primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score trnKUUU-rps16_p1 trnKUUU-rps16 1 ACGCACTTAAAAGCCGAGTA CTTGAAAAAGGCGCTCAACC 20 20 45.0 50.0 57.6 58.2 9.5 7.6 0.672931 4109 4866 892-963 1.000000 76.5 trnKUUU-rps16_p2 trnKUUU-rps16 2 AGTCGTGGTCTTACAAACCC CTTGAAAAAGGCGCTCAACC 20 20 50.0 50.0 57.5 58.2 0.0 7.6 0.767555 4109 4866 966-1037 1.000000 75.6 trnKUUU-rps16_p3 trnKUUU-rps16 3 GTCGTGGTCTTACAAACCCT CTTGAAAAAGGCGCTCAACC 20 20 50.0 50.0 57.5 58.2 0.0 7.6 0.767555 4109 4866 965-1036 1.000000 75.6 trnKUUU-rps16_p4 trnKUUU-rps16 4 AGACGCACTTAAAAGCCGAG CTTGAAAAAGGCGCTCAACC 20 20 50.0 50.0 58.6 58.2 9.5 7.6 0.799581 4109 4866 894-965 1.000000 75.5 trnKUUU-rps16_p5 trnKUUU-rps16 5 ACGCACTTAAAAGCCGAGTA AAGCGGGGGTTTTTACAGAA 20 20 45.0 45.0 57.6 57.6 9.5 0.0 0.812198 4109 4866 843-914 1.000000 75.5 trnLUAA-trnTUGU_p1 trnLUAA-trnTUGU 1 ACCAATTTCGCCATATCCCC GCGATGCTCTAACCTCTGAG 20 20 50.0 55.0 58.0 57.9 0.0 0.0 0.137364 16781 17892 1110-1162 1.000000 83.0 trnLUAA-trnTUGU_p2 trnLUAA-trnTUGU 2 TAGCGTCTACCAATTTCGCC GCGATGCTCTAACCTCTGAG 20 20 50.0 55.0 58.1 57.9 0.0 0.0 0.202173 16781 17892 1118-1170 1.000000 82.4 trnLUAA-trnTUGU_p3 trnLUAA-trnTUGU 3 ACCAATTTCGCCATATCCCC GGAATCGAACCGATGACCAT 20 20 50.0 50.0 58.0 57.8 0.0 15.5 0.245117 16781 17892 1142-1194 1.000000 82.0 trnLUAA-trnTUGU_p4 trnLUAA-trnTUGU 4 TAGCGTCTACCAATTTCGCC GGAATCGAACCGATGACCAT 20 20 50.0 50.0 58.1 57.8 0.0 15.5 0.309926 16781 17892 1150-1202 1.000000 81.5 trnLUAA-trnTUGU_p5 trnLUAA-trnTUGU 5 AGTCCGTAGCGTCTACCAAT GCGATGCTCTAACCTCTGAG 20 20 50.0 55.0 58.2 57.9 10.2 0.0 0.372548 16781 17892 1124-1176 1.000000 81.1 psbD-trnTGGU_p1 psbD-trnTGGU 1 GACCGGACCAACCTACAAAA GTGGTAGAGTAACGCCATGG 20 20 50.0 55.0 57.7 58.1 9.5 7.6 0.323334 31912 33339 1558-1592 1.000000 79.9 psbD-trnTGGU_p2 psbD-trnTGGU 2 GACCGGACCAACCTACAAAA TCAGTGGTAGAGTAACGCCA 20 20 50.0 50.0 57.7 58.1 9.5 0.0 0.345488 31912 33339 1561-1595 1.000000 79.7 psbD-trnTGGU_p3 psbD-trnTGGU 3 TAGACCGGACCAACCTACAA GTGGTAGAGTAACGCCATGG 20 20 50.0 55.0 57.7 58.1 9.5 7.6 0.371563 31912 33339 1560-1594 1.000000 79.5 psbD-trnTGGU_p4 psbD-trnTGGU 4 TAGACCGGACCAACCTACAA TCAGTGGTAGAGTAACGCCA 20 20 50.0 50.0 57.7 58.1 9.5 0.0 0.393718 31912 33339 1563-1597 1.000000 79.3 psbD-trnTGGU_p5 psbD-trnTGGU 5 GAGCAATAGACCGGACCAAC GTGGTAGAGTAACGCCATGG 20 20 55.0 55.0 58.3 58.1 9.5 7.6 0.410916 31912 33339 1566-1600 1.000000 79.2 trnYGUA-trnDGUC_p1 trnYGUA-trnDGUC 1 TGGCAATATGTCTACGCTGG CGGTGCTCTGACCAATTGAA 20 20 50.0 50.0 57.8 58.5 0.0 7.1 0.716274 33859 34344 547-573 1.000000 76.2 trnYGUA-trnDGUC_p2 trnYGUA-trnDGUC 2 GGCAATATGTCTACGCTGGT CGGTGCTCTGACCAATTGAA 20 20 50.0 50.0 57.8 58.5 0.0 7.1 0.717825 33859 34344 546-572 1.000000 76.1 trnYGUA-trnDGUC_p3 trnYGUA-trnDGUC 3 GGGGACGGACTGTAAATTCG CGGTGCTCTGACCAATTGAA 20 20 55.0 50.0 58.4 58.5 0.0 7.1 0.828828 33859 34344 568-594 1.000000 75.2 trnYGUA-trnDGUC_p4 trnYGUA-trnDGUC 4 GGGACGGACTGTAAATTCGT CGGTGCTCTGACCAATTGAA 20 20 50.0 50.0 57.6 58.5 0.0 7.1 0.852505 33859 34344 567-593 1.000000 75.0 trnYGUA-trnDGUC_p5 trnYGUA-trnDGUC 5 GATTCTTCCTGGGTCGATGC CGGTGCTCTGACCAATTGAA 20 20 55.0 50.0 58.4 58.5 0.0 7.1 0.889785 33859 34344 601-627 1.000000 74.6 atpF_p1 atpF 1 TCAAAAAGAAATAGGAATAGCAA TTCGTCGGCTCTAATGGTTG 23 20 26.1 50.0 52.3 58.0 0.0 0.0 8.663991 52721 54038 1488-1501 1.000000 40.9 atpF_p2 atpF 2 TTCAAAAAGAAATAGGAATAGCA TTCGTCGGCTCTAATGGTTG 23 20 26.1 50.0 52.3 58.0 0.0 0.0 8.663991 52721 54038 1489-1502 1.000000 40.9 atpF_p3 atpF 3 TCAAAAAGAAATAGGAATAGCAA GGCTCTAATGGTTGCCATGA 23 20 26.1 50.0 52.3 57.9 0.0 1.0 8.716545 52721 54038 1482-1495 1.000000 40.9 atpF_p4 atpF 4 TTCAAAAAGAAATAGGAATAGCA GGCTCTAATGGTTGCCATGA 23 20 26.1 50.0 52.3 57.9 0.0 1.0 8.716545 52721 54038 1483-1496 1.000000 40.9 atpF_p5 atpF 5 AGAAAAAGTGTTTAAGTGATACA TTCGTCGGCTCTAATGGTTG 23 20 26.1 50.0 52.3 58.0 0.0 0.0 8.743005 52721 54038 1460-1473 1.000000 40.9 psbI-psbK_p1 psbI-psbK 1 GGATTACGTCCTGGATCGTT GTTTGGCAAGCTGCTGTAAG 20 20 50.0 50.0 57.1 57.9 22.6 1.4 0.940988 58162 58547 491-512 1.000000 76.9 psbI-psbK_p2 psbI-psbK 2 GGATTACGTCCTGGATCGTT CCAAATTACCCGAGGCCTAC 20 20 50.0 55.0 57.1 58.0 22.6 4.4 0.921721 58162 58547 577-598 1.000000 76.8 psbI-psbK_p3 psbI-psbK 3 GGATTACGTCCTGGATCGTT TTAGCCAAATTACCCGAGGC 20 20 50.0 50.0 57.1 58.0 22.6 0.0 0.931895 58162 58547 581-602 1.000000 76.7 psbI-psbK_p4 psbI-psbK 4 TCTTCACGTCCAGGATTACG CCAAATTACCCGAGGCCTAC 20 20 50.0 55.0 57.1 58.0 0.0 4.4 0.970323 58162 58547 589-610 1.000000 76.4 psbI-psbK_p5 psbI-psbK 5 TCTTCACGTCCAGGATTACG TTAGCCAAATTACCCGAGGC 20 20 50.0 50.0 57.1 58.0 0.0 0.0 0.980497 58162 58547 593-614 1.000000 76.3 trnQUUG-accD_p1 trnQUUG-accD 1 GAAATTGAAATGGGGCGTGG CTTCCGCTTCCTCGTTAGAC 20 20 50.0 55.0 58.0 58.1 0.0 0.0 0.098064 59153 61736 2323-2867 0.846154 85.1 trnQUUG-accD_p2 trnQUUG-accD 2 CCGTCGATATTTGCACTGGA CTTCCGCTTCCTCGTTAGAC 20 20 50.0 55.0 58.1 58.1 0.0 0.0 0.154724 59153 61736 2390-2934 0.846154 84.6 trnQUUG-accD_p3 trnQUUG-accD 3 TCCGTCGATATTTGCACTGG CTTCCGCTTCCTCGTTAGAC 20 20 50.0 55.0 58.1 58.1 0.0 0.0 0.154724 59153 61736 2391-2935 0.846154 84.6 trnQUUG-accD_p4 trnQUUG-accD 4 GAGGTTCGAATCCTTCCGTC CTTCCGCTTCCTCGTTAGAC 20 20 55.0 55.0 58.1 58.1 16.9 0.0 0.165413 59153 61736 2265-2809 0.846154 84.5 trnQUUG-accD_p5 trnQUUG-accD 5 GAAATTGAAATGGGGCGTGG TCTTCCGCTTCCTCGTTAGA 20 20 50.0 50.0 58.0 58.2 0.0 0.0 0.178473 59153 61736 2324-2868 0.846154 84.4 accD-psaI_p1 accD-psaI 1 CCACGCAATCCTTTAAAGGG CCATTGCAATTGCCGGAAAT 20 20 50.0 45.0 57.1 58.0 29.7 26.9 0.966463 63393 64009 740-770 1.000000 75.0 accD-psaI_p2 accD-psaI 2 CCACGCAATCCTTTAAAGGG AAGAAGCCATTGCAATTGCC 20 20 50.0 45.0 57.1 57.9 29.7 26.8 1.042997 63393 64009 746-776 1.000000 74.4 accD-psaI_p3 accD-psaI 3 CGATCAAATTGTACCACGCA CCATTGCAATTGCCGGAAAT 20 20 45.0 45.0 56.8 58.0 0.0 26.9 1.200011 63393 64009 753-783 1.000000 73.1 accD-psaI_p4 accD-psaI 4 CGATCAAATTGTACCACGCA AAGAAGCCATTGCAATTGCC 20 20 45.0 45.0 56.8 57.9 0.0 26.8 1.276545 63393 64009 759-789 1.000000 72.5 accD-psaI_p5 accD-psaI 5 TCGATCAAATTGTACCACGCA CCATTGCAATTGCCGGAAAT 21 20 42.9 45.0 58.3 58.0 0.0 26.9 1.337357 63393 64009 754-784 1.000000 72.0 ycf4-cemA_p1 ycf4-cemA 1 CCTTGACGCGTAGTGATGAT CCGAGTGCGTAGTATTCCAC 20 20 50.0 55.0 57.8 58.2 14.0 0.0 0.373455 65078 65949 1043-1059 1.000000 79.0 ycf4-cemA_p2 ycf4-cemA 2 CCTTGACGCGTAGTGATGAT CGAGTGCGTAGTATTCCACC 20 20 50.0 55.0 57.8 58.2 14.0 0.0 0.373455 65078 65949 1042-1058 1.000000 79.0 ycf4-cemA_p3 ycf4-cemA 3 CCTTGACGCGTAGTGATGAT TCCGAGTGCGTAGTATTCCA 20 20 50.0 50.0 57.8 58.2 14.0 0.0 0.455908 65078 65949 1044-1060 1.000000 78.3 ycf4-cemA_p4 ycf4-cemA 4 TATTTCTTGCGCGTACCCAT CCGAGTGCGTAGTATTCCAC 20 20 45.0 55.0 57.7 58.2 8.4 0.0 0.482753 65078 65949 978-994 1.000000 78.2 ycf4-cemA_p5 ycf4-cemA 5 TATTTCTTGCGCGTACCCAT CGAGTGCGTAGTATTCCACC 20 20 45.0 55.0 57.7 58.2 8.4 0.0 0.482753 65078 65949 977-993 1.000000 78.2 petA-psbJ_p1 petA-psbJ 1 ATCCATTACGTGTCCAAGGC AGCCGGTATTCTTGTGATCG 20 20 50.0 50.0 58.0 57.8 0.0 1.9 0.263455 67738 68770 1143-1272 1.000000 82.2 petA-psbJ_p2 petA-psbJ 2 ATCCATTACGTGTCCAAGGC TACTCCGGGTTAGGCTCATC 20 20 50.0 55.0 58.0 58.3 0.0 0.0 0.337432 67738 68770 1094-1223 1.000000 81.6 petA-psbJ_p3 petA-psbJ 3 GGCCTTTTGTTCTTCTTGGC AGCCGGTATTCTTGTGATCG 20 20 50.0 50.0 57.8 57.8 0.0 1.9 0.379922 67738 68770 1126-1255 1.000000 81.2 petA-psbJ_p4 petA-psbJ 4 CATTACGTGTCCAAGGCCTT AGCCGGTATTCTTGTGATCG 20 20 50.0 50.0 58.2 57.8 13.8 1.9 0.403852 67738 68770 1140-1269 1.000000 81.0 petA-psbJ_p5 petA-psbJ 5 ATCCATTACGTGTCCAAGGC ATACTCCGGGTTAGGCTCAT 20 20 50.0 50.0 58.0 57.6 0.0 0.0 0.438854 67738 68770 1095-1224 1.000000 80.8 trnICAU-ycf2_p1 trnICAU-ycf2 1 GTTGGGCGCTTTAACCATTC AACGCAGGACACTCCAAATT 20 20 50.0 45.0 58.0 58.0 7.6 0.0 0.027944 90744 91327 678-826 1.000000 86.1 trnICAU-ycf2_p2 trnICAU-ycf2 2 GTTGGGCGCTTTAACCATTC GCAGGAGCGAAACAATCAAC 20 20 50.0 50.0 58.0 58.0 7.6 0.0 0.040097 90744 91327 879-1027 1.000000 85.5 trnICAU-ycf2_p3 trnICAU-ycf2 3 GTTGGGCGCTTTAACCATTC AGGAAGATCCAGAAAGGCCT 20 20 50.0 50.0 58.0 58.0 7.6 0.0 0.030840 90744 91327 1197-1345 1.000000 85.2 trnICAU-ycf2_p4 trnICAU-ycf2 4 CACTTGACTGTCTACGGCTC AACGCAGGACACTCCAAATT 20 20 55.0 45.0 58.0 58.0 9.5 0.0 0.034771 90744 91327 1274-1422 1.000000 85.1 trnICAU-ycf2_p5 trnICAU-ycf2 5 CACTTGACTGTCTACGGCTC AGGAAGATCCAGAAAGGCCT 20 20 55.0 50.0 58.0 58.0 9.5 0.0 0.037666 90744 91327 1793-1941 1.000000 84.7 rrn16-trnIGAU_p1 rrn16-trnIGAU 1 CAAGGTAGCCGTACTGGAAG CTATCCATGTGGCTGAGAGC 20 20 55.0 55.0 57.7 57.8 7.8 0.0 0.462074 107472 108371 543-1045 1.000000 84.4 rrn16-trnIGAU_p2 rrn16-trnIGAU 2 CAAGGTAGCCGTACTGGAAG CGCTGATGAGCACATTGAAC 20 20 55.0 50.0 57.7 57.8 7.8 4.7 0.464916 107472 108371 562-1064 1.000000 84.3 rrn16-trnIGAU_p3 rrn16-trnIGAU 3 CAAGGTAGCCGTACTGGAAG GGCACAACGACGCAATTATC 20 20 55.0 50.0 57.7 58.2 7.8 0.0 0.485056 107472 108371 511-1013 1.000000 84.3 rrn16-trnIGAU_p4 rrn16-trnIGAU 4 AAGTCGTAACAAGGTAGCCG CTATCCATGTGGCTGAGAGC 20 20 50.0 55.0 57.6 57.8 0.0 0.0 0.525760 107472 108371 552-1054 1.000000 83.8 rrn16-trnIGAU_p5 rrn16-trnIGAU 5 AAGTCGTAACAAGGTAGCCG CGCTGATGAGCACATTGAAC 20 20 50.0 50.0 57.6 57.8 0.0 4.7 0.528602 107472 108371 571-1073 1.000000 83.7 ndhF-rpl32_p1 ndhF-rpl32 1 ACTGGTAGTGGAATGAAAGGT TTTGATATAGAAGTGCGTTTTT 21 22 42.9 27.3 56.5 52.4 0.0 0.0 10.020343 117403 118282 937-1000 1.000000 45.3 ndhF-rpl32_p2 ndhF-rpl32 2 ACTGGTAGTGGAATGAAAGGT TTTTGATATAGAAGTGCGTTTT 21 22 42.9 27.3 56.5 52.4 0.0 0.0 10.020343 117403 118282 938-1001 1.000000 45.3 ndhF-rpl32_p3 ndhF-rpl32 3 ACTGGTAGTGGAATGAAAGGT TTTTTGATATAGAAGTGCGTTT 21 22 42.9 27.3 56.5 52.4 0.0 0.0 10.020343 117403 118282 939-1002 1.000000 45.3 ndhF-rpl32_p4 ndhF-rpl32 4 ACTGGTAGTGGAATGAAAGGT TCCAAATAGTTTTACGAATACG 21 22 42.9 31.8 56.5 52.4 0.0 0.0 10.038344 117403 118282 963-1026 1.000000 45.3 ndhF-rpl32_p5 ndhF-rpl32 5 AGGAACTGGTAGTGGAATGA TTTGATATAGAAGTGCGTTTTT 20 22 45.0 27.3 55.5 52.4 0.0 0.0 10.117756 117403 118282 941-1004 1.000000 45.3 ycf1-ndhF_p1 ycf1-ndhF 1 AGTGAGCAATGGGAAAGCAA TACCATAGTAGCGGCATGGA 20 20 45.0 50.0 58.0 58.0 0.0 20.2 0.004289 136033 136289 1325-1524 1.000000 85.6 ycf1-ndhF_p2 ycf1-ndhF 2 TCCGCATTGACTTAGTGAGC TACCATAGTAGCGGCATGGA 20 20 50.0 50.0 58.0 58.0 0.0 20.2 0.014082 136033 136289 1338-1537 1.000000 85.5 ycf1-ndhF_p3 ycf1-ndhF 3 AGTGAGCAATGGGAAAGCAA GGCATGGATAAGAGCGGAAA 20 20 45.0 50.0 58.0 58.0 0.0 0.0 0.033033 136033 136289 1313-1512 1.000000 85.4 ycf1-ndhF_p4 ycf1-ndhF 4 TCCAGCCCATTTCAGGACTA TACCATAGTAGCGGCATGGA 20 20 50.0 50.0 58.0 58.0 0.0 20.2 0.038523 136033 136289 1529-1728 1.000000 85.2 ycf1-ndhF_p5 ycf1-ndhF 5 TGCCGATTCAACCTGTTTCA TACCATAGTAGCGGCATGGA 20 20 45.0 50.0 58.0 58.0 0.0 20.2 0.029672 136033 136289 1694-1893 1.000000 84.9 trnIGAU-rrn16_p1 trnIGAU-rrn16 1 CTATCCATGTGGCTGAGAGC CAAGGTAGCCGTACTGGAAG 20 20 55.0 55.0 57.8 57.7 0.0 7.8 0.462074 145204 146103 543-1045 1.000000 84.4 trnIGAU-rrn16_p2 trnIGAU-rrn16 2 GGCACAACGACGCAATTATC CAAGGTAGCCGTACTGGAAG 20 20 50.0 55.0 58.2 57.7 0.0 7.8 0.485056 145204 146103 511-1013 1.000000 84.4 trnIGAU-rrn16_p3 trnIGAU-rrn16 3 CGCTGATGAGCACATTGAAC CAAGGTAGCCGTACTGGAAG 20 20 50.0 55.0 57.8 57.7 4.7 7.8 0.464916 145204 146103 562-1064 1.000000 84.3 trnIGAU-rrn16_p4 trnIGAU-rrn16 4 CTATCCATGTGGCTGAGAGC AAGTCGTAACAAGGTAGCCG 20 20 55.0 50.0 57.8 57.6 0.0 0.0 0.525760 145204 146103 552-1054 1.000000 83.9 trnIGAU-rrn16_p5 trnIGAU-rrn16 5 CGCTGATGAGCACATTGAAC AAGTCGTAACAAGGTAGCCG 20 20 50.0 50.0 57.8 57.6 4.7 0.0 0.528602 145204 146103 571-1073 1.000000 83.8 ycf2_p1 ycf2 1 GCAGGAGCGAAACAATCAAC GTTGGGCGCTTTAACCATTC 20 20 50.0 50.0 58.0 58.0 0.0 7.6 0.040097 162040 162159 879-1027 1.000000 85.5 ycf2_p2 ycf2 2 CCCTCCTTTTTCCGATCCAG GTTGGGCGCTTTAACCATTC 20 20 55.0 50.0 58.0 58.0 0.0 7.6 0.053324 162040 162159 987-1135 1.000000 85.3 ycf2_p3 ycf2 3 AGGAAGATCCAGAAAGGCCT GTTGGGCGCTTTAACCATTC 20 20 50.0 50.0 58.0 58.0 0.0 7.6 0.030840 162040 162159 1197-1345 1.000000 85.2 ycf2_p4 ycf2 4 GAATAGCCGGGACTTTGAGG GTTGGGCGCTTTAACCATTC 20 20 55.0 50.0 58.0 58.0 2.2 7.6 0.054274 162040 162159 1214-1362 1.000000 85.0 ycf2_p5 ycf2 5 CCACAGTGGACCTCTCAGTA GTTGGGCGCTTTAACCATTC 20 20 55.0 50.0 58.1 58.0 15.3 7.6 0.084470 162040 162159 1365-1513 1.000000 84.6 ycf2-trnICAU_p1 ycf2-trnICAU 1 AACGCAGGACACTCCAAATT GTTGGGCGCTTTAACCATTC 20 20 45.0 50.0 58.0 58.0 0.0 7.6 0.027944 162248 162831 678-826 1.000000 86.1 ycf2-trnICAU_p2 ycf2-trnICAU 2 GCAGGAGCGAAACAATCAAC GTTGGGCGCTTTAACCATTC 20 20 50.0 50.0 58.0 58.0 0.0 7.6 0.040097 162248 162831 879-1027 1.000000 85.5 ycf2-trnICAU_p3 ycf2-trnICAU 3 AGGAAGATCCAGAAAGGCCT GTTGGGCGCTTTAACCATTC 20 20 50.0 50.0 58.0 58.0 0.0 7.6 0.030840 162248 162831 1197-1345 1.000000 85.2 ycf2-trnICAU_p4 ycf2-trnICAU 4 AACGCAGGACACTCCAAATT CACTTGACTGTCTACGGCTC 20 20 45.0 55.0 58.0 58.0 0.0 9.5 0.034771 162248 162831 1274-1422 1.000000 85.1 ycf2-trnICAU_p5 ycf2-trnICAU 5 AGGAAGATCCAGAAAGGCCT CACTTGACTGTCTACGGCTC 20 20 50.0 55.0 58.0 58.0 0.0 9.5 0.037666 162248 162831 1793-1941 1.000000 84.7