feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 146 180 -1 35 Genome 0.019048 1 0 0 3 no 0.333333 2 0.500000 0.019048 1.000000 37.100000 matK gene matK matK 422 2020 -1 1599 Genome 0.036386 84 11 1 5 no 1.000000 3 1.000000 0.036470 0.996873 67.300000 IGS_003 igs matK|trnK-UUU matK-trnK-UUU 2021 2643 0 623 Genome 0.052404 48 8 57 47 no 1.000000 3 1.000000 0.052508 0.990369 80.700000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 2644 2680 -1 37 Genome 0.000000 0 0 26 10 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_004 igs trnK-UUU|rps16 trnK-UUU-rps16 2681 3559 0 879 Genome 0.077816 78 493 63 12 no 1.000000 3 1.000000 0.062454 0.980660 78.200000 rps16 gene rps16 rps16 3560 3826 -1 267 Genome 0.027466 11 0 13 1 no 1.000000 3 1.000000 0.027466 1.000000 55.100000 IGS_005 igs rps16|trnQ-UUG rps16-trnQ-UUG 3827 4694 0 868 Genome 0.065352 82 40 43 81 yes 1.000000 3 1.000000 0.064667 0.993088 86.400000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 4695 4766 -1 72 Genome 0.000000 0 0 6 9 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_006 igs trnQ-UUG|trnS-GCU trnQ-UUG-trnS-GCU 4767 5304 0 538 Genome 0.063046 47 51 78 38 yes 1.000000 3 1.000000 0.058784 0.992565 83.800000 trnS-GCU tRNA trnS-GCU trnS-GCU 5305 5391 -1 87 Genome 0.007663 1 0 0 0 no 0.333333 2 0.500000 0.007663 1.000000 29.900000 IGS_007 igs trnS-GCU|trnR-UCU trnS-GCU-trnR-UCU 5392 6188 0 797 Genome 0.093501 104 113 48 44 yes 1.000000 3 1.000000 0.095506 0.997491 86.800000 trnR-UCU tRNA trnR-UCU trnR-UCU 6189 6260 1 72 Genome 0.018519 2 0 32 18 no 1.000000 3 1.000000 0.018519 1.000000 50.700000 IGS_008 igs trnR-UCU|atpA trnR-UCU-atpA 6261 6301 0 41 Genome 0.048780 3 0 26 2 no 1.000000 3 1.000000 0.048780 1.000000 68.700000 atpA gene atpA atpA 6302 7855 -1 1554 Genome 0.022952 51 0 3 21 no 1.000000 3 1.000000 0.022963 1.000000 58.300000 IGS_009 igs atpA|atpH atpA-atpH 7856 9526 0 1671 Genome 0.040992 99 16 7 28 no 1.000000 3 1.000000 0.040375 0.997606 70.800000 atpH gene atpH atpH 9527 9772 -1 246 Genome 0.032520 12 0 1 0 no 1.000000 3 1.000000 0.032520 1.000000 58.200000 IGS_010 igs atpH|atpI atpH-atpI 9773 10305 0 533 Genome 0.062821 46 29 6 5 yes 1.000000 3 1.000000 0.057468 0.975610 81.100000 atpI gene atpI atpI 10306 11049 -1 744 Genome 0.021505 24 0 6 16 no 1.000000 3 1.000000 0.021505 1.000000 57.900000 IGS_011 igs atpI|rps2 atpI-rps2 11050 11260 0 211 Genome 0.055292 17 6 20 5 no 1.000000 3 1.000000 0.053196 1.000000 73.700000 rps2 gene rps2 rps2 11261 11971 -1 711 Genome 0.029067 31 0 24 15 no 1.000000 3 1.000000 0.029067 1.000000 63.400000 IGS_012 igs rps2|trnC-GCA rps2-trnC-GCA 11972 12380 0 409 Genome 0.068966 40 75 34 4 no 1.000000 3 1.000000 0.069478 0.992665 79.000000 trnC-GCA tRNA trnC-GCA trnC-GCA 12381 12452 1 72 Genome 0.027778 3 0 5 12 no 1.000000 3 1.000000 0.027778 1.000000 55.600000 IGS_013 igs trnC-GCA|trnD-GUC trnC-GCA-trnD-GUC 12453 13428 0 976 Genome 0.060386 78 134 26 48 yes 1.000000 3 1.000000 0.054892 0.989754 82.800000 trnD-GUC tRNA trnD-GUC trnD-GUC 13429 13502 -1 74 Genome 0.009009 1 0 2 3 no 0.333333 2 0.500000 0.009009 1.000000 30.900000 IGS_014 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 13503 13603 0 101 Genome 0.066007 10 0 25 89 no 1.000000 3 1.000000 0.066007 1.000000 74.300000 trnY-GUA tRNA trnY-GUA trnY-GUA 13604 13687 -1 84 Genome 0.000000 0 0 20 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_015 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 13688 13752 0 65 Genome 0.043716 4 22 104 86 no 1.000000 3 1.000000 0.057441 0.938462 72.600000 trnE-UUC tRNA trnE-UUC trnE-UUC 13753 13824 -1 72 Genome 0.000000 0 0 1 14 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_016 igs trnE-UUC|trnT-GGU trnE-UUC-trnT-GGU 13825 14395 0 571 Genome 0.042105 36 8 73 2 no 1.000000 3 1.000000 0.042454 0.998249 71.700000 trnT-GGU tRNA trnT-GGU trnT-GGU 14396 14467 1 72 Genome 0.027778 3 0 2 33 no 1.000000 3 1.000000 0.027778 1.000000 55.400000 IGS_017 igs trnT-GGU|trnS-UGA trnT-GGU-trnS-UGA 14468 15968 0 1501 Genome 0.102981 170 1181 1 32 yes 1.000000 3 1.000000 0.120704 0.983344 78.600000 trnS-UGA tRNA trnS-UGA trnS-UGA 15969 16054 -1 86 Genome 0.015504 2 0 6 14 no 0.333333 2 0.500000 0.015504 1.000000 35.300000 IGS_018 igs trnS-UGA|trnG-UCC trnS-UGA-trnG-UCC 16055 16762 0 708 Genome 0.073550 76 14 28 35 yes 1.000000 3 1.000000 0.073464 0.998588 83.100000 trnG-UCC tRNA trnG-UCC trnG-UCC 16763 16831 1 69 Genome 0.019324 2 0 55 38 no 1.000000 3 1.000000 0.019324 1.000000 52.700000 IGS_019 igs trnG-UCC|trnfM-CAU trnG-UCC-trnfM-CAU 16832 17010 0 179 Genome 0.054264 14 9 2 74 no 1.000000 3 1.000000 0.054674 0.960894 74.800000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 17011 17084 -1 74 Genome 0.000000 0 0 7 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_020 igs trnfM-CAU|rps14 trnfM-CAU-rps14 17085 17232 0 148 Genome 0.119221 24 12 81 69 yes 1.000000 3 1.000000 0.119758 0.925676 81.400000 rps14 gene rps14 rps14 17233 17535 -1 303 Genome 0.015402 7 0 16 44 no 1.000000 3 1.000000 0.015402 1.000000 48.600000 IGS_021 igs rps14|trnS-GGA rps14-trnS-GGA 17536 19731 0 2196 Genome 0.137385 327 1058 44 38 yes 1.000000 3 1.000000 0.123884 0.891621 78.900000 trnS-GGA tRNA trnS-GGA trnS-GGA 19732 19818 1 87 Genome 0.015326 2 0 0 17 no 1.000000 3 1.000000 0.015326 1.000000 47.300000 IGS_022 igs trnS-GGA|rps4 trnS-GGA-rps4 19819 20038 0 220 Genome 0.073733 23 3 16 3 no 1.000000 3 1.000000 0.073733 0.986364 74.000000 rps4 gene rps4 rps4 20039 20650 -1 612 Genome 0.031046 28 0 3 22 no 1.000000 3 1.000000 0.031046 1.000000 63.700000 IGS_023 igs rps4|trnT-UGU rps4-trnT-UGU 20651 20925 0 275 Genome 0.047273 19 4 11 33 no 1.000000 3 1.000000 0.047738 1.000000 69.900000 trnT-UGU tRNA trnT-UGU trnT-UGU 20926 20998 -1 73 Genome 0.041667 4 1 4 2 no 1.000000 3 1.000000 0.041667 0.986301 64.500000 IGS_024 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 20999 21382 0 384 Genome 0.079156 41 32 33 103 yes 1.000000 3 1.000000 0.077443 0.986979 81.800000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 21383 21419 1 37 Genome 0.000000 0 0 1 66 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 21913 21961 1 49 Genome 0.027211 2 0 77 16 no 0.333333 2 0.500000 0.027211 1.000000 43.500000 IGS_027 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 21962 22327 0 366 Genome 0.067952 36 5 25 89 no 1.000000 3 1.000000 0.066314 0.991803 76.900000 trnF-GAA tRNA trnF-GAA trnF-GAA 22328 22400 1 73 Genome 0.000000 0 0 4 16 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_028 igs trnF-GAA|trnM-CAU trnF-GAA-trnM-CAU 22401 22829 0 429 Genome 0.072051 44 18 77 82 yes 1.000000 3 1.000000 0.068308 0.981352 85.300000 trnM-CAU tRNA trnM-CAU trnM-CAU 22830 22901 1 72 Genome 0.000000 0 0 13 10 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_029 igs trnM-CAU|atpB trnM-CAU-atpB 22902 23535 0 634 Genome 0.071012 64 29 85 33 yes 1.000000 3 1.000000 0.069773 0.992114 86.300000 atpB gene atpB atpB 23536 25008 -1 1473 Genome 0.024457 54 1 18 32 no 1.000000 3 1.000000 0.024457 0.999321 60.800000 IGS_030 igs atpB|accD atpB-accD 25009 27235 0 2227 Genome 0.071910 196 1183 4 38 no 1.000000 3 1.000000 0.073209 0.976201 76.200000 accD gene accD accD 27236 28747 1 1512 Genome 0.046176 88 241 51 37 no 1.000000 3 1.000000 0.041152 0.922619 77.200000 IGS_031 igs accD|petG accD-petG 28748 29041 0 294 Genome 0.070115 28 22 21 9 no 1.000000 3 1.000000 0.063201 0.986395 77.700000 petG gene petG petG 29042 29176 1 135 Genome 0.061728 12 0 42 0 no 1.000000 3 1.000000 0.061728 1.000000 71.100000 IGS_032 igs petG|trnW-CCA petG-trnW-CCA 29177 29271 0 95 Genome 0.056140 8 1 23 30 no 1.000000 3 1.000000 0.056551 1.000000 73.500000 trnW-CCA tRNA trnW-CCA trnW-CCA 29272 29344 -1 73 Genome 0.009132 1 0 7 16 no 0.333333 2 0.500000 0.009132 1.000000 31.300000 IGS_033 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 29345 29499 0 155 Genome 0.060215 14 7 42 74 no 1.000000 3 1.000000 0.061842 1.000000 79.600000 trnP-UGG tRNA trnP-UGG trnP-UGG 29500 29573 -1 74 Genome 0.000000 0 0 2 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_034 igs trnP-UGG|rpl33 trnP-UGG-rpl33 29574 29961 0 388 Genome 0.047373 27 5 76 17 no 1.000000 3 1.000000 0.047715 0.997423 72.000000 rpl33 gene rpl33 rpl33 29962 30162 1 201 Genome 0.029851 9 0 11 3 no 1.000000 3 1.000000 0.029851 1.000000 56.800000 IGS_035 igs rpl33|rps18 rpl33-rps18 30163 30327 0 165 Genome 0.070393 16 16 15 24 no 1.000000 3 1.000000 0.069087 0.975758 77.900000 rps18 gene rps18 rps18 30328 30633 1 306 Genome 0.026144 12 0 17 0 no 1.000000 3 1.000000 0.026144 1.000000 54.300000 IGS_036 igs rps18|rpl20 rps18-rpl20 30634 30816 0 183 Genome 0.052823 14 55 10 4 no 1.000000 3 1.000000 0.060138 1.000000 73.000000 rpl20 gene rpl20 rpl20 30817 31203 -1 387 Genome 0.025840 15 0 3 37 no 1.000000 3 1.000000 0.025840 1.000000 56.000000 IGS_037 igs rpl20|rps12 rpl20-rps12 31204 31919 0 716 Genome 0.038390 41 10 8 40 no 1.000000 3 1.000000 0.038592 0.994413 70.300000 rps12_part1 gene rps12 rps12 31920 32033 -1 114 Genome 0.011696 2 0 13 21 no 1.000000 3 1.000000 0.011696 1.000000 45.900000 IGS_038 igs rps12|clpP rps12-clpP 32034 32181 0 148 Genome 0.090090 18 0 51 17 no 1.000000 3 1.000000 0.090090 1.000000 73.800000 clpP gene clpP clpP 32182 32727 -1 546 Genome 0.122711 98 12 3 3 no 1.000000 3 1.000000 0.125077 1.000000 80.300000 IGS_039 igs clpP|rpl36 clpP-rpl36 32728 34352 0 1625 Genome 0.094709 189 641 3 11 yes 1.000000 3 1.000000 0.100030 0.942154 79.500000 rpl36 gene rpl36 rpl36 34353 34466 -1 114 Genome 0.011696 2 0 3 83 no 1.000000 3 1.000000 0.011696 1.000000 45.200000 IGS_040 igs rpl36|rps8 rpl36-rps8 34467 34911 0 445 Genome 0.038202 25 0 62 15 no 1.000000 3 1.000000 0.038258 1.000000 65.800000 rps8 gene rps8 rps8 34912 35316 -1 405 Genome 0.023868 14 0 2 11 no 1.000000 3 1.000000 0.023868 1.000000 54.900000 IGS_041 igs rps8|rpl14 rps8-rpl14 35317 35482 0 166 Genome 0.036145 9 0 3 8 no 1.000000 3 1.000000 0.036145 1.000000 60.800000 rpl14 gene rpl14 rpl14 35483 35851 -1 369 Genome 0.016260 9 0 33 26 no 1.000000 3 1.000000 0.016260 1.000000 51.300000 IGS_042 igs rpl14|rpl16 rpl14-rpl16 35852 35975 0 124 Genome 0.049180 9 2 66 4 no 1.000000 3 1.000000 0.049180 0.983871 70.500000 rpl16 gene rpl16 rpl16 35976 37206 -1 1231 Genome 0.042459 75 38 10 24 no 1.000000 3 1.000000 0.041734 0.982128 74.300000 IGS_043 igs rpl16|rps3 rpl16-rps3 37207 37346 0 140 Genome 0.057143 12 0 44 13 no 1.000000 3 1.000000 0.057143 1.000000 71.700000 rps3 gene rps3 rps3 37347 38006 -1 660 Genome 0.027273 27 0 4 12 no 1.000000 3 1.000000 0.027368 1.000000 61.400000 IGS_044 igs rps3|rpl2 rps3-rpl2 38007 38863 0 857 Genome 0.030763 39 17 29 18 no 1.000000 3 1.000000 0.030388 0.998833 66.900000 rpl2 gene rpl2 rpl2 38864 40350 -1 1487 Genome 0.030486 67 1 11 47 no 1.000000 3 1.000000 0.030500 1.000000 64.000000 IGS_045 igs rpl2|trnH-GUG rpl2-trnH-GUG 40351 41049 0 699 Genome 0.021583 21 8 25 79 no 1.000000 3 1.000000 0.019731 0.994278 60.300000 trnH-GUG tRNA trnH-GUG trnH-GUG 41050 41123 1 74 Genome 0.000000 0 0 42 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_046 igs trnH-GUG|trnI-CAU trnH-GUG-trnI-CAU 41124 41271 0 148 Genome 0.022523 5 7 116 88 no 1.000000 3 1.000000 0.023385 1.000000 63.800000 trnI-CAU tRNA trnI-CAU trnI-CAU 41272 41345 -1 74 Genome 0.000000 0 0 38 14 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_047 igs trnI-CAU|ycf2 trnI-CAU-ycf2 41346 41401 0 56 Genome 0.059524 5 0 112 12 no 1.000000 3 1.000000 0.059524 1.000000 72.100000 ycf2 gene ycf2 ycf2 41402 47185 1 5784 Genome 0.014254 123 41 17 15 no 1.000000 3 1.000000 0.014309 0.998617 48.500000 IGS_048 igs ycf2|trnL-CAA ycf2-trnL-CAA 47186 47766 0 581 Genome 0.014103 11 124 300 189 no 1.000000 3 1.000000 0.015340 0.895009 67.900000 trnL-CAA tRNA trnL-CAA trnL-CAA 47767 47847 -1 81 Genome 0.000000 0 0 123 108 no 0.000000 1 0.000000 0.000000 1.000000 26.900000 IGS_049 igs trnL-CAA|rps7 trnL-CAA-rps7 47848 49389 0 1542 Genome 0.009740 22 21 204 220 no 1.000000 3 1.000000 0.009372 1.000000 66.400000 rps7 gene rps7 rps7 49390 49857 -1 468 Genome 0.014245 10 0 78 16 no 1.000000 3 1.000000 0.014245 1.000000 51.300000 IGS_050 igs rps7|trnV-GAC rps7-trnV-GAC 49858 52226 0 2369 Genome 0.012549 44 22 61 34 no 1.000000 3 1.000000 0.012605 0.997889 53.500000 trnV-GAC tRNA trnV-GAC trnV-GAC 52227 52295 1 69 Genome 0.009662 1 0 2 105 no 0.333333 2 0.500000 0.009662 1.000000 31.300000 IGS_051 igs trnV-GAC|rrn16 trnV-GAC-rrn16 52296 52457 0 162 Genome 0.008230 2 0 34 14 no 1.000000 3 1.000000 0.008230 1.000000 43.800000 rrn16 rRNA rrn16 rrn16 52458 53942 1 1485 Genome 0.002469 5 0 33 77 no 1.000000 3 1.000000 0.002096 1.000000 47.000000 IGS_052 igs rrn16|trnI-GAU rrn16-trnI-GAU 53943 54249 0 307 Genome 0.017372 7 49 54 64 no 1.000000 3 1.000000 0.014797 1.000000 56.900000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 54250 54285 1 36 Genome 0.000000 0 0 0 28 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 54881 54913 1 33 Genome 0.020202 1 2 8 3 no 1.000000 3 1.000000 0.020854 1.000000 56.200000 IGS_055 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 54914 54976 0 63 Genome 0.031746 3 3 5 11 no 1.000000 3 1.000000 0.032540 1.000000 63.600000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 54977 55014 1 38 Genome 0.271930 15 11 5 19 no 1.000000 3 1.000000 0.354451 1.000000 76.100000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 55818 55852 1 35 Genome NA 0 35 300 49 no 0.333333 2 0.500000 NA 0.000000 16.200000 IGS_058 igs trnA-UGC|rrn23 trnA-UGC-rrn23 55853 56021 0 169 Genome 0.034483 5 60 300 60 no 1.000000 3 1.000000 0.023903 0.686391 57.300000 rrn23 rRNA rrn23 rrn23 56022 58830 1 2809 Genome 0.003447 14 8 46 103 no 1.000000 3 1.000000 0.003319 0.998220 46.300000 IGS_059 igs rrn23|rrn4.5 rrn23-rrn4.5 58831 58933 0 103 Genome 0.000000 0 0 4 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 rrn4.5 rRNA rrn4.5 rrn4.5 58934 59036 1 103 Genome 0.012945 2 0 107 175 no 1.000000 3 1.000000 0.012945 1.000000 53.800000 IGS_060 igs rrn4.5|rrn5 rrn4.5-rrn5 59037 59265 0 229 Genome 0.011958 4 6 75 68 no 1.000000 3 1.000000 0.011958 0.973799 52.600000 rrn5 rRNA rrn5 rrn5 59266 59385 1 120 Genome 0.016667 3 0 0 13 no 1.000000 3 1.000000 0.016667 1.000000 48.100000 IGS_061 igs rrn5|trnR-ACG rrn5-trnR-ACG 59386 59463 0 78 Genome 0.051282 6 0 12 50 no 1.000000 3 1.000000 0.051282 1.000000 70.500000 trnR-ACG tRNA trnR-ACG trnR-ACG 59464 59537 1 74 Genome 0.018018 2 0 37 62 no 1.000000 3 1.000000 0.018018 1.000000 51.800000 IGS_062 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 59538 59687 0 150 Genome 0.022222 5 6 11 104 no 1.000000 3 1.000000 0.022963 1.000000 57.100000 trnN-GUU tRNA trnN-GUU trnN-GUU 59688 59760 -1 73 Genome 0.000000 0 0 3 31 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_063 igs trnN-GUU|rpl32 trnN-GUU-rpl32 59761 61098 0 1338 Genome 0.087039 134 601 76 27 no 1.000000 3 1.000000 0.078030 0.928251 80.700000 rpl32 gene rpl32 rpl32 61099 61239 1 141 Genome 0.033097 7 0 15 5 no 1.000000 3 1.000000 0.033097 1.000000 59.000000 IGS_064 igs rpl32|trnL-UAG rpl32-trnL-UAG 61240 61701 0 462 Genome 0.098131 54 228 7 96 no 1.000000 3 1.000000 0.104675 0.926407 75.800000 trnL-UAG tRNA trnL-UAG trnL-UAG 61702 61781 1 80 Genome 0.000000 0 1 15 16 no 0.333333 2 0.500000 0.000000 1.000000 27.600000 IGS_065 igs trnL-UAG|rps15 trnL-UAG-rps15 61782 64046 0 2265 Genome 0.129144 297 1455 95 7 yes 1.000000 3 1.000000 0.138454 0.807947 75.300000 rps15 gene rps15 rps15 64047 64319 -1 273 Genome 0.029304 12 0 2 1 no 1.000000 3 1.000000 0.029304 1.000000 56.300000 IGS_066 igs rps15|rps12 rps15-rps12 64320 79413 0 15094 Genome 0.033428 688 1391 19 300 yes 1.000000 3 1.000000 0.033321 0.936862 63.300000 rps12_part2 gene rps12 rps12 79414 80211 1 798 Genome 0.004177 5 0 176 22 no 1.000000 3 1.000000 0.004177 1.000000 48.100000 IGS_067 igs rps12|trnK-UUU rps12-trnK-UUU 80212 145 0 9785 Genome 0.015109 216 252 129 30 no 1.000000 3 1.000000 0.015111 0.987736 52.000000