feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score ccsA_part1 gene ccsA ccsA 1 993 -1 993 LSC 0.169856 275 86 10 2 yes 1.000000 4 1.000000 0.170676 0.973817 83.900000 IGS_001 igs ccsA|psbZ ccsA-psbZ 994 1209 0 216 LSC 0.210317 71 78 5 5 no 1.000000 4 1.000000 0.274424 0.708333 70.200000 psbZ gene psbZ psbZ 1210 1398 -1 189 LSC 0.056437 17 0 6 17 no 1.000000 4 1.000000 0.056437 1.000000 71.700000 IGS_002 igs psbZ|psbK psbZ-psbK 1399 1695 0 297 LSC 0.164983 77 48 8 15 no 1.000000 4 1.000000 0.172550 0.939394 76.900000 psbK gene psbK psbK 1696 1836 -1 141 LSC 0.050827 12 0 1 1 no 1.000000 4 1.000000 0.050827 1.000000 70.700000 IGS_003 igs psbK|orf1252 psbK-orf1252 1837 2144 0 308 LSC 0.199783 93 80 26 3 no 1.000000 4 1.000000 0.217513 0.860390 74.300000 orf1252 gene orf1252 orf1252 2145 5903 -1 3759 LSC 0.204398 1234 169 1 2 no 1.000000 4 1.000000 0.209830 0.965948 79.100000 IGS_004 igs orf1252|ftsH orf1252-ftsH 5904 6088 0 185 LSC 0.172973 52 33 5 3 no 1.000000 4 1.000000 0.198877 0.854054 74.700000 ftsH gene ftsH ftsH 6089 17029 -1 10941 LSC 0.164976 2906 536 0 2 no 1.000000 4 1.000000 0.168179 0.970387 77.600000 IGS_005 igs ftsH|trnL(uaa) ftsH-trnL(uaa) 17030 17249 0 220 LSC 0.210606 63 114 0 26 no 1.000000 4 1.000000 0.240060 0.595455 67.400000 trnL(uaa)_part2 tRNA trnL(uaa) trnL(uaa) 17250 17298 -1 49 LSC 0.013605 1 0 4 7 no 0.000000 2 0.000000 0.013605 1.000000 27.700000 trnL(uaa)_part1 tRNA trnL(uaa) trnL(uaa) 17675 17709 -1 35 LSC 0.019048 1 0 1 1 no 0.000000 2 0.000000 0.019048 1.000000 31.000000 IGS_008 igs trnL(uaa)|trnF(gaa) trnL(uaa)-trnF(gaa) 17710 17910 0 201 LSC 0.197347 63 6 27 72 no 1.000000 4 1.000000 0.200224 0.980100 77.700000 trnF(gaa) tRNA trnF(gaa) trnF(gaa) 17911 17982 1 72 LSC 0.000000 0 0 5 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_009 igs trnF(gaa)|psbC trnF(gaa)-psbC 17983 18395 0 413 LSC 0.216126 135 109 77 32 no 1.000000 4 1.000000 0.214991 0.944310 80.100000 psbC gene psbC psbC 18396 21736 1 3341 LSC 0.059964 271 1955 30 2 no 1.000000 4 1.000000 0.060310 0.554924 67.300000 IGS_010 igs psbC|trnR(acg) psbC-trnR(acg) 21737 21972 0 236 LSC 0.249269 89 92 12 77 no 1.000000 4 1.000000 0.312377 0.737288 71.000000 trnR(acg) tRNA trnR(acg) trnR(acg) 21973 22048 -1 76 LSC 0.000000 0 0 2 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_011 igs trnR(acg)|ycf12 trnR(acg)-ycf12 22049 22533 0 485 LSC 0.260481 192 119 78 9 no 1.000000 4 1.000000 0.281730 0.876289 78.900000 ycf12 gene ycf12 ycf12 22534 22635 1 102 LSC 0.073529 12 0 7 0 no 1.000000 4 1.000000 0.073529 1.000000 72.500000 IGS_012 igs ycf12|trnD(guc) ycf12-trnD(guc) 22636 22853 0 218 LSC 0.181957 64 83 12 76 no 1.000000 4 1.000000 0.229751 0.756881 71.700000 trnD(guc) tRNA trnD(guc) trnD(guc) 22854 22927 1 74 LSC 0.000000 0 0 2 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_013 igs trnD(guc)|chlN trnD(guc)-chlN 22928 23184 0 257 LSC 0.291829 119 53 76 12 no 1.000000 4 1.000000 0.297852 0.957198 77.200000 chlN gene chlN chlN 23185 24504 1 1320 LSC 0.092803 202 0 1 0 no 1.000000 4 1.000000 0.092803 1.000000 78.800000 IGS_014 igs chlN|psaM chlN-psaM 24505 24812 0 308 LSC 0.227814 108 72 3 5 no 1.000000 4 1.000000 0.247719 0.892857 75.100000 psaM gene psaM psaM 24813 24911 1 99 LSC 0.033670 5 0 4 1 no 0.000000 2 0.000000 0.033670 1.000000 40.300000 IGS_015 igs psaM|chlB psaM-chlB 24912 25309 0 398 LSC 0.244975 138 212 14 23 no 1.000000 4 1.000000 0.282247 0.683417 71.600000 chlB gene chlB chlB 25310 26857 1 1548 LSC 0.083226 216 6 15 1 no 1.000000 4 1.000000 0.083537 0.995478 79.100000 IGS_016 igs chlB|chlL chlB-chlL 26858 27104 0 247 LSC 0.300270 115 47 5 12 no 1.000000 4 1.000000 0.314448 0.955466 76.700000 chlL gene chlL chlL 27105 27971 1 867 LSC 0.082276 111 0 3 0 no 1.000000 4 1.000000 0.082276 1.000000 78.800000 IGS_017 igs chlL|trnL(uag) chlL-trnL(uag) 27972 28123 0 152 LSC 0.188596 45 23 20 52 no 1.000000 4 1.000000 0.186647 0.993421 78.900000 trnL(uag) tRNA trnL(uag) trnL(uag) 28124 28205 1 82 LSC 0.016260 2 0 0 3 no 1.000000 4 1.000000 0.016260 1.000000 47.900000 IGS_018 igs trnL(uag)|atpA trnL(uag)-atpA 28206 28679 0 474 LSC 0.239958 179 118 4 9 no 1.000000 4 1.000000 0.283020 0.835443 77.400000 atpA gene atpA atpA 28680 31493 1 2814 LSC 0.083571 364 1305 3 3 no 1.000000 4 1.000000 0.079041 0.984009 78.500000 orf274 gene orf274 orf274 29597 30421 1 825 LSC 0.103030 127 825 26 34 no 1.000000 4 1.000000 0.103030 1.000000 80.700000 IGS_020 igs orf274|atpI orf274-atpI 30422 31806 0 1385 LSC 0.086768 192 140 17 11 yes 1.000000 4 1.000000 0.088627 0.959567 84.200000 atpI gene atpI atpI 31807 32565 1 759 LSC 0.069609 85 0 12 1 no 1.000000 4 1.000000 0.069609 1.000000 78.800000 IGS_021 igs atpI|petG atpI-petG 32566 32936 0 371 LSC 0.167118 93 171 17 104 no 1.000000 4 1.000000 0.220202 0.644205 70.800000 petG gene petG petG 32937 33050 1 114 LSC 0.004386 1 0 14 2 no 0.250000 2 0.500000 0.004386 1.000000 26.700000 IGS_022 igs petG|trnY(gua) petG-trnY(gua) 33051 33182 0 132 LSC 0.238636 51 24 9 85 no 1.000000 4 1.000000 0.242585 0.946970 77.000000 trnY(gua) tRNA trnY(gua) trnY(gua) 33183 33264 1 82 LSC 0.000000 0 0 1 3 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_023 igs trnY(gua)|trnK(uuu) trnY(gua)-trnK(uuu) 33265 33588 0 324 LSC 0.281379 141 64 83 57 no 1.000000 4 1.000000 0.312645 0.845679 78.900000 trnK(uuu) tRNA trnK(uuu) trnK(uuu) 33589 33660 1 72 LSC 0.006944 1 0 5 8 no 0.250000 2 0.500000 0.006944 1.000000 28.700000 IGS_024 igs trnK(uuu)|trnI(cau) trnK(uuu)-trnI(cau) 33661 34092 0 432 LSC 0.098648 54 371 14 44 no 1.000000 4 1.000000 0.312478 0.155093 65.700000 trnI(cau) tRNA trnI(cau) trnI(cau) 34093 34165 1 73 LSC 0.009132 1 0 1 1 no 0.000000 2 0.000000 0.009132 1.000000 24.600000 IGS_025 igs trnI(cau)|rpl2 trnI(cau)-rpl2 34166 34613 0 448 LSC 0.331448 214 200 28 11 no 1.000000 4 1.000000 0.381448 0.761161 74.200000 rpl2 gene rpl2 rpl2 34614 35444 -1 831 LSC 0.082230 113 0 3 2 no 1.000000 4 1.000000 0.082230 1.000000 78.900000 IGS_026 igs rpl2|rpl23 rpl2-rpl23 35445 35677 0 233 LSC 0.181753 65 62 23 4 no 1.000000 4 1.000000 0.226868 0.798283 72.800000 rpl23 gene rpl23 rpl23 35678 36085 -1 408 LSC 0.084150 55 0 0 2 no 1.000000 4 1.000000 0.084150 1.000000 74.800000 IGS_027 igs rpl23|trnS(uga) rpl23-trnS(uga) 36086 36544 0 459 LSC 0.189528 134 130 3 51 no 1.000000 4 1.000000 0.232558 0.758170 75.000000 trnS(uga) tRNA trnS(uga) trnS(uga) 36545 36631 1 87 LSC 0.007663 1 0 4 5 no 0.000000 2 0.000000 0.007663 1.000000 23.900000 IGS_028 igs trnS(uga)|trnC(gca) trnS(uga)-trnC(gca) 36632 36658 0 27 LSC 0.271605 11 4 35 45 no 0.500000 3 0.666667 0.268384 1.000000 70.800000 trnC(gca) tRNA trnC(gca) trnC(gca) 36659 36730 1 72 LSC 0.009259 1 1 0 2 no 0.500000 3 0.666667 0.004630 1.000000 35.700000 IGS_029 igs trnC(gca)|atpH trnC(gca)-atpH 36731 36824 0 94 LSC 0.125887 18 1 26 18 no 1.000000 4 1.000000 0.122931 1.000000 75.100000 atpH gene atpH atpH 36825 37076 1 252 LSC 0.039683 16 0 26 1 no 0.500000 3 0.666667 0.039683 1.000000 54.000000 IGS_030 igs atpH|atpF atpH-atpF 37077 37574 0 498 LSC 0.218876 163 124 4 5 no 1.000000 4 1.000000 0.244603 0.783133 76.800000 atpF gene atpF atpF 37575 38108 1 534 LSC 0.058989 53 0 19 2 no 1.000000 4 1.000000 0.058989 1.000000 77.400000 IGS_031 igs atpF|rpl16 atpF-rpl16 38109 38776 0 668 LSC 0.201952 200 223 5 8 no 1.000000 4 1.000000 0.243327 0.754491 77.800000 rpl16 gene rpl16 rpl16 38777 39220 1 444 LSC 0.060435 43 0 10 3 no 1.000000 4 1.000000 0.060435 1.000000 75.300000 IGS_032 igs rpl16|rpl14 rpl16-rpl14 39221 39392 0 172 LSC 0.207364 56 6 12 32 no 1.000000 4 1.000000 0.214048 0.970930 76.900000 rpl14 gene rpl14 rpl14 39393 39758 1 366 LSC 0.070128 41 0 2 1 no 1.000000 4 1.000000 0.070128 1.000000 73.900000 IGS_033 igs rpl14|psbD rpl14-psbD 39759 40270 0 512 LSC 0.259369 197 239 6 44 no 1.000000 4 1.000000 0.258689 0.986328 79.600000 psbD gene psbD psbD 40271 41350 1 1080 LSC 0.042593 75 0 31 0 no 1.000000 4 1.000000 0.042593 1.000000 71.600000 IGS_034 igs psbD|rpoB psbD-rpoB 41351 41701 0 351 LSC 0.231429 126 165 9 18 no 1.000000 4 1.000000 0.303310 0.774929 72.200000 rpoB gene rpoB rpoB 41702 43921 -1 2220 LSC 0.140390 509 3 2 1 no 1.000000 4 1.000000 0.140346 1.000000 77.500000 IGS_035 igs rpoB|tufA rpoB-tufA 43922 44566 0 645 LSC 0.186508 168 292 3 6 no 1.000000 4 1.000000 0.266087 0.615504 74.200000 tufA gene tufA tufA 44567 45823 -1 1257 LSC 0.077963 164 4 5 1 no 1.000000 4 1.000000 0.078208 0.996818 79.100000 IGS_036 igs tufA|trnG(ucc) tufA-trnG(ucc) 45824 46171 0 348 LSC 0.176329 94 120 14 78 no 1.000000 4 1.000000 0.231255 0.698276 71.900000 trnG(ucc) tRNA trnG(ucc) trnG(ucc) 46172 46244 -1 73 LSC 0.000000 0 0 2 5 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_037 igs trnG(ucc)|trnMe(cau) trnG(ucc)-trnMe(cau) 46245 46390 0 146 LSC 0.146119 34 18 75 79 yes 1.000000 4 1.000000 0.137158 0.958904 82.600000 trnMe(cau) tRNA trnMe(cau) trnMe(cau) 46391 46464 1 74 LSC 0.000000 0 0 19 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_038 igs trnMe(cau)|ycf1 trnMe(cau)-ycf1 46465 46572 0 108 LSC 0.254630 44 13 93 3 no 1.000000 4 1.000000 0.271714 0.962963 77.300000 ycf1 gene ycf1 ycf1 46573 56940 -1 10368 LSC 0.138889 2344 559 7 12 no 1.000000 4 1.000000 0.142402 0.964699 78.100000 IGS_039 igs ycf1|ycf4 ycf1-ycf4 56941 57463 0 523 LSC 0.213193 173 49 10 5 yes 1.000000 4 1.000000 0.215167 0.984704 82.700000 ycf4 gene ycf4 ycf4 57464 58036 -1 573 LSC 0.080570 77 0 1 15 no 1.000000 4 1.000000 0.080570 1.000000 78.300000 IGS_040 igs ycf4|psbJ ycf4-psbJ 58037 58638 0 602 LSC 0.157454 147 174 29 6 no 1.000000 4 1.000000 0.188626 0.774086 78.500000 psbJ gene psbJ psbJ 58639 58767 -1 129 LSC 0.033592 8 0 1 1 no 1.000000 4 1.000000 0.033592 1.000000 60.400000 IGS_041 igs psbJ|psbL psbJ-psbL 58768 59082 0 315 LSC 0.194268 99 45 35 9 no 1.000000 4 1.000000 0.207563 0.914286 76.900000 psbL gene psbL psbL 59083 59265 -1 183 LSC 0.052823 16 0 7 16 no 1.000000 4 1.000000 0.052823 1.000000 71.500000 IGS_042 igs psbL|psbF psbL-psbF 59266 59596 0 331 LSC 0.135952 68 99 38 30 no 1.000000 4 1.000000 0.152773 0.815710 75.600000 psbF gene psbF psbF 59597 59746 -1 150 LSC 0.026667 6 1 5 1 no 0.500000 3 0.666667 0.026771 1.000000 46.000000 IGS_043 igs psbF|psbI psbF-psbI 59747 60093 0 347 LSC 0.168129 93 71 2 21 no 1.000000 4 1.000000 0.198811 0.812680 74.400000 psbI gene psbI psbI 60094 62608 -1 2515 LSC 0.178926 711 197 14 10 yes 1.000000 4 1.000000 0.186559 0.939960 81.800000 orf458 gene orf458 orf458 60573 61949 -1 1377 LSC 0.209998 459 77 2 21 yes 1.000000 4 1.000000 0.219449 0.947712 83.700000 IGS_045 igs orf458|rps12 orf458-rps12 61950 62873 0 924 LSC 0.135642 200 89 5 9 yes 1.000000 4 1.000000 0.138269 0.942641 83.500000 rps12 gene rps12 rps12 62874 63263 -1 390 LSC 0.076068 49 8 0 3 no 1.000000 4 1.000000 0.077608 0.979487 76.400000 IGS_046 igs rps12|psaJ rps12-psaJ 63264 63701 0 438 LSC 0.305936 208 47 11 24 no 1.000000 4 1.000000 0.308253 0.977169 81.100000 psaJ gene psaJ psaJ 63702 63827 -1 126 LSC 0.078042 17 0 1 1 no 1.000000 4 1.000000 0.078042 1.000000 72.600000 IGS_047 igs psaJ|trnMf(cau) psaJ-trnMf(cau) 63828 63967 0 140 LSC 0.173810 38 36 8 22 no 1.000000 4 1.000000 0.184517 0.814286 73.600000 trnMf(cau) tRNA trnMf(cau) trnMf(cau) 63968 64041 -1 74 LSC 0.013514 2 0 3 6 no 0.250000 2 0.500000 0.013514 1.000000 33.100000 IGS_048 igs trnMf(cau)|psbM trnMf(cau)-psbM 64042 64447 0 406 LSC 0.320576 205 44 50 4 no 1.000000 4 1.000000 0.335505 0.953202 79.400000 psbM gene psbM psbM 64448 64552 -1 105 LSC 0.028571 5 0 0 3 no 0.500000 3 0.666667 0.028571 1.000000 46.900000 IGS_049 igs psbM|rps3 psbM-rps3 64553 64698 0 146 LSC 0.157534 37 14 77 9 no 1.000000 4 1.000000 0.165942 0.945205 77.600000 rps3 gene rps3 rps3 64699 66489 -1 1791 LSC 0.126373 366 30 3 1 no 1.000000 4 1.000000 0.126287 0.986600 79.900000 IGS_050 igs rps3|atpE rps3-atpE 66490 67090 0 601 LSC 0.250720 222 204 23 0 no 1.000000 4 1.000000 0.307483 0.747088 77.000000 atpE gene atpE atpE 67091 67573 -1 483 LSC 0.088337 68 2 2 1 no 1.000000 4 1.000000 0.087845 1.000000 76.900000 IGS_051 igs atpE|rps7 atpE-rps7 67574 67611 0 38 LSC 0.311404 20 5 2 1 no 1.000000 4 1.000000 0.342282 0.947368 76.700000 rps7 gene rps7 rps7 67612 68184 -1 573 LSC 0.113147 107 1 2 6 no 1.000000 4 1.000000 0.113257 1.000000 78.500000 IGS_052 igs rps7|trnP(ugg) rps7-trnP(ugg) 68185 68321 0 137 LSC 0.335766 72 21 12 77 no 1.000000 4 1.000000 0.318697 1.000000 78.500000 trnP(ugg) tRNA trnP(ugg) trnP(ugg) 68322 68395 -1 74 LSC 0.000000 0 0 3 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_053 igs trnP(ugg)|rps19 trnP(ugg)-rps19 68396 68654 0 259 LSC 0.148579 59 161 77 36 no 1.000000 4 1.000000 0.197758 0.656371 70.900000 rps19 gene rps19 rps19 68655 68933 -1 279 LSC 0.063919 30 0 0 5 no 1.000000 4 1.000000 0.063919 1.000000 72.500000 IGS_054 igs rps19|rps18 rps19-rps18 68934 69787 0 854 LSC 0.273611 356 210 6 5 no 1.000000 4 1.000000 0.302992 0.857143 80.400000 rps18 gene rps18 rps18 69788 70285 1 498 LSC 0.094378 79 6 6 0 no 1.000000 4 1.000000 0.095500 0.987952 77.800000 IGS_055 igs rps18|rps9 rps18-rps9 70286 70559 0 274 LSC 0.261278 105 61 3 4 no 1.000000 4 1.000000 0.251642 0.912409 75.300000 rps9 gene rps9 rps9 70560 70985 1 426 LSC 0.088028 62 2 3 8 no 1.000000 4 1.000000 0.088353 0.997653 75.900000 IGS_056 igs rps9|rpoC1 rps9-rpoC1 70986 71368 0 383 LSC 0.129581 78 158 12 14 no 1.000000 4 1.000000 0.193521 0.603133 70.200000 rpoC1 gene rpoC1 rpoC1 71369 77212 1 5844 LSC 0.184976 1728 205 4 0 no 1.000000 4 1.000000 0.187711 0.970226 76.000000 IGS_057 igs rpoC1|rpoB rpoC1-rpoB 77213 77651 0 439 LSC 0.234244 158 175 6 8 no 1.000000 4 1.000000 0.321788 0.683371 72.600000 rpoB gene rpoB rpoB 77652 79670 1 2019 LSC 0.119861 385 16 8 2 no 1.000000 4 1.000000 0.120116 0.992075 78.600000 IGS_058 igs rpoB|trnV(uac) rpoB-trnV(uac) 79671 79762 0 92 LSC 0.242754 36 1 3 73 no 1.000000 4 1.000000 0.236204 0.989130 73.800000 trnV(uac) tRNA trnV(uac) trnV(uac) 79763 79835 1 73 LSC 0.000000 0 0 2 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_059 igs trnV(uac)|trnR(ucu) trnV(uac)-trnR(ucu) 79836 79931 0 96 LSC 0.305556 48 19 75 4 no 1.000000 4 1.000000 0.305998 0.989583 77.300000 trnR(ucu) tRNA trnR(ucu) trnR(ucu) 79932 80005 1 74 LSC 0.031532 4 0 0 8 no 0.500000 3 0.666667 0.031532 1.000000 49.100000 IGS_060 igs trnR(ucu)|psbA trnR(ucu)-psbA 80006 80968 0 963 IRb 0.095565 140 192 9 81 no 1.000000 4 1.000000 0.109148 0.825545 80.400000 psbA gene psbA psbA 80969 86019 1 5051 IRb 0.076233 496 4016 16 39 no 1.000000 4 1.000000 0.046290 0.662839 69.300000 orf393 gene orf393 orf393 81657 82838 1 1182 IRb 0.067964 120 1182 0 1 no 1.000000 4 1.000000 0.134683 0.494078 72.400000 IGS_062 igs orf393|orf247 orf393-orf247 82839 84905 0 2067 IRb 0.082756 220 1694 5 8 no 1.000000 4 1.000000 0.048422 0.834059 75.900000 orf247 gene orf247 orf247 84906 85649 1 744 IRb 0.127823 96 744 22 0 no 1.000000 4 1.000000 NA 0.022849 66.500000 IGS_063 igs orf247|orf212 orf247-orf212 85650 87458 0 1809 IRb 0.277480 326 1559 1 5 no 1.000000 4 1.000000 0.100318 0.264234 69.000000 orf212 gene orf212 orf212 87459 88100 1 642 IRb 0.481771 185 642 0 1 yes 0.500000 3 0.666667 NA 0.000000 56.900000 IGS_064 igs orf212|orf258 orf212-orf258 88101 92064 0 3964 IRb 0.441263 865 3929 7 1 no 1.000000 4 1.000000 0.397148 0.021695 62.000000 orf258 gene orf258 orf258 92065 92844 1 780 IRb 0.466440 215 752 0 0 no 1.000000 4 1.000000 0.395754 0.046154 66.800000 IGS_065 igs orf258|orf532 orf258-orf532 92845 98150 0 5306 IRb 0.459808 1764 4905 1 8 yes 1.000000 4 1.000000 0.473768 0.121937 61.600000 orf532 gene orf532 orf532 98151 99752 1 1602 IRb 0.443635 472 1479 2 1 yes 1.000000 4 1.000000 0.489095 0.130462 67.700000 IGS_066 igs orf532|rbcL orf532-rbcL 99753 102363 0 2611 IRb 0.342176 755 2189 4 6 no 1.000000 4 1.000000 0.414133 0.207583 66.800000 rbcL gene rbcL rbcL 102364 103791 -1 1428 IRb 0.020308 49 0 2 12 no 1.000000 4 1.000000 0.020308 1.000000 57.300000 IGS_067 igs rbcL|cemA rbcL-cemA 103792 104085 0 294 IRb 0.179705 79 39 41 30 no 1.000000 4 1.000000 0.190160 0.904762 78.000000 cemA gene cemA cemA 104086 104952 -1 867 IRb 0.023068 34 0 2 15 no 1.000000 4 1.000000 0.023068 1.000000 59.200000 IGS_068 igs cemA|rrf cemA-rrf 104953 105107 0 155 IRb 0.309677 68 39 35 5 no 1.000000 4 1.000000 0.279831 0.877419 74.700000 rrf rRNA rrf rrf 105108 105233 -1 126 IRb 0.018519 4 0 1 27 no 0.500000 3 0.666667 0.018519 1.000000 40.500000 IGS_069 igs rrf|rrl rrf-rrl 105234 105350 0 117 IRb 0.065527 11 53 69 43 no 1.000000 4 1.000000 0.091391 0.547009 69.300000 rrl_part3 rRNA rrl rrl 105351 105664 -1 314 IRb 0.007962 4 0 67 0 no 0.500000 3 0.666667 0.007962 1.000000 33.600000 orf225 gene orf225 orf225 106105 106719 -1 615 IRb 0.210840 189 615 0 19 no 1.000000 4 1.000000 0.309032 0.642276 74.300000 IGS_072 igs orf225|rrl orf225-rrl 106720 106941 0 222 IRb 0.243243 79 222 10 2 no 1.000000 4 1.000000 0.309745 0.756757 69.600000 rrl_part2 rRNA rrl rrl 106942 107037 -1 96 IRb 0.006944 1 3 5 300 no 0.500000 3 0.666667 0.003509 0.989583 36.400000 IGS_073 igs rrl|rrl rrl-rrl 107038 108093 0 1056 IRb NA 0 1056 93 94 no 0.250000 2 0.500000 NA 0.000000 24.200000 rrl_part1 rRNA rrl rrl 108094 110657 -1 2564 IRb 0.016641 67 5 300 9 no 1.000000 4 1.000000 0.016267 1.000000 53.200000 IGS_074 igs rrl|trnA(ugc) rrl-trnA(ugc) 110658 110890 0 233 IRb 0.092836 32 98 23 89 no 1.000000 4 1.000000 0.156191 0.583691 69.000000 trnA(ugc) tRNA trnA(ugc) trnA(ugc) 110891 110963 -1 73 IRb 0.000000 0 0 16 16 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_075 igs trnA(ugc)|trnI(gau) trnA(ugc)-trnI(gau) 110964 111232 0 269 IRb 0.225641 89 65 89 79 no 1.000000 4 1.000000 0.257356 0.817844 78.800000 trnI(gau) tRNA trnI(gau) trnI(gau) 111233 111306 -1 74 IRb 0.000000 0 0 11 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_076 igs trnI(gau)|rrs trnI(gau)-rrs 111307 111510 0 204 IRb 0.267157 84 75 85 259 no 1.000000 4 1.000000 0.320296 0.843137 79.100000 rrs_part2 rRNA rrs rrs 111511 112593 -1 1083 IRb 0.002924 5 2 3 28 no 0.500000 3 0.666667 0.002929 0.998153 36.700000 rrs_part1 rRNA rrs rrs 113032 113434 -1 403 IRb 0.011166 8 1 19 13 no 0.500000 3 0.666667 0.011194 0.997519 39.000000 IGS_079 igs rrs|rps14 rrs-rps14 113435 114404 0 970 IRb 0.126473 182 339 73 11 no 1.000000 4 1.000000 0.169990 0.670103 76.300000 rps14 gene rps14 rps14 114405 114707 1 303 IRb 0.033553 16 0 6 0 no 0.500000 3 0.666667 0.033553 1.000000 49.900000 IGS_080 igs rps14|trnL(caa) rps14-trnL(caa) 114708 114827 0 120 IRb 0.131653 24 64 18 27 no 1.000000 4 1.000000 0.244191 0.550000 68.200000 trnL(caa) tRNA trnL(caa) trnL(caa) 114828 114908 -1 81 IRb 0.047325 6 0 2 2 no 0.500000 3 0.666667 0.047325 1.000000 58.800000 IGS_081 igs trnL(caa)|psaA trnL(caa)-psaA 114909 115496 0 588 SSC 0.181507 170 104 46 44 yes 1.000000 4 1.000000 0.195393 0.931973 85.200000 psaA gene psaA psaA 115497 117752 1 2256 SSC 0.072695 277 0 11 0 no 1.000000 4 1.000000 0.072695 1.000000 77.200000 IGS_082 igs psaA|atpB psaA-atpB 117753 118449 0 697 SSC 0.123051 114 527 9 18 no 1.000000 4 1.000000 0.264734 0.276901 70.400000 atpB gene atpB atpB 118450 119898 -1 1449 SSC 0.063032 150 0 0 5 no 1.000000 4 1.000000 0.063032 1.000000 78.800000 IGS_083 igs atpB|trnQ(uug) atpB-trnQ(uug) 119899 120693 0 795 SSC 0.175327 214 322 3 15 no 1.000000 4 1.000000 0.249316 0.645283 74.800000 trnQ(uug) tRNA trnQ(uug) trnQ(uug) 120694 120765 1 72 SSC 0.030093 4 0 4 0 no 0.500000 3 0.666667 0.030093 1.000000 48.600000 IGS_084 igs trnQ(uug)|rpl32 trnQ(uug)-rpl32 120766 121061 0 296 SSC 0.231959 105 71 13 8 no 1.000000 4 1.000000 0.258168 0.817568 73.600000 rpl32 gene rpl32 rpl32 121062 121214 1 153 SSC 0.120915 29 0 2 0 no 1.000000 4 1.000000 0.120915 1.000000 72.500000 IGS_085 igs rpl32|trnT(ugu) rpl32-trnT(ugu) 121215 121364 0 150 SSC 0.364444 85 41 0 16 no 1.000000 4 1.000000 0.409359 0.860000 73.800000 trnT(ugu) tRNA trnT(ugu) trnT(ugu) 121365 121437 -1 73 SSC 0.013699 2 0 0 1 no 0.250000 2 0.500000 0.013699 1.000000 33.000000 IGS_086 igs trnT(ugu)|ycf3 trnT(ugu)-ycf3 121438 121593 0 156 SSC 0.145299 36 23 16 5 no 1.000000 4 1.000000 0.139224 0.993590 77.800000 ycf3 gene ycf3 ycf3 121594 122097 1 504 SSC 0.060847 50 0 1 3 no 1.000000 4 1.000000 0.060847 1.000000 76.700000 IGS_087 igs ycf3|trnE(uuc) ycf3-trnE(uuc) 122098 122204 0 107 SSC 0.434579 74 11 4 73 no 1.000000 4 1.000000 0.448713 0.971963 77.700000 trnE(uuc) tRNA trnE(uuc) trnE(uuc) 122205 122277 -1 73 SSC 0.000000 0 0 2 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_088 igs trnE(uuc)|trnS(gcu) trnE(uuc)-trnS(gcu) 122278 122509 0 232 SSC 0.181034 64 30 75 92 no 1.000000 4 1.000000 0.193653 0.875000 80.800000 trnS(gcu) tRNA trnS(gcu) trnS(gcu) 122510 122598 1 89 SSC 0.000000 0 0 4 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_089 igs trnS(gcu)|rps11 trnS(gcu)-rps11 122599 122794 0 196 SSC 0.184524 57 14 93 5 no 1.000000 4 1.000000 0.189523 0.964286 77.800000 rps11 gene rps11 rps11 122795 123187 1 393 SSC 0.084394 57 0 0 0 no 1.000000 4 1.000000 0.084394 1.000000 74.400000 IGS_090 igs rps11|rpl36 rps11-rpl36 123188 123452 0 265 SSC 0.199371 80 123 21 44 no 1.000000 4 1.000000 0.225821 0.754717 71.700000 rpl36 gene rpl36 rpl36 123453 123566 1 114 SSC 0.051170 10 0 4 2 no 1.000000 4 1.000000 0.051170 1.000000 71.100000 IGS_091 igs rpl36|petD rpl36-petD 123567 123641 0 75 SSC 0.275556 31 27 11 2 no 1.000000 4 1.000000 0.326516 0.760000 71.200000 petD gene petD petD 123642 124851 1 1210 SSC 0.140898 263 240 1 1 no 1.000000 4 1.000000 0.147604 0.859504 80.600000 IGS_092 igs petD|trnR(ucg) petD-trnR(ucg) 124852 125197 0 346 SSC 0.243738 127 100 9 0 no 1.000000 4 1.000000 0.235210 0.933526 76.100000 trnR(ucg) tRNA trnR(ucg) trnR(ucg) 125198 125271 -1 74 SSC 0.087838 11 0 0 5 no 1.000000 4 1.000000 0.087838 1.000000 72.500000 IGS_093 igs trnR(ucg)|petL trnR(ucg)-petL 125272 125480 0 209 SSC 0.265372 82 74 3 9 no 1.000000 4 1.000000 0.293215 0.803828 72.100000 petL gene petL petL 125481 125579 -1 99 SSC 0.057239 10 0 2 9 no 0.500000 3 0.666667 0.057239 1.000000 63.300000 IGS_094 igs petL|psaC petL-psaC 125580 125748 0 169 SSC 0.160750 45 23 17 12 no 1.000000 4 1.000000 0.181284 0.887574 76.300000 psaC gene psaC psaC 125749 127621 -1 1873 SSC 0.166667 488 236 0 7 yes 1.000000 4 1.000000 0.167990 0.946610 82.100000 psbN gene psbN psbN 126804 126938 -1 135 SSC 0.064198 14 0 0 8 no 1.000000 4 1.000000 0.064198 1.000000 72.500000 IGS_096 igs psbN|psbH psbN-psbH 126939 127798 0 860 SSC 0.224747 295 193 14 0 no 1.000000 4 1.000000 0.234038 0.906977 81.300000 psbH gene psbH psbH 127799 128059 -1 261 SSC 0.063218 27 0 3 4 no 1.000000 4 1.000000 0.063218 1.000000 72.700000 IGS_097 igs psbH|psbT psbH-psbT 128060 128325 0 266 SSC 0.197368 83 82 16 3 no 1.000000 4 1.000000 0.261526 0.736842 71.200000 psbT gene psbT psbT 128326 128421 -1 96 SSC 0.032986 6 0 1 1 no 0.500000 3 0.666667 0.032986 1.000000 50.900000 IGS_098 igs psbT|psbB psbT-psbB 128422 128700 0 279 SSC 0.176859 79 8 50 9 no 1.000000 4 1.000000 0.174928 0.989247 76.300000 psbB gene psbB psbB 128701 131019 -1 2319 SSC 0.045566 164 789 1 11 no 1.000000 4 1.000000 0.060289 0.659336 68.100000 IGS_099 igs psbB|trnN(guu) psbB-trnN(guu) 131020 131465 0 446 SSC 0.248653 164 210 50 56 no 1.000000 4 1.000000 0.291553 0.780269 77.200000 trnN(guu) tRNA trnN(guu) trnN(guu) 131466 131537 -1 72 SSC 0.009259 1 0 0 0 no 0.000000 2 0.000000 0.009259 1.000000 24.700000 IGS_100 igs trnN(guu)|rps4 trnN(guu)-rps4 131538 131724 0 187 SSC 0.241848 71 56 15 15 no 1.000000 4 1.000000 0.267232 0.834225 74.000000 rps4 gene rps4 rps4 131725 140130 -1 8406 SSC 0.145015 1978 214 0 2 no 1.000000 4 1.000000 0.146912 0.981323 75.100000 IGS_101 igs rps4|rps8 rps4-rps8 140131 140462 0 332 SSC 0.183735 91 175 32 24 no 1.000000 4 1.000000 0.255708 0.608434 70.100000 rps8 gene rps8 rps8 140463 141005 -1 543 SSC 0.089626 82 0 0 8 no 1.000000 4 1.000000 0.089626 1.000000 77.600000 IGS_102 igs rps8|rpl5 rps8-rpl5 141006 141154 0 149 SSC 0.154362 38 18 47 6 no 1.000000 4 1.000000 0.154243 0.926174 76.800000 rpl5 gene rpl5 rpl5 141155 141697 -1 543 SSC 0.065378 59 0 4 5 no 1.000000 4 1.000000 0.065378 1.000000 77.900000 IGS_103 igs rpl5|infA rpl5-infA 141698 141820 0 123 SSC 0.241192 46 19 8 12 no 1.000000 4 1.000000 0.263967 0.918699 76.600000 infA gene infA infA 141821 142087 -1 267 SSC 0.097378 43 1 1 1 no 1.000000 4 1.000000 0.097585 1.000000 73.000000 IGS_104 igs infA|petB infA-petB 142088 142320 0 233 SSC 0.189557 72 105 0 18 no 1.000000 4 1.000000 0.308806 0.570815 67.100000 petB gene petB petB 142321 142968 -1 648 SSC 0.057356 60 0 8 3 no 1.000000 4 1.000000 0.057356 1.000000 78.000000 IGS_105 igs petB|trnG(gcc) petB-trnG(gcc) 142969 143354 0 386 SSC 0.272528 162 91 56 56 no 1.000000 4 1.000000 0.285409 0.904145 80.900000 trnG(gcc) tRNA trnG(gcc) trnG(gcc) 143355 143426 -1 72 SSC 0.009259 1 0 3 5 no 0.000000 2 0.000000 0.009259 1.000000 24.900000 IGS_106 igs trnG(gcc)|psaB trnG(gcc)-psaB 143427 143606 0 180 SSC 0.326852 94 32 15 6 no 1.000000 4 1.000000 0.327190 0.955556 76.900000 psaB gene psaB psaB 143607 145814 -1 2208 SSC 0.067708 252 0 0 5 no 1.000000 4 1.000000 0.067708 1.000000 77.300000 IGS_107 igs psaB|trnH(gug) psaB-trnH(gug) 145815 146163 0 349 SSC 0.214080 113 113 17 66 no 1.000000 4 1.000000 0.233522 0.808023 74.600000 trnH(gug) tRNA trnH(gug) trnH(gug) 146164 146235 -1 72 SSC 0.009259 1 0 1 2 no 0.000000 2 0.000000 0.009259 1.000000 24.700000 IGS_108 igs trnH(gug)|trnW(cca) trnH(gug)-trnW(cca) 146236 146578 0 343 SSC 0.177483 95 145 5 26 no 1.000000 4 1.000000 0.250610 0.658892 69.700000 trnW(cca) tRNA trnW(cca) trnW(cca) 146579 146651 1 73 SSC 0.015982 2 0 1 4 no 0.500000 3 0.666667 0.015982 1.000000 38.800000 IGS_109 igs trnW(cca)|rpoC2 trnW(cca)-rpoC2 146652 146719 0 68 SSC 0.250000 23 8 45 3 no 1.000000 4 1.000000 0.217170 0.897059 76.000000 rpoC2 gene rpoC2 rpoC2 146720 154549 -1 7830 SSC 0.177458 2234 371 1 4 no 1.000000 4 1.000000 0.181815 0.963091 77.400000 IGS_110 igs rpoC2|rpl20 rpoC2-rpl20 154550 154784 0 235 SSC 0.215603 79 35 1 15 no 1.000000 4 1.000000 0.242072 0.885106 75.300000 rpl20 gene rpl20 rpl20 154785 155144 -1 360 SSC 0.098148 58 0 0 1 no 1.000000 4 1.000000 0.098148 1.000000 73.800000 IGS_111 igs rpl20|clpP rpl20-clpP 155145 155304 0 160 SSC 0.212500 49 45 23 5 no 1.000000 4 1.000000 0.257078 0.737500 71.600000 clpP gene clpP clpP 155305 156987 -1 1683 SSC 0.101901 278 12 0 3 no 1.000000 4 1.000000 0.101314 1.000000 79.200000 IGS_112 igs clpP|psbE clpP-psbE 156988 157543 0 556 SSC 0.247093 194 117 8 15 no 1.000000 4 1.000000 0.258656 0.843525 79.300000 psbE gene psbE psbE 157544 157789 -1 246 SSC 0.042005 18 0 2 8 no 1.000000 4 1.000000 0.042005 1.000000 65.700000 IGS_113 igs psbE|rps2 psbE-rps2 157790 158044 0 255 SSC 0.263399 105 91 38 0 no 1.000000 4 1.000000 0.282536 0.921569 74.400000 rps2 gene rps2 rps2 158045 158956 -1 912 SSC 0.102522 154 4 0 3 no 1.000000 4 1.000000 0.102957 0.995614 79.200000 IGS_114 igs rps2|rpoA rps2-rpoA 158957 159072 0 116 SSC 0.229532 43 12 5 9 no 1.000000 4 1.000000 0.227492 0.965517 77.500000 rpoA gene rpoA rpoA 159073 160320 1 1248 SSC 0.187767 381 34 5 0 yes 1.000000 4 1.000000 0.190171 0.979968 81.500000 IGS_115 igs rpoA|trnL(caa) rpoA-trnL(caa) 160321 160444 0 124 IRa 0.262500 50 12 0 46 no 1.000000 4 1.000000 0.265972 0.967742 77.100000 trnL(caa) tRNA trnL(caa) trnL(caa) 160445 160525 1 81 IRa 0.047325 6 0 2 2 no 0.500000 3 0.666667 0.047325 1.000000 58.800000 IGS_116 igs trnL(caa)|rps14 trnL(caa)-rps14 160526 160645 0 120 IRa 0.136111 25 67 27 18 no 1.000000 4 1.000000 0.261816 0.508333 67.700000 rps14 gene rps14 rps14 160646 160948 -1 303 IRa 0.033553 16 0 60 6 no 0.500000 3 0.666667 0.033553 1.000000 50.300000 IGS_117 igs rps14|rrs rps14-rrs 160949 161918 0 970 IRa 0.128694 187 331 11 73 no 1.000000 4 1.000000 0.173610 0.675258 76.600000 rrs_part1 rRNA rrs rrs 161919 162321 1 403 IRa 0.011166 8 1 13 19 no 0.500000 3 0.666667 0.011194 0.997519 39.000000 rrs_part2 rRNA rrs rrs 162760 163842 1 1083 IRa 0.002924 5 0 28 3 no 0.500000 3 0.666667 0.002924 1.000000 36.500000 IGS_120 igs rrs|trnI(gau) rrs-trnI(gau) 163843 164046 0 204 IRa 0.253268 79 82 259 85 no 1.000000 4 1.000000 0.285379 0.848039 78.900000 trnI(gau) tRNA trnI(gau) trnI(gau) 164047 164120 1 74 IRa 0.000000 0 0 5 11 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_121 igs trnI(gau)|trnA(ugc) trnI(gau)-trnA(ugc) 164121 164389 0 269 IRa 0.225641 89 65 79 148 no 1.000000 4 1.000000 0.255768 0.817844 78.800000 trnA(ugc) tRNA trnA(ugc) trnA(ugc) 164390 164462 1 73 IRa 0.000000 0 0 16 75 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_122 igs trnA(ugc)|rrl trnA(ugc)-rrl 164463 164695 0 233 IRa 0.098253 34 99 89 23 no 1.000000 4 1.000000 0.164143 0.583691 69.000000 rrl_part1 rRNA rrl rrl 164696 167259 1 2564 IRa 0.016511 66 5 9 300 no 1.000000 4 1.000000 0.016137 1.000000 53.100000 rrl_part2 rRNA rrl rrl 168316 168411 1 96 IRa 0.006944 1 3 300 5 no 0.500000 3 0.666667 0.003509 0.989583 36.400000 IGS_125 igs rrl|orf225 rrl-orf225 168412 168570 0 159 IRa 0.285115 67 159 2 1 no 1.000000 4 1.000000 0.302370 0.924528 71.600000 orf225 gene orf225 orf225 168571 169248 1 678 IRa 0.207473 204 678 3 0 no 1.000000 4 1.000000 0.308324 0.631268 74.100000 IGS_126 igs orf225|rrl orf225-rrl 169249 169688 0 440 IRa 0.121705 72 437 46 103 no 1.000000 4 1.000000 0.238160 0.381818 71.100000 rrl_part3 rRNA rrl rrl 169689 170002 1 314 IRa 0.007962 4 0 0 67 no 0.500000 3 0.666667 0.007962 1.000000 33.600000 IGS_127 igs rrl|rrf rrl-rrf 170003 170119 0 117 IRa 0.065527 11 53 43 69 no 1.000000 4 1.000000 0.091391 0.547009 69.300000 rrf rRNA rrf rrf 170120 170245 1 126 IRa 0.018519 4 0 27 2 no 0.500000 3 0.666667 0.018519 1.000000 40.600000 IGS_128 igs rrf|cemA rrf-cemA 170246 170400 0 155 IRa 0.306452 66 39 5 35 no 1.000000 4 1.000000 0.261787 0.877419 74.700000 cemA gene cemA cemA 170401 171267 1 867 IRa 0.023068 34 0 15 2 no 1.000000 4 1.000000 0.023068 1.000000 59.200000 IGS_129 igs cemA|rbcL cemA-rbcL 171268 171561 0 294 IRa 0.154762 67 69 30 41 no 1.000000 4 1.000000 0.157890 0.887755 76.900000 rbcL gene rbcL rbcL 171562 172989 1 1428 IRa 0.020308 49 0 12 2 no 1.000000 4 1.000000 0.020308 1.000000 57.300000 IGS_130 igs rbcL|orf532 rbcL-orf532 172990 175600 0 2611 IRa 0.367158 801 2124 6 4 no 1.000000 4 1.000000 0.410445 0.230563 67.100000 orf532 gene orf532 orf532 175601 177202 -1 1602 IRa 0.441615 444 1550 1 2 no 1.000000 4 1.000000 0.471695 0.049938 66.700000 IGS_131 igs orf532|orf258 orf532-orf258 177203 182508 0 5306 IRa 0.460036 1740 4970 8 1 yes 1.000000 4 1.000000 0.458376 0.096495 61.300000 orf258 gene orf258 orf258 182509 183288 -1 780 IRa 0.463554 210 771 0 0 yes 1.000000 4 1.000000 0.557381 0.035897 66.700000 IGS_132 igs orf258|orf212 orf258-orf212 183289 187252 0 3964 IRa 0.443748 884 3893 1 7 yes 1.000000 4 1.000000 0.432194 0.045913 62.300000 orf212 gene orf212 orf212 187253 187894 -1 642 IRa 0.481771 185 642 1 0 no 0.500000 3 0.666667 NA 0.000000 56.900000 IGS_133 igs orf212|psbA orf212-psbA 187895 189333 0 1439 IRa 0.394737 318 1291 5 3 yes 1.000000 4 1.000000 0.237777 0.129256 68.100000 psbA gene psbA psbA 189334 194384 -1 5051 IRa 0.076300 497 4016 39 16 no 1.000000 4 1.000000 0.046530 0.662245 69.300000 orf247 gene orf247 orf247 189704 190447 -1 744 IRa 0.126016 94 744 0 22 no 1.000000 4 1.000000 NA 0.017473 66.500000 IGS_135 igs orf247|orf393 orf247-orf393 190448 192514 0 2067 IRa 0.082921 221 1691 8 5 no 1.000000 4 1.000000 0.048589 0.834059 75.900000 orf393 gene orf393 orf393 192515 193696 -1 1182 IRa 0.067964 120 1182 1 0 no 1.000000 4 1.000000 0.134683 0.494078 72.400000 IGS_136 igs orf393|ccsA orf393-ccsA 193697 194959 0 1263 IRa 0.078054 153 342 4 30 no 1.000000 4 1.000000 0.085412 0.868567 80.400000 ccsA_part2 gene ccsA ccsA 194960 195349 -1 390 IRa 0.039316 24 9 3 6 no 1.000000 4 1.000000 0.036430 0.992308 67.500000