primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score rps16-trnQ-UUG_p1 rps16-trnQ-UUG 1 AAGTCGCACGTTGCTTTCTA GAGGTTCGAATCCTTCCGTC 20 20 45.0 55.0 58.1 58.1 8.1 16.9 0.215425 5837 7239 1450-1476 1.000000 80.6 rps16-trnQ-UUG_p2 rps16-trnQ-UUG 2 TCATGTCCTTCAAGTCGCAC GAGGTTCGAATCCTTCCGTC 20 20 50.0 55.0 58.2 58.1 0.0 16.9 0.280333 5837 7239 1461-1487 1.000000 80.0 rps16-trnQ-UUG_p3 rps16-trnQ-UUG 3 AAGTCGCACGTTGCTTTCTA ATAAATCGAAGTGGGGCGTG 20 20 45.0 50.0 58.1 58.3 8.1 0.0 0.475629 5837 7239 1509-1535 1.000000 78.4 rps16-trnQ-UUG_p4 rps16-trnQ-UUG 4 CCACAGCTGATCATGTCCTT GAGGTTCGAATCCTTCCGTC 20 20 50.0 55.0 57.6 58.1 23.3 16.9 0.491095 5837 7239 1471-1497 1.000000 78.3 rps16-trnQ-UUG_p5 rps16-trnQ-UUG 5 TCCACAGCTGATCATGTCCT GAGGTTCGAATCCTTCCGTC 20 20 50.0 55.0 58.4 58.1 23.3 16.9 0.499524 5837 7239 1472-1498 1.000000 78.3 trnS-GCU-trnG-GCC_p1 trnS-GCU-trnG-GCC 1 CAATCCGACGCTTTAGTCCA TGTTCGGAATACAAAGAAAACCG 20 23 50.0 39.1 58.0 57.9 0.0 0.0 3.102801 8562 9196 759-761 1.000000 56.3 trnS-GCU-trnG-GCC_p2 trnS-GCU-trnG-GCC 2 AATCCGACGCTTTAGTCCAC TGTTCGGAATACAAAGAAAACCG 20 23 50.0 39.1 58.0 57.9 0.0 0.0 3.104189 8562 9196 758-760 1.000000 56.3 trnS-GCU-trnG-GCC_p3 trnS-GCU-trnG-GCC 3 GCTCGTACAACGGATTAGCA TGTTCGGAATACAAAGAAAACCG 20 23 50.0 39.1 58.1 57.9 0.0 0.0 3.180946 8562 9196 777-779 1.000000 55.7 trnS-GCU-trnG-GCC_p4 trnS-GCU-trnG-GCC 4 CAATCCGACGCTTTAGTCCA CGAAGGACCCCTTAACTATTAGG 20 23 50.0 47.8 58.0 57.8 0.0 0.0 3.215757 8562 9196 738-740 1.000000 55.5 trnS-GCU-trnG-GCC_p5 trnS-GCU-trnG-GCC 5 AATCCGACGCTTTAGTCCAC CGAAGGACCCCTTAACTATTAGG 20 23 50.0 47.8 58.0 57.8 0.0 0.0 3.217145 8562 9196 737-739 1.000000 55.5 trnG-GCC_p1 trnG-GCC 1 GTCACCTGACAAAAGGCAGA AGGAACAGTTGGAACGCTTT 20 20 50.0 45.0 58.0 57.9 0.0 0.0 0.085464 9197 9964 1253-1281 1.000000 82.0 trnG-GCC_p2 trnG-GCC 2 CAATCCGACGCTTTAGTCCA AGGAACAGTTGGAACGCTTT 20 20 50.0 45.0 58.0 57.9 0.0 0.0 0.057365 9197 9964 1816-1842 1.000000 81.9 trnG-GCC_p3 trnG-GCC 3 AATCCGACGCTTTAGTCCAC AGGAACAGTTGGAACGCTTT 20 20 50.0 45.0 58.0 57.9 0.0 0.0 0.058753 9197 9964 1815-1841 1.000000 81.8 trnG-GCC_p4 trnG-GCC 4 CAATCCGACGCTTTAGTCCA CAATGGACGCGTTTCATTCC 20 20 50.0 50.0 58.0 58.1 0.0 27.3 0.109531 9197 9964 1682-1682 0.500000 59.1 trnG-GCC_p5 trnG-GCC 5 AATCCGACGCTTTAGTCCAC CAATGGACGCGTTTCATTCC 20 20 50.0 50.0 58.0 58.1 0.0 27.3 0.110919 9197 9964 1681-1681 0.500000 59.1 trnG-GCC-trnR-UCU_p1 trnG-GCC-trnR-UCU 1 TCCTGAGTTGACGTCGACTA AGGTTTAGAAGACCTATGTCCT 20 22 50.0 40.9 57.8 55.6 33.2 0.0 4.548780 9965 10198 324-348 1.000000 50.0 trnG-GCC-trnR-UCU_p2 trnG-GCC-trnR-UCU 2 TAGCCTTCCAAGCTACCGAT AGGTTTAGAAGACCTATGTCCT 20 22 50.0 40.9 58.2 55.6 0.0 0.0 4.584894 9965 10198 297-321 1.000000 49.9 trnG-GCC-trnR-UCU_p3 trnG-GCC-trnR-UCU 3 TCCTGAGTTGACGTCGACTA AGAAGACCTATGTCCTATCCA 20 21 50.0 42.9 57.8 54.6 33.2 0.0 4.578862 9965 10198 318-342 1.000000 49.8 trnG-GCC-trnR-UCU_p4 trnG-GCC-trnR-UCU 4 TAGCCTTCCAAGCTACCGAT AGAAGACCTATGTCCTATCCA 20 21 50.0 42.9 58.2 54.6 0.0 0.0 4.614976 9965 10198 291-315 1.000000 49.7 trnG-GCC-trnR-UCU_p5 trnG-GCC-trnR-UCU 5 TCCTGAGTTGACGTCGACTA ACCAAAGGTTTAGAAGACCTATGT 20 24 50.0 37.5 57.8 57.6 33.2 0.0 4.624193 9965 10198 329-353 1.000000 49.4 rps2-rpoC2_p1 rps2-rpoC2 1 ACCAAAATGAACTCCCGCTT ACATCAGAACAATCATTTCTGGG 20 23 45.0 39.1 58.0 57.1 0.0 11.2 3.914244 15424 15733 412-423 1.000000 51.4 rps2-rpoC2_p2 rps2-rpoC2 2 AATGAACTCCCGCTTCCATC ACATCAGAACAATCATTTCTGGG 20 23 50.0 39.1 58.0 57.1 0.0 11.2 3.953743 15424 15733 407-418 1.000000 51.1 rps2-rpoC2_p3 rps2-rpoC2 3 CCCGCTTCCATCATCTCTTC ACATCAGAACAATCATTTCTGGG 20 23 55.0 39.1 58.1 57.1 0.0 11.2 4.033299 15424 15733 399-410 1.000000 50.5 rps2-rpoC2_p4 rps2-rpoC2 4 CCGCTTCCATCATCTCTTCC ACATCAGAACAATCATTTCTGGG 20 23 55.0 39.1 58.1 57.1 0.0 11.2 4.033299 15424 15733 398-409 1.000000 50.5 rps2-rpoC2_p5 rps2-rpoC2 5 ATATAAGGTGCCATTCGCGG ACATCAGAACAATCATTTCTGGG 20 23 50.0 39.1 58.2 57.1 6.1 11.2 4.101210 15424 15733 453-464 1.000000 49.6 trnC-GCA-petN_p1 trnC-GCA-petN 1 TTTCCCCAGTTCAAATCCGG CAGCCCAAGCAAGACTTACT 20 20 50.0 50.0 58.1 57.8 0.0 0.0 0.273256 27319 28185 899-932 1.000000 81.3 trnC-GCA-petN_p2 trnC-GCA-petN 2 TTTCCCCAGTTCAAATCCGG TTAAACCAGCCCAAGCAAGA 20 20 50.0 45.0 58.1 57.6 0.0 0.0 0.455463 27319 28185 905-938 1.000000 79.8 trnC-GCA-petN_p3 trnC-GCA-petN 3 TTTCCCCAGTTCAAATCCGG TAAACCAGCCCAAGCAAGAC 20 20 50.0 50.0 58.1 58.4 0.0 0.0 0.465969 27319 28185 904-937 1.000000 79.7 trnC-GCA-petN_p4 trnC-GCA-petN 4 GGGGGACTGCAAATCCTTTT CAGCCCAAGCAAGACTTACT 20 20 50.0 50.0 58.4 57.8 14.7 0.0 0.546619 27319 28185 917-950 1.000000 79.1 trnC-GCA-petN_p5 trnC-GCA-petN 5 TTTCCCCAGTTCAAATCCGG TTAGAGTCCACTTCGTCCCC 20 20 50.0 55.0 58.1 58.4 0.0 0.0 0.528422 27319 28185 961-994 1.000000 79.0 psbZ-trnG-UCC_p1 psbZ-trnG-UCC 1 TTGCTTCTCCTGATGGTTGG CGTCTTCTCCTTGGCAAAGA 20 20 50.0 50.0 57.8 57.8 0.0 1.1 0.374855 34583 35309 884-932 1.000000 79.2 psbZ-trnG-UCC_p2 psbZ-trnG-UCC 2 GCTTCTCCTGATGGTTGGTC CGTCTTCTCCTTGGCAAAGA 20 20 55.0 50.0 58.3 57.8 0.0 1.1 0.425837 34583 35309 882-930 1.000000 78.8 psbZ-trnG-UCC_p3 psbZ-trnG-UCC 3 AGTCTTTTTGGTGGGGATCC CGTCTTCTCCTTGGCAAAGA 20 20 50.0 50.0 57.4 57.8 1.9 1.1 0.774744 34583 35309 814-862 1.000000 76.2 psbZ-trnG-UCC_p4 psbZ-trnG-UCC 4 GTCTTTTTGGTGGGGATCCT CGTCTTCTCCTTGGCAAAGA 20 20 50.0 50.0 57.4 57.8 12.6 1.1 0.774744 34583 35309 813-861 1.000000 76.2 psbZ-trnG-UCC_p5 psbZ-trnG-UCC 5 TCTCCTGATGGTTGGTCAAC CGTCTTCTCCTTGGCAAAGA 20 20 50.0 50.0 57.1 57.8 5.3 1.1 1.028998 34583 35309 879-927 1.000000 74.0 psaA-ycf3_p1 psaA-ycf3 1 GCCCATTCCTCGAAAGAAGT CAGAGGCTTGGTTCGATCAA 20 20 50.0 50.0 57.9 57.9 4.1 0.0 0.214484 40657 41331 838-868 1.000000 81.4 psaA-ycf3_p2 psaA-ycf3 2 GCCCATTCCTCGAAAGAAGT TTGAAGATCACGAGGCGTTT 20 20 50.0 45.0 57.9 57.8 4.1 0.0 0.279161 40657 41331 752-782 1.000000 81.2 psaA-ycf3_p3 psaA-ycf3 3 GCCCATTCCTCGAAAGAAGT ATAGCACTTACTCCCGGGAA 20 20 50.0 50.0 57.9 57.8 4.1 26.7 0.285355 40657 41331 794-824 1.000000 81.0 psaA-ycf3_p4 psaA-ycf3 4 GCCCATTCCTCGAAAGAAGT TAGCACTTACTCCCGGGAAT 20 20 50.0 50.0 57.9 57.8 4.1 26.7 0.285355 40657 41331 793-823 1.000000 81.0 psaA-ycf3_p5 psaA-ycf3 5 GCCCATTCCTCGAAAGAAGT TTGGTTGAAGATCACGAGGC 20 20 50.0 50.0 57.9 58.2 4.1 0.0 0.306932 40657 41331 756-786 1.000000 81.0 trnF-GAA-ndhJ_p1 trnF-GAA-ndhJ 1 GGGATAGCTCAGCTGGTAGA ATCCCCGCTTGAAACGTATC 20 20 55.0 50.0 58.0 58.1 10.3 0.0 0.053040 46218 46865 822-823 1.000000 80.9 trnF-GAA-ndhJ_p2 trnF-GAA-ndhJ 2 CCTCGTGTCACCAGTTCAAA ATCCCCGCTTGAAACGTATC 20 20 50.0 50.0 58.1 58.1 0.0 0.0 0.102430 46218 46865 786-787 1.000000 80.6 trnF-GAA-ndhJ_p3 trnF-GAA-ndhJ 3 CTGGTAGAGCAGAGGACTGA ATCCCCGCTTGAAACGTATC 20 20 55.0 50.0 57.9 58.1 2.5 0.0 0.186833 46218 46865 810-811 1.000000 79.9 trnF-GAA-ndhJ_p4 trnF-GAA-ndhJ 4 GATACGGAAAGGATGGTCGG ATCCCCGCTTGAAACGTATC 20 20 55.0 50.0 57.8 58.1 0.0 0.0 0.200932 46218 46865 840-841 1.000000 79.7 trnF-GAA-ndhJ_p5 trnF-GAA-ndhJ 5 GAAAGGATGGTCGGGATAGC ATCCCCGCTTGAAACGTATC 20 20 55.0 50.0 57.8 58.1 0.0 0.0 0.221875 46218 46865 834-835 1.000000 79.6 accD-psaI_p1 accD-psaI 1 CTCCACGCTTTCTTTCCCTT AAAGAAGCCATTGCCATTGC 20 20 50.0 45.0 58.1 57.9 0.0 0.0 0.205977 56655 57214 671-676 1.000000 79.7 accD-psaI_p2 accD-psaI 2 CTCCACGCTTTCTTTCCCTT ATTGCCATTGCCGGAAAAAC 20 20 50.0 45.0 58.1 58.2 0.0 5.0 0.295301 56655 57214 662-667 1.000000 79.0 accD-psaI_p3 accD-psaI 3 CTCCACGCTTTCTTTCCCTT CATTGCCATTGCCGGAAAAA 20 20 50.0 45.0 58.1 58.2 0.0 5.0 0.296571 56655 57214 663-668 1.000000 78.9 accD-psaI_p4 accD-psaI 4 CTCCACGCTTTCTTTCCCTT GCCATTGCCGGAAAAACTAG 20 20 50.0 50.0 58.1 57.7 0.0 5.0 0.380466 56655 57214 659-664 1.000000 78.3 accD-psaI_p5 accD-psaI 5 CTCCACGCTTTCTTTCCCTT TGCCATTGCCGGAAAAACTA 20 20 50.0 45.0 58.1 58.4 0.0 5.0 0.480448 56655 57214 660-665 1.000000 77.5 psbF-psbE_p1 psbF-psbE 1 GTCCGTGAATAGCCAACCAT TGTGTTTGGAAGTCCTCGAC 20 20 50.0 50.0 58.0 57.8 0.0 0.0 0.272687 61525 61533 185-185 1.000000 78.3 psbF-psbE_p2 psbF-psbE 2 ACGGTAGGTACAGCTAGTCC TGTGTTTGGAAGTCCTCGAC 20 20 55.0 50.0 58.0 57.8 0.0 0.0 0.284188 61525 61533 201-201 1.000000 78.1 psbF-psbE_p3 psbF-psbE 3 GGTAGGTACAGCTAGTCCGT TGTGTTTGGAAGTCCTCGAC 20 20 55.0 50.0 58.0 57.8 0.0 0.0 0.284188 61525 61533 199-199 1.000000 78.1 psbF-psbE_p4 psbF-psbE 4 GTCCGTGAATAGCCAACCAT GTTTGGAAGTCCTCGACCAA 20 20 50.0 50.0 58.0 57.8 0.0 0.0 0.288230 61525 61533 182-182 1.000000 78.1 psbF-psbE_p5 psbF-psbE 5 GTCCGTGAATAGCCAACCAT TTGGAAGTCCTCGACCAAAC 20 20 50.0 50.0 58.0 57.8 0.0 0.7 0.288230 61525 61533 180-180 1.000000 78.1 rps19-rpl2_p1 rps19-rpl2 1 GCCCGGGACCAAGTTACTAT GGGCCCCAATTGGTAGAAAA 20 20 55.0 50.0 59.2 58.1 29.3 22.9 1.219144 81152 81205 283-283 1.000000 70.8 rps19-rpl2_p2 rps19-rpl2 2 GCCCGGGACCAAGTTACTAT TTGATTCTTCGTCGCCGTAG 20 20 55.0 50.0 59.2 58.1 29.3 0.0 1.260580 81152 81205 191-191 1.000000 70.8 rps19-rpl2_p3 rps19-rpl2 3 GCCCGGGACCAAGTTACTAT AGAAAAAGACCCACAACCCC 20 20 55.0 50.0 59.2 57.9 29.3 0.0 1.246864 81152 81205 269-269 1.000000 70.6 rps19-rpl2_p4 rps19-rpl2 4 GCCCGGGACCAAGTTACTAT GAAAAAGACCCACAACCCCT 20 20 55.0 50.0 59.2 57.9 29.3 0.0 1.246864 81152 81205 268-268 1.000000 70.6 rps19-rpl2_p5 rps19-rpl2 5 GCCCGGGACCAAGTTACTAT CACAACCCCTTGGGGTTATC 20 20 55.0 55.0 59.2 58.2 29.3 35.0 1.317396 81152 81205 258-258 1.000000 70.1 ndhF_p1 ndhF 1 GGATGGGAATCAAGAAACTTCG AGGATCTGGTGAATTAGAAACCA 22 23 45.5 39.1 57.4 57.2 0.0 0.0 6.401942 106782 108998 2296-2656 1.000000 40.5 ndhF_p2 ndhF 2 TCTGGATGGGAATCAAGAAACT AGGATCTGGTGAATTAGAAACCA 22 23 40.9 39.1 57.1 57.2 0.0 0.0 6.714038 106782 108998 2299-2659 1.000000 40.5 ndhF_p3 ndhF 3 GGATGGGAATCAAGAAACTTCG GGATCTGGTGAATTAGAAACCA 22 22 45.5 40.9 57.4 55.8 0.0 0.0 6.836656 106782 108998 2295-2655 1.000000 40.5 ndhF_p4 ndhF 4 GGATGGGAATCAAGAAACTTCG AGGATCTGGTGAATTAGAAACCAT 22 24 45.5 37.5 57.4 57.7 0.0 0.0 6.955677 106782 108998 2296-2656 1.000000 40.5 ndhF_p5 ndhF 5 TCTGGATGGGAATCAAGAAACTT AGGATCTGGTGAATTAGAAACCA 23 23 39.1 39.1 57.7 57.2 0.0 0.0 7.040281 106782 108998 2299-2659 1.000000 40.5 trnL-UAG-ccsA_p1 trnL-UAG-ccsA 1 CTTGAGCATCTCGGTTCGAA TCATCGACAACTAAGCTTATCA 20 22 50.0 36.4 58.0 55.0 0.0 6.6 4.960572 110358 110430 204-205 1.000000 41.5 trnL-UAG-ccsA_p2 trnL-UAG-ccsA 2 CTTGAGCATCTCGGTTCGAA TTTCATCGACAACTAAGCTT 20 20 50.0 35.0 58.0 52.9 0.0 3.5 5.141136 110358 110430 206-207 1.000000 41.2 trnL-UAG-ccsA_p3 trnL-UAG-ccsA 3 TAGACACGCTGCTCTTAGGA TCATCGACAACTAAGCTTATCA 20 22 50.0 36.4 57.9 55.0 0.0 6.6 5.081141 110358 110430 231-232 1.000000 41.0 trnL-UAG-ccsA_p4 trnL-UAG-ccsA 4 AAATTGGTAGACACGCTGCT TCATCGACAACTAAGCTTATCA 20 22 45.0 36.4 57.8 55.0 0.0 6.6 5.141868 110358 110430 238-239 1.000000 41.0 trnL-UAG-ccsA_p5 trnL-UAG-ccsA 5 GTAGACACGCTGCTCTTAGG TCATCGACAACTAAGCTTATCA 20 22 55.0 36.4 57.8 55.0 0.0 6.6 5.153159 110358 110430 232-233 1.000000 41.0 ccsA_p1 ccsA 1 CTTGAGCATCTCGGTTCGAA TGCATTACCGGGAATGAGTG 20 20 50.0 50.0 58.0 58.0 0.0 38.4 0.040666 110431 111390 1662-1664 1.000000 80.7 ccsA_p2 ccsA 2 CTTGAGCATCTCGGTTCGAA GCGGGACCACGAGAATTATT 20 20 50.0 50.0 58.0 58.1 0.0 6.6 0.054243 110431 111390 1451-1453 1.000000 80.7 ccsA_p3 ccsA 3 TGGCGGCATACTCTCTTCTA TGCATTACCGGGAATGAGTG 20 20 50.0 50.0 57.9 58.0 8.0 38.4 0.104323 110431 111390 1636-1638 1.000000 80.2 ccsA_p4 ccsA 4 CTTGAGCATCTCGGTTCGAA GCTCTTGACGACTGCAACTA 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.069701 110431 111390 1148-1149 1.000000 80.0 ccsA_p5 ccsA 5 CTTGAGCATCTCGGTTCGAA CTTCACTTGCATTACCGGGA 20 20 50.0 50.0 58.0 57.9 0.0 6.3 0.111658 110431 111390 1671-1671 0.500000 59.1 ccsA-ndhD_p1 ccsA-ndhD 1 GCAATTGTAGCTTCTATGGGC TGGTATTTACCCGGATTTCGT 21 21 47.6 42.9 57.4 57.1 7.4 0.7 3.543424 111391 111641 440-441 1.000000 53.8 ccsA-ndhD_p2 ccsA-ndhD 2 CCGCAATTGTAGCTTCTATGG TGGTATTTACCCGGATTTCGT 21 21 47.6 42.9 57.1 57.1 7.4 0.7 3.796052 111391 111641 442-443 1.000000 51.8 ccsA-ndhD_p3 ccsA-ndhD 3 CGCAATTGTAGCTTCTATGGG TGGTATTTACCCGGATTTCGT 21 21 47.6 42.9 57.1 57.1 7.4 0.7 3.796052 111391 111641 441-442 1.000000 51.8 ccsA-ndhD_p4 ccsA-ndhD 4 GCAATTGTAGCTTCTATGGGC TGGTATTTACCCGGATTTCGTT 21 22 47.6 40.9 57.4 57.8 7.4 0.7 3.852119 111391 111641 440-441 1.000000 51.4 ccsA-ndhD_p5 ccsA-ndhD 5 GCAATTGTAGCTTCTATGGGC TTGGTATTTACCCGGATTTCGT 21 22 47.6 40.9 57.4 57.8 7.4 0.7 3.852119 111391 111641 441-442 1.000000 51.4 ycf1_p1 ycf1 1 AGACCACTTTTGTTAATCCAGT CCGTTCTATCTGAAACCTTGGT 22 22 36.4 45.5 55.6 58.1 0.0 0.0 6.506765 122039 122158 263-266 1.000000 42.1 ycf1_p2 ycf1 2 AGACCACTTTTGTTAATCCAGT TCCGTTCTATCTGAAACCTTGG 22 22 36.4 45.5 55.6 57.8 0.0 0.0 6.648076 122039 122158 264-267 1.000000 42.1 ycf1_p3 ycf1 3 AGACCACTTTTGTTAATCCAGT AGTGGTGTTCAACTATCCGA 22 20 36.4 45.0 55.6 56.2 0.0 0.0 6.252304 122039 122158 338-341 1.000000 41.6 ycf1_p4 ycf1 4 AGACCACTTTTGTTAATCCAGT AGTGGTGTTCAACTATCCGAA 22 21 36.4 42.9 55.6 57.0 0.0 0.0 6.487414 122039 122158 338-341 1.000000 41.6 ycf1_p5 ycf1 5 AGACCACTTTTGTTAATCCAGTT AGTGGTGTTCAACTATCCGA 23 20 34.8 45.0 56.3 56.2 0.0 0.0 6.517310 122039 122158 338-341 1.000000 41.6