.000000 NA 1.000000 48.000000 IGS_015 igs trnR-UCU|atpA trnR-UCU-atpA 9365 9538 0 174 LSC 0.076471 13 4 28 20 no 1.000000 2 1.000000 NA 0.977011 73.100000 atpA gene atpA atpA 9539 11062 -1 1524 LSC 0.007874 12 0 23 68 no 1.000000 2 1.000000 NA 1.000000 50.000000 IGS_016 igs atpA|atpF atpA-atpF 11063 11125 0 63 LSC 0.000000 0 0 155 5 no 0.000000 1 0.000000 NA 1.000000 19.100000 atpF gene atpF atpF 11126 12408 -1 1283 LSC 0.015848 20 21 218 6 no 1.000000 2 1.000000 NA 0.983632 54.900000 IGS_017 igs atpF|atpH atpF-atpH 12409 12819 0 411 LSC 0.029412 12 3 32 125 no 1.000000 2 1.000000 NA 0.992701 59.800000 atpH gene atpH atpH 12820 13065 -1 246 LSC 0.004065 1 0 32 44 no 1.000000 2 1.000000 NA 1.000000 42.200000 IGS_018 igs atpH|atpI atpH-atpI 13066 13529 0 464 LSC 0.024444 11 14 120 300 no 1.000000 2 1.000000 NA 0.969828 66.800000 atpI gene atpI atpI 13530 14279 -1 750 LSC 0.002667 2 0 8 8 no 1.000000 2 1.000000 NA 1.000000 45.900000 IGS_019 igs atpI|rps2 atpI-rps2 14280 14522 0 243 LSC 0.012876 3 10 179 87 no 1.000000 2 1.000000 NA 0.958848 55.300000 rps2 gene rps2 rps2 14523 15233 -1 711 LSC 0.005626 4 0 25 101 no 1.000000 2 1.000000 NA 1.000000 48.900000 IGS_020 igs rps2|rpoC2 rps2-rpoC2 15234 15462 0 229 LSC 0.035242 8 2 300 95 no 1.000000 2 1.000000 NA 0.991266 65.700000 rpoC2 gene rpoC2 rpoC2 15463 19590 -1 4128 LSC 0.010470 43 21 65 262 no 1.000000 2 1.000000 NA 0.994913 50.200000 IGS_021 igs rpoC2|rpoC1 rpoC2-rpoC1 19591 19777 0 187 LSC 0.000000 0 0 51 75 no 0.000000 1 0.000000 NA 1.000000 22.600000 rpoC1 gene rpoC1 rpoC1 19778 22596 -1 2819 LSC 0.007107 20 5 238 125 no 1.000000 2 1.000000 NA 0.998226 54.600000 IGS_022 igs rpoC1|rpoB rpoC1-rpoB 22597 22622 0 26 LSC 0.000000 0 0 201 99 no 0.000000 1 0.000000 NA 1.000000 26.200000 rpoB gene rpoB rpoB 22623 25841 -1 3219 LSC 0.009630 31 0 227 31 no 1.000000 2 1.000000 NA 1.000000 48.100000 IGS_023 igs rpoB|trnC-GCA rpoB-trnC-GCA 25842 26922 0 1081 LSC 0.021093 22 38 106 90 no 1.000000 2 1.000000 NA 0.964847 65.900000 trnC-GCA tRNA trnC-GCA trnC-GCA 26923 26993 1 71 LSC 0.000000 0 0 15 19 no 0.000000 1 0.000000 NA 1.000000 19.900000 IGS_024 igs trnC-GCA|petN trnC-GCA-petN 26994 27644 0 651 LSC 0.018663 12 8 86 28 no 1.000000 2 1.000000 NA 0.987711 57.700000 petN gene petN petN 27645 27734 1 90 LSC 0.011111 1 0 13 45 no 1.000000 2 1.000000 NA 1.000000 44.900000 IGS_025 igs petN|psbM petN-psbM 27735 28231 0 497 LSC 0.022587 11 10 61 6 no 1.000000 2 1.000000 NA 0.979879 56.900000 psbM gene psbM psbM 28232 28336 -1 105 LSC 0.009524 1 0 32 34 no 1.000000 2 1.000000 NA 1.000000 45.400000 IGS_026 igs psbM|trnD-GUC psbM-trnD-GUC 28337 29363 0 1027 LSC 0.016913 16 81 98 82 no 1.000000 2 1.000000 NA 0.921130 63.500000 trnD-GUC tRNA trnD-GUC trnD-GUC 29364 29437 -1 74 LSC 0.000000 0 0 6 8 no 0.000000 1 0.000000 NA 1.000000 19.200000 IGS_027 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 29438 29847 0 410 LSC 0.032500 13 10 80 93 no 1.000000 2 1.000000 NA 0.975610 66.700000 trnY-GUA tRNA trnY-GUA trnY-GUA 29848 29931 -1 84 LSC 0.000000 0 0 48 9 no 0.000000 1 0.000000 NA 1.000000 19.400000 IGS_028 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 29932 29986 0 55 LSC 0.037037 2 1 132 13 no 1.000000 2 1.000000 NA 0.981818 61.400000 IGS_029 igs trnE-UUC|trnT-GGU trnE-UUC-trnT-GGU 30060 30488 0 429 LSC 0.012136 5 17 59 166 no 1.000000 2 1.000000 NA 0.960373 55.400000 trnT-GGU tRNA trnT-GGU trnT-GGU 30489 30560 1 72 LSC 0.000000 0 2 100 94 no 1.000000 2 1.000000 NA 0.972222 47.200000 IGS_030 igs trnT-GGU|psbD trnT-GGU-psbD 30561 31705 0 1145 LSC 0.023787 25 94 172 300 no 1.000000 2 1.000000 NA 0.917904 74.000000 psbD gene psbD psbD 31706 32767 1 1062 LSC 0.002825 3 0 82 201 no 1.000000 2 1.000000 NA 1.000000 51.500000 psbC gene psbC psbC 32715 34136 1 1422 LSC 0.007082 10 10 300 34 no 1.000000 2 1.000000 NA 0.992968 51.000000 IGS_032 igs psbC|trnS-UGA psbC-trnS-UGA 34137 34336 0 200 LSC 0.015789 3 10 72 32 no 1.000000 2 1.000000 NA 0.950000 53.700000 trnS-UGA tRNA trnS-UGA trnS-UGA 34337 34429 -1 93 LSC 0.021505 2 0 10 12 no 1.000000 2 1.000000 NA 1.000000 50.600000 IGS_033 igs trnS-UGA|psbZ trnS-UGA-psbZ 34430 34781 0 352 LSC 0.039514 13 23 28 59 no 1.000000 2 1.000000 NA 0.934659 67.500000 psbZ gene psbZ psbZ 34782 34970 1 189 LSC 0.005291 1 0 0 101 no 1.000000 2 1.000000 NA 1.000000 40.500000 IGS_034 igs psbZ|trnG-GCC psbZ-trnG-GCC 34971 35425 0 455 LSC 0.022422 10 9 129 24 no 1.000000 2 1.000000 NA 0.980220 57.300000 trnG-GCC tRNA trnG-GCC trnG-GCC 35426 35496 1 71 LSC 0.014085 1 0 87 11 no 1.000000 2 1.000000 NA 1.000000 46.400000 IGS_035 igs trnG-GCC|trnM-CAU trnG-GCC-trnM-CAU 35497 35638 0 142 LSC 0.007407 1 7 46 197 no 1.000000 2 1.000000 NA 0.950704 49.900000 trnM-CAU tRNA trnM-CAU trnM-CAU 35639 35712 -1 74 LSC 0.000000 0 0 130 123 no 0.000000 1 0.000000 NA 1.000000 28.000000 IGS_036 igs trnM-CAU|rps14 trnM-CAU-rps14 35713 35872 0 160 LSC 0.012500 2 0 204 84 no 1.000000 2 1.000000 NA 1.000000 51.000000 rps14 gene rps14 rps14 35873 36175 -1 303 LSC 0.003300 1 0 25 129 no 1.000000 2 1.000000 NA 1.000000 41.300000 IGS_037 igs rps14|psaB rps14-psaB 36176 36307 0 132 LSC 0.007576 1 0 218 120 no 1.000000 2 1.000000 NA 1.000000 50.900000 psaB gene psaB psaB 36308 38512 -1 2205 LSC 0.003175 7 0 2 277 no 1.000000 2 1.000000 NA 1.000000 44.300000 IGS_038 igs psaB|psaA psaB-psaA 38513 38537 0 25 LSC 0.000000 0 9 141 252 no 1.000000 2 1.000000 NA 0.640000 44.200000 psaA gene psaA psaA 38538 40790 -1 2253 LSC 0.003995 9 0 166 139 no 1.000000 2 1.000000 NA 1.000000 54.900000 IGS_039 igs psaA|ycf3 psaA-ycf3 40791 41472 0 682 LSC 0.009077 6 21 89 300 no 1.000000 2 1.000000 NA 0.969208 58.600000 ycf3 gene ycf3 ycf3 41473 43452 -1 1980 LSC 0.008081 16 0 81 110 no 1.000000 2 1.000000 NA 1.000000 53.500000 IGS_040 igs ycf3|trnS-GGA ycf3-trnS-GGA 43453 43697 0 245 LSC 0.009091 2 25 151 151 no 1.000000 2 1.000000 NA 0.897959 57.300000 trnS-GGA tRNA trnS-GGA trnS-GGA 43698 43784 1 87 LSC 0.000000 0 0 82 64 no 0.000000 1 0.000000 NA 1.000000 23.500000 IGS_041 igs trnS-GGA|rps4 trnS-GGA-rps4 43785 44062 0 278 LSC 0.027778 7 26 169 9 no 1.000000 2 1.000000 NA 0.906475 57.400000 rps4 gene rps4 rps4 44063 44668 -1 606 LSC 0.014851 9 0 26 137 no 1.000000 2 1.000000 NA 1.000000 54.200000 IGS_042 igs rps4|trnT-UGU rps4-trnT-UGU 44669 45060 0 392 LSC 0.015831 6 13 26 221 no 1.000000 2 1.000000 NA 0.966837 53.600000 trnT-UGU tRNA trnT-UGU trnT-UGU 45061 45133 -1 73 LSC 0.000000 0 0 85 148 no 0.000000 1 0.000000 NA 1.000000 25.100000 IGS_043 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 45134 45905 0 772 LSC 0.020298 15 33 158 55 no 1.000000 2 1.000000 NA 0.957254 63.600000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 45906 45940 1 35 LSC 0.000000 0 0 0 20 no 0.000000 1 0.000000 NA 1.000000 18.800000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 46444 46493 1 50 LSC 0.000000 0 0 69 35 no 0.000000 1 0.000000 NA 1.000000 21.400000 IGS_046 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 46494 46841 0 348 LSC 0.021672 7 25 119 283 no 1.000000 2 1.000000 NA 0.928161 63.900000 trnF-GAA tRNA trnF-GAA trnF-GAA 46842 46914 1 73 LSC 0.000000 0 0 1 210 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_047 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 46915 47462 0 548 LSC 0.012739 6 77 74 72 no 1.000000 2 1.000000 NA 0.859489 57.500000 ndhJ gene ndhJ ndhJ 47463 47939 -1 477 LSC 0.004556 2 38 93 39 no 1.000000 2 1.000000 NA 0.920335 50.700000 IGS_048 igs ndhJ|ndhK ndhJ-ndhK 47940 48040 0 101 LSC 0.039604 4 0 124 87 no 1.000000 2 1.000000 NA 1.000000 66.800000 ndhK gene ndhK ndhK 48041 48718 -1 678 LSC 0.011945 7 92 2 25 no 1.000000 2 1.000000 NA 0.864307 53.000000 IGS_049 igs ndhK|ndhC ndhK-ndhC 48719 48786 0 68 LSC 0.069767 3 25 34 109 no 1.000000 2 1.000000 NA 0.632353 64.000000 ndhC gene ndhC ndhC 48787 49149 -1 363 LSC 0.014577 5 20 32 54 no 1.000000 2 1.000000 NA 0.944904 54.200000 IGS_050 igs ndhC|trnV-UAC ndhC-trnV-UAC 49150 49993 0 844 LSC 0.021197 17 42 104 200 no 1.000000 2 1.000000 NA 0.950237 68.400000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 49994 50028 -1 35 LSC 0.000000 0 0 16 165 no 0.000000 1 0.000000 NA 1.000000 20.000000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 50627 50665 -1 39 LSC 0.000000 0 0 62 160 no 0.000000 1 0.000000 NA 1.000000 23.400000 IGS_053 igs trnV-UAC|trnM-CAU trnV-UAC-trnM-CAU 50666 50849 0 184 LSC 0.005848 1 13 101 43 no 1.000000 2 1.000000 NA 0.929348 48.300000 trnM-CAU tRNA trnM-CAU trnM-CAU 50850 50922 1 73 LSC 0.013699 1 0 23 24 no 1.000000 2 1.000000 NA 1.000000 47.100000 IGS_054 igs trnM-CAU|atpE trnM-CAU-atpE 50923 51048 0 126 LSC 0.047619 6 0 29 20 no 1.000000 2 1.000000 NA 1.000000 66.400000 atpE gene atpE atpE 51049 51447 -1 399 LSC 0.015038 6 0 19 8 no 1.000000 2 1.000000 NA 1.000000 48.800000 atpB gene atpB atpB 51444 52940 -1 1497 LSC 0.007348 11 0 41 6 no 1.000000 2 1.000000 NA 1.000000 48.400000 IGS_056 igs atpB|rbcL atpB-rbcL 52941 53657 0 717 LSC 0.013804 9 65 22 300 no 1.000000 2 1.000000 NA 0.909344 56.900000 rbcL gene rbcL rbcL 53658 55097 1 1440 LSC 0.001389 2 0 81 68 no 1.000000 2 1.000000 NA 1.000000 49.600000 IGS_057 igs rbcL|accD rbcL-accD 55098 56048 0 951 LSC 0.102477 91 63 300 15 yes 1.000000 2 1.000000 NA 0.933754 83.700000 accD gene accD accD 56049 57752 1 1704 LSC 0.094351 152 93 22 3 yes 1.000000 2 1.000000 NA 0.945423 81.900000 IGS_058 igs accD|psaI accD-psaI 57753 58512 0 760 LSC 0.027982 19 81 55 142 no 1.000000 2 1.000000 NA 0.893421 66.800000 psaI gene psaI psaI 58513 58626 1 114 LSC 0.000000 0 0 118 28 no 0.000000 1 0.000000 NA 1.000000 20.900000 IGS_059 igs psaI|ycf4 psaI-ycf4 58627 59032 0 406 LSC 0.029024 11 27 232 19 no 1.000000 2 1.000000 NA 0.933498 62.000000 ycf4 gene ycf4 ycf4 59033 59587 1 555 LSC 0.014414 8 0 14 7 no 1.000000 2 1.000000 NA 1.000000 51.600000 IGS_060 igs ycf4|cemA ycf4-cemA 59588 60011 0 424 LSC 0.021845 9 12 110 129 no 1.000000 2 1.000000 NA 0.971698 63.600000 cemA gene cemA cemA 60012 60701 1 690 LSC 0.018841 13 0 20 10 no 1.000000 2 1.000000 NA 1.000000 55.300000 IGS_061 igs cemA|petA cemA-petA 60702 60926 0 225 LSC 0.013761 3 7 17 151 no 1.000000 2 1.000000 NA 0.968889 49.600000 petA gene petA petA 60927 61889 1 963 LSC 0.010384 10 0 201 37 no 1.000000 2 1.000000 NA 1.000000 52.500000 IGS_062 igs petA|psbJ petA-psbJ 61890 62762 0 873 LSC 0.020507 17 44 139 27 no 1.000000 2 1.000000 NA 0.949599 62.300000 psbJ gene psbJ psbJ 62763 62885 -1 123 LSC 0.048780 6 0 14 17 no 1.000000 2 1.000000 NA 1.000000 66.600000 IGS_063 igs psbJ|psbL psbJ-psbL 62886 63028 0 143 LSC 0.048951 7 0 13 54 no 1.000000 2 1.000000 NA 1.000000 66.600000 psbL gene psbL psbL 63029 63145 -1 117 LSC 0.025641 3 0 6 2 no 1.000000 2 1.000000 NA 1.000000 52.400000 IGS_064 igs psbL|psbF psbL-psbF 63146 63166 0 21 LSC 0.047619 1 0 10 30 no 1.000000 2 1.000000 NA 1.000000 65.600000 psbF gene psbF psbF 63167 63286 -1 120 LSC 0.025000 3 0 18 30 no 1.000000 2 1.000000 NA 1.000000 53.200000 IGS_065 igs psbF|psbE psbF-psbE 63287 63295 0 9 LSC 0.000000 0 0 9 21 no 0.000000 1 0.000000 NA 1.000000 19.400000 psbE gene psbE psbE 63296 63547 -1 252 LSC 0.011905 3 0 18 111 no 1.000000 2 1.000000 NA 1.000000 45.700000 IGS_066 igs psbE|petL psbE-petL 63548 64884 0 1337 LSC 0.028346 36 67 20 281 no 1.000000 2 1.000000 NA 0.949888 66.200000 petL gene petL petL 64885 64980 1 96 LSC 0.000000 0 0 9 185 no 0.000000 1 0.000000 NA 1.000000 19.400000 IGS_067 igs petL|petG petL-petG 64981 65168 0 188 LSC 0.005348 1 1 105 192 no 1.000000 2 1.000000 NA 0.994681 49.000000 petG gene petG petG 65169 65282 1 114 LSC 0.000000 0 0 2 78 no 0.000000 1 0.000000 NA 1.000000 18.900000 IGS_068 igs petG|trnW-CCA petG-trnW-CCA 65283 65416 0 134 LSC 0.007692 1 4 116 89 no 1.000000 2 1.000000 NA 0.970149 51.500000 trnW-CCA tRNA trnW-CCA trnW-CCA 65417 65490 -1 74 LSC 0.000000 0 0 55 15 no 0.000000 1 0.000000 NA 1.000000 19.900000 IGS_069 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 65491 65689 0 199 LSC 0.043478 8 15 129 107 no 1.000000 2 1.000000 NA 0.924623 74.200000 trnP-UGG tRNA trnP-UGG trnP-UGG 65690 65763 -1 74 LSC 0.000000 0 0 38 33 no 0.000000 1 0.000000 NA 1.000000 21.200000 IGS_070 igs trnP-UGG|psaJ trnP-UGG-psaJ 65764 66092 0 329 LSC 0.031546 10 12 112 59 no 1.000000 2 1.000000 NA 0.963526 64.100000 psaJ gene psaJ psaJ 66093 66221 1 129 LSC 0.007752 1 0 107 27 no 1.000000 2 1.000000 NA 1.000000 44.000000 IGS_071 igs psaJ|rpl33 psaJ-rpl33 66222 66653 0 432 LSC 0.060533 25 19 69 58 yes 1.000000 2 1.000000 NA 0.956019 78.600000 rpl33 gene rpl33 rpl33 66654 66854 1 201 LSC 0.004975 1 0 24 49 no 1.000000 2 1.000000 NA 1.000000 42.200000 IGS_072 igs rpl33|rps18 rpl33-rps18 66855 67050 0 196 LSC 0.029586 5 27 142 246 no 1.000000 2 1.000000 NA 0.862245 67.000000 rps18 gene rps18 rps18 67051 67356 1 306 LSC 0.006536 2 0 113 102 no 1.000000 2 1.000000 NA 1.000000 49.000000 IGS_073 igs rps18|rpl20 rps18-rpl20 67357 67646 0 290 LSC 0.006920 2 1 0 0 no 1.000000 2 1.000000 NA 0.996552 41.800000 rpl20 gene rpl20 rpl20 67647 68000 -1 354 LSC 0.011299 4 0 123 27 no 1.000000 2 1.000000 NA 1.000000 47.100000 IGS_074 igs rpl20|rps12 rpl20-rps12 68001 68732 0 732 LSC 0.011080 8 10 50 83 no 1.000000 2 1.000000 NA 0.986339 55.200000 rps12_part1 gene rps12 rps12 68733 68846 -1 114 LSC 0.017544 2 0 24 58 no 1.000000 2 1.000000 NA 1.000000 49.400000 IGS_075 igs rps12|clpP rps12-clpP 68847 69041 0 195 LSC 0.020513 4 0 17 68 no 1.000000 2 1.000000 NA 1.000000 50.600000 clpP gene clpP clpP 69042 69284 -1 243 LSC 0.045833 11 3 21 17 no 1.000000 2 1.000000 NA 0.987654 66.300000 IGS_076 igs clpP|psbB clpP-psbB 69285 71608 0 2324 LSC 0.022437 51 51 5 38 no 1.000000 2 1.000000 NA 0.978055 57.400000 psbB gene psbB psbB 71609 73135 1 1527 LSC 0.005894 9 0 33 90 no 1.000000 2 1.000000 NA 1.000000 49.600000 IGS_077 igs psbB|psbT psbB-psbT 73136 73328 0 193 LSC 0.015625 3 1 30 75 no 1.000000 2 1.000000 NA 0.994819 49.200000 psbT gene psbT psbT 73329 73430 1 102 LSC 0.009804 1 0 55 65 no 1.000000 2 1.000000 NA 1.000000 47.300000 IGS_078 igs psbT|psbN psbT-psbN 73431 73495 0 65 LSC 0.000000 0 0 26 0 no 0.000000 1 0.000000 NA 1.000000 18.800000 psbN gene psbN psbN 73496 73627 -1 132 LSC 0.015152 2 0 91 99 no 1.000000 2 1.000000 NA 1.000000 53.000000 IGS_079 igs psbN|psbH psbN-psbH 73628 73731 0 104 LSC 0.019231 2 0 92 211 no 1.000000 2 1.000000 NA 1.000000 55.500000 psbH gene psbH psbH 73732 73953 1 222 LSC 0.004505 1 0 2 10 no 1.000000 2 1.000000 NA 1.000000 40.200000 IGS_080 igs psbH|petB psbH-petB 73954 74086 0 133 LSC 0.040000 5 8 10 26 no 1.000000 2 1.000000 NA 0.939850 65.500000 petB gene petB petB 74087 75537 1 1451 LSC 0.012491 18 10 27 58 no 1.000000 2 1.000000 NA 0.993108 53.600000 IGS_081 igs petB|petD petB-petD 75538 75735 0 198 LSC 0.010152 2 1 155 45 no 1.000000 2 1.000000 NA 0.994949 47.200000 petD gene petD petD 75736 76947 1 1212 LSC 0.008333 10 12 104 56 no 1.000000 2 1.000000 NA 0.990099 53.700000 IGS_082 igs petD|rpoA petD-rpoA 76948 77141 0 194 LSC 0.021277 4 6 297 115 no 1.000000 2 1.000000 NA 0.969072 61.300000 rpoA gene rpoA rpoA 77142 78125 -1 984 LSC 0.011179 11 0 16 70 no 1.000000 2 1.000000 NA 1.000000 51.400000 IGS_083 igs rpoA|rps11 rpoA-rps11 78126 78189 0 64 LSC 0.000000 0 0 218 6 no 0.000000 1 0.000000 NA 1.000000 19.200000 rps11 gene rps11 rps11 78190 78606 -1 417 LSC 0.014388 6 0 282 7 no 1.000000 2 1.000000 NA 1.000000 48.700000 IGS_084 igs rps11|rpl36 rps11-rpl36 78607 78710 0 104 LSC 0.039216 4 2 44 45 no 1.000000 2 1.000000 NA 0.980769 65.100000 rpl36 gene rpl36 rpl36 78711 78824 -1 114 LSC 0.008772 1 0 16 22 no 1.000000 2 1.000000 NA 1.000000 43.700000 IGS_085 igs rpl36|rps8 rpl36-rps8 78825 79295 0 471 LSC 0.011111 5 21 68 237 no 1.000000 2 1.000000 NA 0.955414 56.800000 rps8 gene rps8 rps8 79296 79700 -1 405 LSC 0.002469 1 0 293 25 no 1.000000 2 1.000000 NA 1.000000 43.000000 IGS_086 igs rps8|rpl14 rps8-rpl14 79701 79918 0 218 LSC 0.014706 3 14 167 63 no 1.000000 2 1.000000 NA 0.935780 55.000000 rpl14 gene rpl14 rpl14 79919 80287 -1 369 LSC 0.005420 2 0 26 36 no 1.000000 2 1.000000 NA 1.000000 44.000000 IGS_087 igs rpl14|rpl16 rpl14-rpl16 80288 80410 0 123 LSC 0.041237 4 26 51 171 no 1.000000 2 1.000000 NA 0.788618 64.300000 rpl16 gene rpl16 rpl16 80411 81547 -1 1137 LSC 0.020372 23 8 2 147 no 1.000000 2 1.000000 NA 0.992964 56.300000 IGS_088 igs rpl16|rps3 rpl16-rps3 81548 82034 0 487 LSC 0.009112 4 48 67 259 no 1.000000 2 1.000000 NA 0.901437 55.000000 rps3 gene rps3 rps3 82035 82691 -1 657 LSC 0.012177 8 0 44 17 no 1.000000 2 1.000000 NA 1.000000 52.000000 rpl22 gene rpl22 rpl22 82676 83158 -1 483 LSC 0.016563 8 0 60 27 no 1.000000 2 1.000000 NA 1.000000 52.900000 IGS_090 igs rpl22|rps19 rpl22-rps19 83159 83219 0 61 LSC 0.018519 1 7 104 28 no 1.000000 2 1.000000 NA 0.885246 53.000000 rps19 gene rps19 rps19 83220 83498 -1 279 LSC 0.007168 2 0 33 17 no 1.000000 2 1.000000 NA 1.000000 42.900000 IGS_091 igs rps19|rpl2 rps19-rpl2 83499 83552 0 54 LSC 0.039216 2 3 212 147 no 1.000000 2 1.000000 NA 0.944444 75.500000 rpl2 gene rpl2 rpl2 83553 85058 -1 1506 LSC 0.007973 12 1 4 195 no 1.000000 2 1.000000 NA 0.999336 48.700000 IGS_092 igs rpl2|rpl23 rpl2-rpl23 85059 85076 0 18 IRb 0.000000 0 0 203 177 no 0.000000 1 0.000000 NA 1.000000 32.000000 rpl23 gene rpl23 rpl23 85077 85358 -1 282 IRb 0.007407 2 12 221 300 no 1.000000 2 1.000000 NA 0.957447 60.800000 IGS_093 igs rpl23|trnM-CAU rpl23-trnM-CAU 85359 85654 0 296 IRb 0.000000 0 116 39 300 no 1.000000 2 1.000000 NA 0.608108 35.700000 trnM-CAU tRNA trnM-CAU trnM-CAU 85655 85728 -1 74 IRb 0.000000 0 0 300 281 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_094 igs trnM-CAU|ycf15 trnM-CAU-ycf15 85729 93766 0 8038 IRb 0.014305 104 768 300 300 no 1.000000 2 1.000000 NA 0.904454 64.100000 ycf15 gene ycf15 ycf15 93767 94000 1 234 IRb 0.000000 0 1 196 262 no 1.000000 2 1.000000 NA 0.995726 52.600000 IGS_095 igs ycf15|trnL-CAA ycf15-trnL-CAA 94001 94470 0 470 IRb 0.006522 3 10 300 161 no 1.000000 2 1.000000 NA 0.978723 58.900000 trnL-CAA tRNA trnL-CAA trnL-CAA 94471 94551 -1 81 IRb 0.000000 0 0 112 80 no 0.000000 1 0.000000 NA 1.000000 24.800000 IGS_096 igs trnL-CAA|ndhB trnL-CAA-ndhB 94552 95128 0 577 IRb 0.004141 2 94 193 300 no 1.000000 2 1.000000 NA 0.837088 61.700000 ndhB gene ndhB ndhB 95129 96954 -1 1826 IRb 0.001652 3 10 300 276 no 1.000000 2 1.000000 NA 0.994524 59.600000 IGS_097 igs ndhB|rps7 ndhB-rps7 96955 97629 0 675 IRb 0.006088 4 18 172 48 no 1.000000 2 1.000000 NA 0.973333 53.400000 rps7 gene rps7 rps7 97630 98097 -1 468 IRb 0.006410 3 0 300 300 no 1.000000 2 1.000000 NA 1.000000 59.700000 IGS_098 igs rps7|rps12 rps7-rps12 98098 98702 0 605 IRb 0.001653 1 0 201 300 no 1.000000 2 1.000000 NA 1.000000 59.700000 rps12_part2 gene rps12 rps12 98703 98945 -1 243 IRb 0.000000 0 0 146 60 no 0.000000 1 0.000000 NA 1.000000 23.200000 IGS_099 igs rps12|trnV-GAC rps12-trnV-GAC 98946 100865 0 1920 IRb 0.007362 12 290 300 150 no 1.000000 2 1.000000 NA 0.848958 60.200000 trnV-GAC tRNA trnV-GAC trnV-GAC 100866 100937 1 72 IRb 0.000000 0 0 300 78 no 0.000000 1 0.000000 NA 1.000000 24.600000 IGS_100 igs trnV-GAC|rrn16S trnV-GAC-rrn16S 100938 101355 0 418 IRb 0.007177 3 0 300 300 no 1.000000 2 1.000000 NA 1.000000 59.100000 rrn16S rRNA rrn16S rrn16S 101356 102848 1 1493 IRb 0.000000 0 0 114 178 no 0.000000 1 0.000000 NA 1.000000 33.600000 IGS_101 igs rrn16S|trnE-UUC rrn16S-trnE-UUC 102849 102957 0 109 IRb 0.000000 0 14 300 69 no 1.000000 2 1.000000 NA 0.871560 45.300000 trnE-UUC_part1 tRNA trnE-UUC trnE-UUC 102958 102989 1 32 IRb 0.000000 0 0 300 37 no 0.000000 1 0.000000 NA 1.000000 21.500000 trnE-UUC_part2 tRNA trnE-UUC trnE-UUC 103935 103974 1 40 IRb 0.000000 0 0 153 300 no 0.000000 1 0.000000 NA 1.000000 30.200000 IGS_104 igs trnE-UUC|trnA-UGC trnE-UUC-trnA-UGC 103975 104038 0 64 IRb 0.000000 0 0 193 300 no 0.000000 1 0.000000 NA 1.000000 33.200000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 104039 104075 1 37 IRb 0.000000 0 0 257 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 104876 104911 1 36 IRb 0.000000 0 0 238 136 no 0.000000 1 0.000000 NA 1.000000 28.900000 IGS_107 igs trnA-UGC|rrn23S trnA-UGC-rrn23S 104912 105063 0 152 IRb 0.006579 1 0 274 261 no 1.000000 2 1.000000 NA 1.000000 56.300000 rrn23S rRNA rrn23S rrn23S 105064 107873 1 2810 IRb 0.001068 3 0 15 275 no 1.000000 2 1.000000 NA 1.000000 42.800000 IGS_108 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 107874 108174 0 301 IRb 0.006645 2 0 300 0 no 1.000000 2 1.000000 NA 1.000000 41.300000 rrn4.5S rRNA rrn4.5S rrn4.5S 108175 108277 1 103 IRb 0.009709 1 0 15 23 no 1.000000 2 1.000000 NA 1.000000 44.200000 IGS_109 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 108278 108289 0 12 IRb 0.000000 0 0 102 11 no 0.000000 1 0.000000 NA 1.000000 19.600000 rrn5S rRNA rrn5S rrn5S 108290 108420 1 131 IRb 0.007634 1 0 114 72 no 1.000000 2 1.000000 NA 1.000000 47.300000 IGS_110 igs rrn5S|trnR-ACG rrn5S-trnR-ACG 108421 108654 0 234 IRb 0.017094 4 0 119 300 no 1.000000 2 1.000000 NA 1.000000 56.300000 trnR-ACG tRNA trnR-ACG trnR-ACG 108655 108728 1 74 IRb 0.000000 0 0 44 294 no 0.000000 1 0.000000 NA 1.000000 22.100000 IGS_111 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 108729 109356 0 628 IRb 0.001610 1 7 118 100 no 1.000000 2 1.000000 NA 0.988854 53.300000 trnN-GUU tRNA trnN-GUU trnN-GUU 109357 109428 -1 72 IRb 0.000000 0 0 300 28 no 0.000000 1 0.000000 NA 1.000000 20.900000 IGS_112 igs trnN-GUU|rps15 trnN-GUU-rps15 109429 115748 0 6320 IRb 0.036595 224 199 300 283 yes 1.000000 2 1.000000 NA 0.968513 76.400000 rps15 gene rps15 rps15 115749 116015 1 267 IRb 0.000000 0 0 2 16 no 0.000000 1 0.000000 NA 1.000000 18.900000 IGS_113 igs rps15|ndhH rps15-ndhH 116016 116125 0 110 IRb 0.023256 2 24 269 293 no 1.000000 2 1.000000 NA 0.781818 65.400000 ndhH gene ndhH ndhH 116126 117307 1 1182 IRb 0.006885 8 20 91 82 no 1.000000 2 1.000000 NA 0.983080 55.500000 IGS_114 igs ndhH|ndhA ndhH-ndhA 117308 117308 0 1 SSC 0.000000 0 0 207 81 no 0.000000 1 0.000000 NA 1.000000 24.800000 ndhA gene ndhA ndhA 117309 119480 1 2172 SSC 0.409912 794 235 208 0 yes 1.000000 2 1.000000 NA 0.891805 80.600000 IGS_115 igs ndhA|ndhI ndhA-ndhI 119481 119564 0 84 SSC 0.493976 41 1 2 1 no 1.000000 2 1.000000 NA 0.988095 73.700000 ndhI gene ndhI ndhI 119565 120068 1 504 SSC 0.444169 179 101 0 2 yes 1.000000 2 1.000000 NA 0.799603 77.400000 IGS_116 igs ndhI|ndhG ndhI-ndhG 120069 120386 0 318 SSC 0.385593 91 82 13 13 no 1.000000 2 1.000000 NA 0.742138 72.800000 ndhG gene ndhG ndhG 120387 120929 1 543 SSC 0.451220 148 215 10 3 yes 1.000000 2 1.000000 NA 0.604052 72.900000 IGS_117 igs ndhG|ndhE ndhG-ndhE 120930 121166 0 237 SSC 0.426667 96 12 0 1 yes 1.000000 2 1.000000 NA 0.949367 77.300000 ndhE gene ndhE ndhE 121167 121472 1 306 SSC 0.477551 117 61 0 0 no 1.000000 2 1.000000 NA 0.800654 73.300000 IGS_118 igs ndhE|psaC ndhE-psaC 121473 121713 0 241 SSC 0.497758 111 18 1 0 yes 1.000000 2 1.000000 NA 0.925311 76.600000 psaC gene psaC psaC 121714 121959 1 246 SSC 0.462121 61 114 0 0 no 1.000000 2 1.000000 NA 0.536585 66.700000 IGS_119 igs psaC|ndhD psaC-ndhD 121960 122171 0 212 SSC 0.482759 84 38 1 2 no 1.000000 2 1.000000 NA 0.820755 73.800000 ndhD gene ndhD ndhD 122172 123614 1 1443 SSC 0.455075 547 241 1 0 yes 1.000000 2 1.000000 NA 0.832987 80.300000 IGS_120 igs ndhD|ccsA ndhD-ccsA 123615 123837 0 223 SSC 0.409524 86 13 2 4 yes 1.000000 2 1.000000 NA 0.941704 77.300000 ccsA gene ccsA ccsA 123838 124818 -1 981 SSC 0.441509 351 186 1 3 yes 1.000000 2 1.000000 NA 0.810398 79.700000 IGS_121 igs ccsA|trnL-UAG ccsA-trnL-UAG 124819 124926 0 108 SSC 0.342105 13 70 0 25 no 1.000000 2 1.000000 NA 0.351852 64.400000 trnL-UAG tRNA trnL-UAG trnL-UAG 124927 125006 -1 80 SSC 0.500000 21 38 1 0 no 1.000000 2 1.000000 NA 0.525000 66.600000 IGS_122 igs trnL-UAG|ndhF trnL-UAG-ndhF 125007 126600 0 1594 SSC 0.437931 508 434 0 2 yes 1.000000 2 1.000000 NA 0.727729 77.100000 ndhF gene ndhF ndhF 126601 128841 1 2241 SSC 0.488172 908 381 18 2 yes 1.000000 2 1.000000 NA 0.829987 78.800000 ndhH gene ndhH ndhH 128838 129776 -1 939 IRa 0.019890 18 34 0 91 no 1.000000 2 1.000000 NA 0.963791 58.600000 IGS_124 igs ndhH|rps15 ndhH-rps15 129777 129886 0 110 IRa 0.023256 2 24 293 269 no 1.000000 2 1.000000 NA 0.781818 65.400000 rps15 gene rps15 rps15 129887 130153 -1 267 IRa 0.000000 0 0 16 2 no 0.000000 1 0.000000 NA 1.000000 18.900000 IGS_125 igs rps15|trnN-GUU rps15-trnN-GUU 130154 136473 0 6320 IRa 0.036595 224 199 283 300 yes 1.000000 2 1.000000 NA 0.968513 76.400000 trnN-GUU tRNA trnN-GUU trnN-GUU 136474 136545 1 72 IRa 0.000000 0 0 28 300 no 0.000000 1 0.000000 NA 1.000000 20.900000 IGS_126 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 136546 137173 0 628 IRa 0.001610 1 7 100 118 no 1.000000 2 1.000000 NA 0.988854 53.300000 trnR-ACG tRNA trnR-ACG trnR-ACG 137174 137247 -1 74 IRa 0.000000 0 0 294 44 no 0.000000 1 0.000000 NA 1.000000 22.100000 IGS_127 igs trnR-ACG|rrn5S trnR-ACG-rrn5S 137248 137481 0 234 IRa 0.017094 4 0 300 119 no 1.000000 2 1.000000 NA 1.000000 56.300000 rrn5S rRNA rrn5S rrn5S 137482 137612 -1 131 IRa 0.007634 1 0 72 114 no 1.000000 2 1.000000 NA 1.000000 47.300000 IGS_128 igs rrn5S|rrn23S rrn5S-rrn23S 137613 138028 0 416 IRa 0.007212 3 0 11 300 no 1.000000 2 1.000000 NA 1.000000 44.900000 rrn23S rRNA rrn23S rrn23S 138029 140838 -1 2810 IRa 0.001068 3 0 275 15 no 1.000000 2 1.000000 NA 1.000000 42.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 140467 140569 -1 103 IRa 0.009709 1 0 300 7 no 1.000000 2 1.000000 NA 1.000000 43.600000 IGS_130 igs rrn4.5S|trnA-UGC rrn4.5S-trnA-UGC 140570 140990 0 421 IRa 0.004751 2 0 81 274 no 1.000000 2 1.000000 NA 1.000000 48.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 140991 141026 -1 36 IRa 0.000000 0 0 136 238 no 0.000000 1 0.000000 NA 1.000000 28.900000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 141827 141863 -1 37 IRa 0.000000 0 0 300 257 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_133 igs trnA-UGC|trnE-UUC trnA-UGC-trnE-UUC 141864 141927 0 64 IRa 0.000000 0 0 300 193 no 0.000000 1 0.000000 NA 1.000000 33.200000 trnE-UUC_part2 tRNA trnE-UUC trnE-UUC 141928 141967 -1 40 IRa 0.000000 0 0 300 153 no 0.000000 1 0.000000 NA 1.000000 30.200000 trnE-UUC_part1 tRNA trnE-UUC trnE-UUC 142913 142944 -1 32 IRa 0.000000 0 0 37 300 no 0.000000 1 0.000000 NA 1.000000 21.500000 IGS_136 igs trnE-UUC|trnV-GAC trnE-UUC-trnV-GAC 142945 144964 0 2020 IRa 0.001496 3 14 69 300 no 1.000000 2 1.000000 NA 0.993069 49.400000 trnV-GAC tRNA trnV-GAC trnV-GAC 144965 145036 -1 72 IRa 0.000000 0 0 78 300 no 0.000000 1 0.000000 NA 1.000000 24.600000 IGS_137 igs trnV-GAC|rrn16S trnV-GAC-rrn16S 145037 145895 0 859 IRa 0.001543 1 211 150 300 no 1.000000 2 1.000000 NA 0.754366 55.200000 rrn16S rRNA rrn16S rrn16S 145896 147388 -1 1493 IRa 0.008487 12 79 279 300 no 1.000000 2 1.000000 NA 0.947086 68.300000 rps12_part2 gene rps12 rps12 146957 147199 1 243 IRa 0.000000 0 0 60 146 no 0.000000 1 0.000000 NA 1.000000 23.200000 IGS_139 igs rps12|rps7 rps12-rps7 147200 147804 0 605 IRa 0.001653 1 0 300 201 no 1.000000 2 1.000000 NA 1.000000 59.700000 rps7 gene rps7 rps7 147805 148272 1 468 IRa 0.006410 3 0 300 300 no 1.000000 2 1.000000 NA 1.000000 59.700000 IGS_140 igs rps7|ndhB rps7-ndhB 148273 148947 0 675 IRa 0.006088 4 18 48 172 no 1.000000 2 1.000000 NA 0.973333 53.400000 ndhB gene ndhB ndhB 148948 150773 1 1826 IRa 0.001652 3 10 276 300 no 1.000000 2 1.000000 NA 0.994524 59.600000 IGS_141 igs ndhB|trnL-CAA ndhB-trnL-CAA 150774 151350 0 577 IRa 0.004141 2 94 300 193 no 1.000000 2 1.000000 NA 0.837088 61.700000 trnL-CAA tRNA trnL-CAA trnL-CAA 151351 151431 1 81 IRa 0.000000 0 0 80 112 no 0.000000 1 0.000000 NA 1.000000 24.800000 IGS_142 igs trnL-CAA|ycf15 trnL-CAA-ycf15 151432 151901 0 470 IRa 0.006522 3 10 161 300 no 1.000000 2 1.000000 NA 0.978723 58.900000 ycf15 gene ycf15 ycf15 151902 152135 -1 234 IRa 0.000000 0 1 261 196 no 1.000000 2 1.000000 NA 0.995726 52.600000 IGS_143 igs ycf15|trnM-CAU ycf15-trnM-CAU 152136 160173 0 8038 IRa 0.014305 104 768 300 300 no 1.000000 2 1.000000 NA 0.904454 64.100000 trnM-CAU tRNA trnM-CAU trnM-CAU 160174 160247 1 74 IRa 0.000000 0 0 281 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_144 igs trnM-CAU|rpl23 trnM-CAU-rpl23 160248 160543 0 296 IRa 0.000000 0 116 300 39 no 1.000000 2 1.000000 NA 0.608108 35.700000 rpl23 gene rpl23 rpl23 160544 160825 1 282 IRa 0.007407 2 12 300 159 no 1.000000 2 1.000000 NA 0.957447 57.800000 IGS_145 igs rpl23|trnH-GUG rpl23-trnH-GUG 160826 1 0 101 IRa 0.000000 0 0 177 58 no 0.000000 1 0.000000 NA 1.000000 23.100000