feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH-GTG tRNA trnH-GTG trnH-GTG 15 88 -1 74 LSC 0.000000 0 0 4 39 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_001 igs trnH-GTG|psbA trnH-GTG-psbA 89 536 0 448 LSC 0.035985 29 13 78 42 yes 1.000000 4 1.000000 0.034374 0.970982 70.700000 psbA gene psbA psbA 537 1598 -1 1062 LSC 0.003766 8 0 0 28 no 0.500000 3 0.666667 0.003766 1.000000 37.000000 IGS_002 igs psbA|matK psbA-matK 1599 2221 0 623 LSC 0.017931 20 56 44 17 no 1.000000 4 1.000000 0.017931 0.910112 60.100000 matK gene matK matK 2222 3757 -1 1536 LSC 0.016776 51 6 4 21 no 1.000000 4 1.000000 0.016776 0.996094 56.000000 IGS_003 igs matK|rps16 matK-rps16 3758 5131 0 1374 LSC 0.024084 60 79 17 21 yes 1.000000 4 1.000000 0.022868 0.943959 65.600000 rps16 gene rps16 rps16 5132 6296 -1 1165 LSC 0.015349 35 15 17 20 no 1.000000 4 1.000000 0.015354 0.987983 56.900000 IGS_004 igs rps16|trnQ-TTG rps16-trnQ-TTG 6297 7571 0 1275 LSC 0.028931 60 224 79 104 yes 1.000000 4 1.000000 0.027774 0.829804 68.700000 trnQ-TTG tRNA trnQ-TTG trnQ-TTG 7572 7643 -1 72 LSC 0.000000 0 0 12 32 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_005 igs trnQ-TTG|psbK trnQ-TTG-psbK 7644 7997 0 354 LSC 0.015195 10 3 84 137 no 1.000000 4 1.000000 0.015195 0.991525 56.000000 psbK gene psbK psbK 7998 8183 1 186 LSC 0.002688 1 0 29 4 no 0.250000 2 0.500000 0.002688 1.000000 25.600000 IGS_006 igs psbK|psbI psbK-psbI 8184 8583 0 400 LSC 0.022556 17 10 48 162 no 1.000000 4 1.000000 0.020786 0.975000 61.000000 psbI gene psbI psbI 8584 8694 1 111 LSC 0.000000 0 0 91 51 no 0.000000 1 0.000000 0.000000 1.000000 22.600000 IGS_007 igs psbI|trnS-GCT psbI-trnS-GCT 8695 8825 0 131 LSC 0.015267 4 0 202 108 no 0.250000 2 0.500000 0.015267 1.000000 42.200000 trnS-GCT tRNA trnS-GCT trnS-GCT 8826 8913 -1 88 LSC 0.000000 0 0 75 20 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_008 igs trnS-GCT|trnR-TCT trnS-GCT-trnR-TCT 8914 10739 0 1826 LSC 0.029293 105 15 163 115 yes 1.000000 4 1.000000 0.029140 0.993428 72.800000 trnR-TCT tRNA trnR-TCT trnR-TCT 10740 10811 1 72 LSC 0.000000 0 0 10 43 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_009 igs trnR-TCT|atpA trnR-TCT-atpA 10812 11029 0 218 LSC 0.018692 8 5 82 20 no 0.500000 3 0.666667 0.018728 0.981651 44.800000 atpA gene atpA atpA 11030 12553 -1 1524 LSC 0.008311 25 0 14 15 no 1.000000 4 1.000000 0.008311 1.000000 50.500000 IGS_010 igs atpA|atpF atpA-atpF 12554 12614 0 61 LSC 0.065574 8 0 41 18 no 0.250000 2 0.500000 0.065574 1.000000 59.800000 atpF gene atpF atpF 12615 13952 -1 1338 LSC 0.006772 18 12 2 42 no 1.000000 4 1.000000 0.006780 0.992526 49.500000 IGS_011 igs atpF|atpH atpF-atpH 13953 14443 0 491 LSC 0.043897 35 33 12 129 yes 1.000000 4 1.000000 0.036767 0.942974 75.200000 atpH gene atpH atpH 14444 14689 -1 246 LSC 0.008808 4 0 9 17 no 0.500000 3 0.666667 0.008808 1.000000 34.800000 IGS_012 igs atpH|atpI atpH-atpI 14690 15942 0 1253 LSC 0.024884 60 46 20 249 no 1.000000 4 1.000000 0.025029 0.966480 65.800000 atpI gene atpI atpI 15943 16686 -1 744 LSC 0.006720 10 0 25 19 no 1.000000 4 1.000000 0.006720 1.000000 49.900000 IGS_013 igs atpI|rps2 atpI-rps2 16687 16897 0 211 LSC 0.018957 8 0 29 3 no 0.250000 2 0.500000 0.018957 1.000000 36.900000 rps2 gene rps2 rps2 16898 17608 -1 711 LSC 0.007736 11 0 5 2 no 0.500000 3 0.666667 0.007736 1.000000 39.900000 IGS_014 igs rps2|rpoC2 rps2-rpoC2 17609 17795 0 187 LSC 0.002732 1 4 55 10 no 0.250000 2 0.500000 0.002732 0.978610 28.000000 rpoC2 gene rpoC2 rpoC2 17796 22007 -1 4212 LSC 0.009813 82 0 184 18 no 1.000000 4 1.000000 0.009813 1.000000 46.900000 IGS_015 igs rpoC2|rpoC1 rpoC2-rpoC1 22008 22176 0 169 LSC 0.021696 7 0 96 80 no 0.500000 3 0.666667 0.021696 1.000000 49.100000 rpoC1 gene rpoC1 rpoC1 22177 24978 -1 2802 LSC 0.007692 43 16 2 143 no 1.000000 4 1.000000 0.007702 0.997145 47.200000 IGS_016 igs rpoC1|rpoB rpoC1-rpoB 24979 25004 0 26 LSC 0.000000 0 0 69 117 no 0.000000 1 0.000000 0.000000 1.000000 23.900000 rpoB gene rpoB rpoB 25005 28217 -1 3213 LSC 0.006692 42 0 95 3 no 1.000000 4 1.000000 0.006692 1.000000 45.200000 IGS_017 igs rpoB|trnC-GCA rpoB-trnC-GCA 28218 29461 0 1244 LSC 0.015873 38 47 18 65 no 1.000000 4 1.000000 0.015873 0.962219 59.400000 trnC-GCA tRNA trnC-GCA trnC-GCA 29462 29532 1 71 LSC 0.007042 1 0 9 2 no 0.250000 2 0.500000 0.007042 1.000000 28.500000 IGS_018 igs trnC-GCA|petN trnC-GCA-petN 29533 30331 0 799 LSC 0.022707 32 72 5 17 no 1.000000 4 1.000000 0.022333 0.918648 62.600000 petN gene petN petN 30332 30421 1 90 LSC 0.011111 2 0 39 5 no 0.250000 2 0.500000 0.011111 1.000000 31.600000 IGS_019 igs petN|psbM petN-psbM 30422 31707 0 1286 LSC 0.030507 74 57 27 27 yes 1.000000 4 1.000000 0.028967 0.978227 71.300000 psbM gene psbM psbM 31708 31812 -1 105 LSC 0.004762 1 0 30 14 no 0.250000 2 0.500000 0.004762 1.000000 27.800000 IGS_020 igs psbM|trnD-GTC psbM-trnD-GTC 31813 33002 0 1190 LSC 0.017727 38 177 77 82 no 1.000000 4 1.000000 0.016361 0.961345 65.500000 trnD-GTC tRNA trnD-GTC trnD-GTC 33003 33076 -1 74 LSC 0.000000 0 0 36 8 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_021 igs trnD-GTC|trnY-GTA trnD-GTC-trnY-GTA 33077 33562 0 486 LSC 0.029265 26 41 110 170 yes 1.000000 4 1.000000 0.029767 0.960905 74.000000 trnY-GTA tRNA trnY-GTA trnY-GTA 33563 33646 -1 84 LSC 0.000000 0 0 9 86 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_022 igs trnY-GTA|trnE-TTC trnY-GTA-trnE-TTC 33647 33705 0 59 LSC 0.000000 0 0 93 27 no 0.000000 1 0.000000 0.000000 1.000000 20.800000 trnE-TTC tRNA trnE-TTC trnE-TTC 33706 33778 -1 73 LSC 0.006849 1 0 152 96 no 0.250000 2 0.500000 0.006849 1.000000 35.400000 IGS_023 igs trnE-TTC|trnT-GGT trnE-TTC-trnT-GGT 33779 34398 0 620 LSC 0.020487 20 375 45 75 no 1.000000 4 1.000000 0.015165 0.969355 61.100000 trnT-GGT tRNA trnT-GGT trnT-GGT 34399 34470 1 72 LSC 0.000000 0 72 25 3 no 0.250000 2 0.500000 0.000000 1.000000 23.700000 IGS_024 igs trnT-GGT|psbD trnT-GGT-psbD 34471 35718 0 1248 LSC 0.025745 48 1070 97 80 yes 1.000000 4 1.000000 0.020634 0.985577 66.000000 psbD gene psbD psbD 35719 36780 1 1062 LSC 0.004237 9 0 15 300 no 0.500000 3 0.666667 0.004237 1.000000 38.500000 psbC gene psbC psbC 36764 38149 1 1386 LSC 0.004810 13 0 52 86 no 0.500000 3 0.666667 0.004810 1.000000 41.600000 IGS_026 igs psbC|trnS-TGA psbC-trnS-TGA 38150 38403 0 254 LSC 0.029614 12 12 144 106 yes 1.000000 4 1.000000 0.029614 0.952756 68.900000 trnS-TGA tRNA trnS-TGA trnS-TGA 38404 38496 -1 93 LSC 0.000000 0 0 40 13 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_027 igs trnS-TGA|psbZ trnS-TGA-psbZ 38497 38851 0 355 LSC 0.031519 22 6 133 68 yes 0.500000 3 0.666667 0.031519 0.983099 57.800000 psbZ gene psbZ psbZ 38852 39040 1 189 LSC 0.007937 3 0 55 12 no 0.250000 2 0.500000 0.007937 1.000000 29.900000 IGS_028 igs psbZ|trnG-GCC psbZ-trnG-GCC 39041 39701 0 661 LSC 0.025350 29 91 27 138 no 1.000000 4 1.000000 0.025397 0.863843 64.000000 trnG-GCC tRNA trnG-GCC trnG-GCC 39702 39772 1 71 LSC 0.000000 0 0 46 67 no 0.000000 1 0.000000 0.000000 1.000000 22.200000 IGS_029 igs trnG-GCC|trnM-CAT trnG-GCC-trnM-CAT 39773 39948 0 176 LSC 0.014205 5 4 117 85 no 1.000000 4 1.000000 0.014447 0.977273 56.000000 trnM-CAT tRNA trnM-CAT trnM-CAT 39949 40022 -1 74 LSC 0.000000 0 0 7 11 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_030 igs trnM-CAT|rps14 trnM-CAT-rps14 40023 40186 0 164 LSC 0.023374 7 0 81 42 no 1.000000 4 1.000000 0.023374 1.000000 56.500000 rps14 gene rps14 rps14 40187 40489 -1 303 LSC 0.004950 3 0 17 2 no 0.500000 3 0.666667 0.004950 1.000000 31.800000 IGS_031 igs rps14|psaB rps14-psaB 40490 40626 0 137 LSC 0.007299 2 0 12 24 no 0.250000 2 0.500000 0.007299 1.000000 29.400000 psaB gene psaB psaB 40627 42831 -1 2205 LSC 0.005140 22 69 15 45 no 1.000000 4 1.000000 0.005042 1.000000 50.600000 IGS_032 igs psaB|psaA psaB-psaA 42832 42856 0 25 LSC 0.000000 0 0 152 20 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 psaA gene psaA psaA 42857 45109 -1 2253 LSC 0.005326 24 0 177 69 no 0.500000 3 0.666667 0.005326 1.000000 41.700000 IGS_033 igs psaA|ycf3 psaA-ycf3 45110 45811 0 702 LSC 0.020476 23 47 29 167 no 1.000000 4 1.000000 0.013639 0.987179 64.700000 ycf3 gene ycf3 ycf3 45812 47845 -1 2034 LSC 0.009677 39 24 29 49 no 1.000000 4 1.000000 0.009687 0.990659 52.700000 IGS_034 igs ycf3|trnS-GGA ycf3-trnS-GGA 47846 48242 0 397 LSC 0.017343 13 6 158 118 no 1.000000 4 1.000000 0.016570 0.987406 61.700000 trnS-GGA tRNA trnS-GGA trnS-GGA 48243 48329 1 87 LSC 0.000000 0 0 29 31 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_035 igs trnS-GGA|rps4 trnS-GGA-rps4 48330 48625 0 296 LSC 0.021505 12 17 116 42 no 0.250000 2 0.500000 0.021505 0.942568 45.500000 rps4 gene rps4 rps4 48626 49231 -1 606 LSC 0.004950 6 0 15 85 no 0.500000 3 0.666667 0.004950 1.000000 39.000000 IGS_036 igs rps4|trnT-TGT rps4-trnT-TGT 49232 49578 0 347 LSC 0.018299 12 10 186 89 no 1.000000 4 1.000000 0.018299 0.971182 60.300000 trnT-TGT tRNA trnT-TGT trnT-TGT 49579 49651 -1 73 LSC 0.000000 0 0 5 16 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_037 igs trnT-TGT|trnF-GAA trnT-TGT-trnF-GAA 49652 51045 0 1394 LSC 0.019622 54 2 78 116 no 1.000000 4 1.000000 0.019627 0.999283 63.400000 trnF-GAA tRNA trnF-GAA trnF-GAA 51046 51118 1 73 LSC 0.000000 0 4 5 43 no 0.250000 2 0.500000 0.000000 0.945205 28.100000 IGS_038 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 51119 51488 0 370 LSC 0.020245 14 21 78 234 no 1.000000 4 1.000000 0.019474 0.945946 63.000000 ndhJ gene ndhJ ndhJ 51489 51965 -1 477 LSC 0.004193 4 0 31 69 no 0.250000 2 0.500000 0.004193 1.000000 32.400000 IGS_039 igs ndhJ|ndhK ndhJ-ndhK 51966 52081 0 116 LSC 0.012931 3 0 38 50 no 0.500000 3 0.666667 0.012931 1.000000 40.000000 ndhK gene ndhK ndhK 52082 52774 -1 693 LSC 0.002193 3 9 7 18 no 0.250000 2 0.500000 0.002193 0.987013 32.900000 IGS_040 igs ndhK|ndhC ndhK-ndhC 52775 52838 0 64 LSC 0.016393 2 3 300 69 no 0.250000 2 0.500000 0.016393 0.953125 44.100000 ndhC gene ndhC ndhC 52839 53201 -1 363 LSC 0.002755 2 0 38 32 no 0.250000 2 0.500000 0.002755 1.000000 29.100000 IGS_041 igs ndhC|trnM-CAT ndhC-trnM-CAT 53202 55005 0 1804 LSC 0.012448 43 59 122 110 no 1.000000 4 1.000000 0.012482 0.970067 63.000000 trnM-CAT tRNA trnM-CAT trnM-CAT 55006 55078 1 73 LSC 0.000000 0 0 33 37 no 0.000000 1 0.000000 0.000000 1.000000 21.200000 IGS_042 igs trnM-CAT|atpE trnM-CAT-atpE 55079 55254 0 176 LSC 0.021442 7 5 106 141 no 0.500000 3 0.666667 0.021442 0.971591 53.200000 atpE gene atpE atpE 55255 55656 -1 402 LSC 0.006219 5 0 46 122 no 0.500000 3 0.666667 0.006219 1.000000 38.100000 atpB gene atpB atpB 55653 57149 -1 1497 LSC 0.004342 13 0 22 72 no 0.500000 3 0.666667 0.004342 1.000000 39.100000 IGS_044 igs atpB|rbcL atpB-rbcL 57150 57936 0 787 LSC 0.013479 21 69 122 203 yes 1.000000 4 1.000000 0.013902 0.988564 67.600000 rbcL gene rbcL rbcL 57937 59364 1 1428 LSC 0.005747 16 7 66 115 no 1.000000 4 1.000000 0.005747 0.995098 53.100000 IGS_045 igs rbcL|accD rbcL-accD 59365 59947 0 583 LSC 0.007895 9 30 14 35 no 1.000000 4 1.000000 0.008075 0.948542 54.600000 accD gene accD accD 59948 61444 1 1497 LSC 0.008016 24 0 34 46 no 1.000000 4 1.000000 0.008016 1.000000 51.900000 IGS_046 igs accD|psaI accD-psaI 61445 62226 0 782 LSC 0.017287 26 30 8 4 no 1.000000 4 1.000000 0.017287 0.961637 59.400000 psaI gene psaI psaI 62227 62340 1 114 LSC 0.013158 3 0 48 18 no 0.500000 3 0.666667 0.013158 1.000000 38.700000 IGS_047 igs psaI|ycf4 psaI-ycf4 62341 62784 0 444 LSC 0.013825 12 10 50 56 no 0.500000 3 0.666667 0.013825 0.977477 46.500000 ycf4 gene ycf4 ycf4 62785 63339 1 555 LSC 0.008108 9 0 51 4 no 0.500000 3 0.666667 0.008108 1.000000 39.400000 IGS_048 igs ycf4|cemA ycf4-cemA 63340 64083 0 744 LSC 0.021438 31 24 84 86 yes 1.000000 4 1.000000 0.021472 0.971774 67.900000 cemA gene cemA cemA 64084 64788 1 705 LSC 0.010638 15 0 7 12 no 0.500000 3 0.666667 0.010638 1.000000 42.300000 IGS_049 igs cemA|petA cemA-petA 64789 65023 0 235 LSC 0.015603 7 0 1 62 no 0.500000 3 0.666667 0.015603 1.000000 38.900000 petA gene petA petA 65024 65986 1 963 LSC 0.008134 15 0 90 6 no 1.000000 4 1.000000 0.008134 1.000000 49.800000 IGS_050 igs petA|psbJ petA-psbJ 65987 67089 0 1103 LSC 0.023676 50 39 105 140 yes 1.000000 4 1.000000 0.023724 0.970082 71.200000 psbJ gene psbJ psbJ 67090 67212 -1 123 LSC 0.000000 0 0 55 17 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_051 igs psbJ|psbL psbJ-psbL 67213 67354 0 142 LSC 0.007042 2 0 178 12 no 0.500000 3 0.666667 0.007042 1.000000 34.000000 psbL gene psbL psbL 67355 67471 -1 117 LSC 0.004274 1 0 36 65 no 0.250000 2 0.500000 0.004274 1.000000 29.100000 IGS_052 igs psbL|psbF psbL-psbF 67472 67493 0 22 LSC 0.000000 0 0 104 43 no 0.000000 1 0.000000 0.000000 1.000000 22.000000 psbF gene psbF psbF 67494 67613 -1 120 LSC 0.004167 1 0 126 19 no 0.250000 2 0.500000 0.004167 1.000000 27.800000 IGS_053 igs psbF|psbE psbF-psbE 67614 67622 0 9 LSC 0.000000 0 0 76 10 no 0.000000 1 0.000000 NA 1.000000 19.500000 psbE gene psbE psbE 67623 67874 -1 252 LSC 0.003968 2 0 85 85 no 0.250000 2 0.500000 0.003968 1.000000 32.600000 IGS_054 igs psbE|petL psbE-petL 67875 69234 0 1360 LSC 0.017293 44 108 131 47 no 1.000000 4 1.000000 0.016372 0.977206 64.100000 petL gene petL petL 69235 69330 1 96 LSC 0.010417 2 0 110 55 no 0.500000 3 0.666667 0.010417 1.000000 39.500000 IGS_055 igs petL|petG petL-petG 69331 69507 0 177 LSC 0.020716 7 0 12 15 no 0.500000 3 0.666667 0.020716 1.000000 43.300000 petG gene petG petG 69508 69621 1 114 LSC 0.004386 1 0 2 41 no 0.250000 2 0.500000 0.004386 1.000000 26.700000 IGS_056 igs petG|trnW-CCA petG-trnW-CCA 69622 69763 0 142 LSC 0.021127 6 0 98 113 no 0.250000 2 0.500000 0.021127 1.000000 45.600000 trnW-CCA tRNA trnW-CCA trnW-CCA 69764 69837 -1 74 LSC 0.000000 0 0 15 39 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_057 igs trnW-CCA|trnP-TGG trnW-CCA-trnP-TGG 69838 70010 0 173 LSC 0.022158 7 1 89 83 no 1.000000 4 1.000000 0.022203 1.000000 59.400000 trnP-TGG tRNA trnP-TGG trnP-TGG 70011 70084 -1 74 LSC 0.000000 0 0 10 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_058 igs trnP-TGG|psaJ trnP-TGG-psaJ 70085 70443 0 359 LSC 0.009749 7 3 84 28 no 1.000000 4 1.000000 0.009797 0.994429 48.500000 psaJ gene psaJ psaJ 70444 70578 1 135 LSC 0.003704 1 0 63 41 no 0.250000 2 0.500000 0.003704 1.000000 29.100000 IGS_059 igs psaJ|rpl33 psaJ-rpl33 70579 71070 0 492 LSC 0.025934 25 11 106 211 yes 1.000000 4 1.000000 0.025971 0.977642 69.500000 rpl33 gene rpl33 rpl33 71071 71271 1 201 LSC 0.000000 0 0 47 10 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_060 igs rpl33|rps18 rpl33-rps18 71272 71463 0 192 LSC 0.026042 10 0 248 53 no 1.000000 4 1.000000 0.026042 1.000000 59.700000 rps18 gene rps18 rps18 71464 71769 1 306 LSC 0.006536 4 0 27 25 no 0.250000 2 0.500000 0.006536 1.000000 30.000000 IGS_061 igs rps18|rpl20 rps18-rpl20 71770 72041 0 272 LSC 0.015903 8 13 23 114 no 1.000000 4 1.000000 0.016051 0.952206 54.400000 rpl20 gene rpl20 rpl20 72042 72404 -1 363 LSC 0.008475 6 9 88 18 no 0.250000 2 0.500000 0.008475 0.975207 34.200000 IGS_062 igs rpl20|rps12 rpl20-rps12 72405 73165 0 761 LSC 0.010582 16 11 52 160 no 1.000000 4 1.000000 0.010610 0.993430 56.500000 rps12_part1 gene rps12 rps12 73166 73279 -1 114 LSC 0.000000 0 0 26 46 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_063 igs rps12|clpP rps12-clpP 73280 73384 0 105 LSC 0.014286 3 0 140 9 no 0.250000 2 0.500000 0.014286 1.000000 34.100000 clpP gene clpP clpP 73385 75487 -1 2103 LSC 0.013455 48 32 2 44 no 1.000000 4 1.000000 0.010928 0.985259 53.000000 IGS_064 igs clpP|psbB clpP-psbB 75488 75910 0 423 LSC 0.005924 5 7 30 257 no 1.000000 4 1.000000 0.005987 0.983452 48.000000 psbB gene psbB psbB 75911 77437 1 1527 LSC 0.004693 14 0 71 38 no 1.000000 4 1.000000 0.004693 1.000000 49.800000 IGS_065 igs psbB|psbT psbB-psbT 77438 77633 0 196 LSC 0.010204 4 0 35 80 no 0.250000 2 0.500000 0.010204 1.000000 33.200000 psbT gene psbT psbT 77634 77741 1 108 LSC 0.004630 1 0 92 300 no 0.250000 2 0.500000 0.004630 1.000000 33.600000 IGS_066 igs psbT|psbN psbT-psbN 77742 77808 0 67 LSC 0.000000 0 1 27 300 no 0.250000 2 0.500000 0.000000 0.985075 26.800000 psbN gene psbN psbN 77809 77940 -1 132 LSC 0.000000 0 0 94 300 no 0.000000 1 0.000000 0.000000 1.000000 25.800000 IGS_067 igs psbN|psbH psbN-psbH 77941 78049 0 109 LSC 0.000000 0 5 226 239 no 0.250000 2 0.500000 0.000000 0.954128 42.500000 psbH gene psbH psbH 78050 78271 1 222 LSC 0.000000 0 0 300 17 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_068 igs psbH|petB psbH-petB 78272 79055 0 784 LSC 0.012330 19 0 300 42 no 1.000000 4 1.000000 0.012330 1.000000 55.500000 petB gene petB petB 79056 79754 1 699 LSC 0.005961 8 0 7 57 no 1.000000 4 1.000000 0.005961 1.000000 48.400000 IGS_069 igs petB|petD petB-petD 79755 80713 0 959 LSC 0.017032 32 1 204 41 no 1.000000 4 1.000000 0.017038 1.000000 58.800000 petD gene petD petD 80714 81190 1 477 LSC 0.005241 5 0 19 93 no 1.000000 4 1.000000 0.005241 1.000000 46.300000 IGS_070 igs petD|rpoA petD-rpoA 81191 81440 0 250 LSC 0.014000 6 60 174 20 no 1.000000 4 1.000000 0.010632 1.000000 52.700000 rpoA gene rpoA rpoA 81441 82427 -1 987 LSC 0.012665 25 0 37 9 no 1.000000 4 1.000000 0.012665 1.000000 53.300000 IGS_071 igs rpoA|rps11 rpoA-rps11 82428 82491 0 64 LSC 0.007812 1 0 20 18 no 0.250000 2 0.500000 0.007812 1.000000 30.300000 rps11 gene rps11 rps11 82492 82908 -1 417 LSC 0.004796 4 0 54 4 no 0.500000 3 0.666667 0.004796 1.000000 34.200000 IGS_072 igs rps11|rpl36 rps11-rpl36 82909 83025 0 117 LSC 0.012821 3 0 17 167 no 0.250000 2 0.500000 0.012821 1.000000 33.700000 rpl36 gene rpl36 rpl36 83026 83139 -1 114 LSC 0.000000 0 0 41 53 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_073 igs rpl36|rps8 rpl36-rps8 83140 83542 0 403 LSC 0.028199 22 7 155 75 yes 1.000000 4 1.000000 0.028199 0.982630 66.300000 rps8 gene rps8 rps8 83543 83947 -1 405 LSC 0.012346 10 0 11 9 no 0.500000 3 0.666667 0.012346 1.000000 39.600000 IGS_074 igs rps8|rpl14 rps8-rpl14 83948 84079 0 132 LSC 0.026515 7 0 47 42 no 1.000000 4 1.000000 0.026515 1.000000 59.200000 rpl14 gene rpl14 rpl14 84080 84448 -1 369 LSC 0.006775 5 0 10 72 no 1.000000 4 1.000000 0.006775 1.000000 44.400000 IGS_075 igs rpl14|rpl16 rpl14-rpl16 84449 84605 0 157 LSC 0.032374 9 21 149 6 no 1.000000 4 1.000000 0.032805 0.872611 61.400000 rpl16 gene rpl16 rpl16 84606 85016 -1 411 LSC 0.009732 8 0 47 5 no 1.000000 4 1.000000 0.009732 1.000000 47.000000 IGS_076 igs rpl16|rps3 rpl16-rps3 85017 86221 0 1205 LSC 0.019182 45 37 42 8 no 1.000000 4 1.000000 0.019238 0.969295 60.400000 rps3 gene rps3 rps3 86222 86881 -1 660 LSC 0.009848 13 0 56 2 no 1.000000 4 1.000000 0.009848 1.000000 50.800000 rpl22 gene rpl22 rpl22 86866 87363 -1 498 IRb 0.014056 14 0 78 18 no 0.500000 3 0.666667 0.014056 1.000000 43.400000 IGS_078 igs rpl22|rps19 rpl22-rps19 87364 87392 0 29 IRb 0.017241 1 0 119 300 no 0.250000 2 0.500000 0.017241 1.000000 44.400000 rps19 gene rps19 rps19 87393 87671 -1 279 IRb 0.000000 0 0 10 23 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_079 igs rps19|rpl2 rps19-rpl2 87672 87747 0 76 IRb 0.026316 4 0 289 24 no 0.500000 3 0.666667 0.026316 1.000000 48.300000 rpl2 gene rpl2 rpl2 87748 89257 -1 1510 IRb 0.002097 6 0 37 15 no 1.000000 4 1.000000 0.002097 1.000000 46.300000 IGS_080 igs rpl2|rpl23 rpl2-rpl23 89258 89275 0 18 IRb 0.027778 1 0 183 228 no 0.250000 2 0.500000 NA 1.000000 56.600000 rpl23 gene rpl23 rpl23 89276 89557 -1 282 IRb 0.001773 1 0 2 5 no 0.250000 2 0.500000 0.001773 1.000000 24.800000 IGS_081 igs rpl23|trnI-CAT rpl23-trnI-CAT 89558 89722 0 165 IRb 0.003030 1 0 53 201 no 0.250000 2 0.500000 0.003030 1.000000 29.500000 trnI-CAT tRNA trnI-CAT trnI-CAT 89723 89796 -1 74 IRb 0.000000 0 1 159 127 no 0.250000 2 0.500000 0.000000 1.000000 34.500000 IGS_082 igs trnI-CAT|ycf2 trnI-CAT-ycf2 89797 89884 0 88 IRb 0.000000 0 0 233 39 no 0.000000 1 0.000000 0.000000 1.000000 21.700000 ycf2 gene ycf2 ycf2 89885 96751 1 6867 IRb 0.001387 19 36 300 262 no 1.000000 4 1.000000 0.001389 0.995631 54.000000 IGS_083 igs ycf2|trnL-CAA ycf2-trnL-CAA 96752 97775 0 1024 IRb 0.006385 13 6 300 81 no 0.250000 2 0.500000 0.006385 0.994141 40.700000 trnL-CAA tRNA trnL-CAA trnL-CAA 97776 97856 -1 81 IRb 0.000000 0 0 17 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_084 igs trnL-CAA|ndhB trnL-CAA-ndhB 97857 98445 0 589 IRb 0.002547 3 0 98 80 no 0.250000 2 0.500000 0.002547 1.000000 37.200000 ndhB gene ndhB ndhB 98446 100672 -1 2227 IRb 0.000452 2 13 257 25 no 0.250000 2 0.500000 0.000452 0.994163 30.900000 IGS_085 igs ndhB|rps7 ndhB-rps7 100673 100994 0 322 IRb 0.004658 3 0 300 300 no 0.500000 3 0.666667 0.004658 1.000000 46.800000 rps7 gene rps7 rps7 100995 101462 -1 468 IRb 0.000000 0 0 8 232 no 0.000000 1 0.000000 0.000000 1.000000 22.900000 IGS_086 igs rps7|rps12 rps7-rps12 101463 102069 0 607 IRb 0.001647 2 0 300 300 no 0.500000 3 0.666667 0.001647 1.000000 50.500000 rps12_part2 gene rps12 rps12 102070 102312 -1 243 IRb 0.000000 0 0 72 265 no 0.000000 1 0.000000 0.000000 1.000000 24.100000 IGS_087 igs rps12|trnV-GAC rps12-trnV-GAC 102313 104118 0 1806 IRb 0.005664 20 17 300 300 no 1.000000 4 1.000000 0.005484 0.993909 63.000000 trnV-GAC tRNA trnV-GAC trnV-GAC 104119 104190 1 72 IRb 0.000000 0 0 155 300 no 0.000000 1 0.000000 0.000000 1.000000 30.400000 IGS_088 igs trnV-GAC|rrn16S trnV-GAC-rrn16S 104191 104431 0 241 IRb 0.000000 0 0 227 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 104432 105921 -1 1490 IRb 0.000671 2 0 300 104 no 0.250000 2 0.500000 0.000671 1.000000 38.000000 IGS_089 igs rrn16S|rrn23S rrn16S-rrn23S 105922 108349 0 2428 IRb 0.001243 6 14 208 300 no 0.250000 2 0.500000 0.001243 0.994234 44.100000 rrn23S rRNA rrn23S rrn23S 108350 111158 -1 2809 IRb 0.000178 1 0 131 252 no 0.250000 2 0.500000 0.000178 1.000000 36.900000 IGS_090 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 111159 111256 0 98 IRb 0.000000 0 0 300 154 no 0.000000 1 0.000000 0.000000 1.000000 30.300000 rrn4.5S rRNA rrn4.5S rrn4.5S 111257 111359 -1 103 IRb 0.000000 0 0 300 51 no 0.000000 1 0.000000 0.000000 1.000000 22.600000 IGS_091 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 111360 111583 0 224 IRb 0.008929 4 0 300 300 no 0.250000 2 0.500000 0.008929 1.000000 44.700000 rrn5S rRNA rrn5S rrn5S 111584 111704 1 121 IRb 0.000000 0 0 11 300 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_092 igs rrn5S|trnR-ACG rrn5S-trnR-ACG 111705 111959 0 255 IRb 0.000000 0 0 132 84 no 0.000000 1 0.000000 0.000000 1.000000 25.100000 trnR-ACG tRNA trnR-ACG trnR-ACG 111960 112033 1 74 IRb 0.000000 0 0 300 10 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_093 igs trnR-ACG|trnN-GTT trnR-ACG-trnN-GTT 112034 112641 0 608 IRb 0.004683 5 4 300 86 no 1.000000 4 1.000000 0.004689 0.993421 53.900000 trnN-GTT tRNA trnN-GTT trnN-GTT 112642 112713 -1 72 IRb 0.000000 0 0 300 14 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_094 igs trnN-GTT|ndhF trnN-GTT-ndhF 112714 114147 0 1434 IRb 0.010050 28 44 300 26 no 1.000000 4 1.000000 0.010064 0.971409 55.500000 ndhF gene ndhF ndhF 114148 116376 -1 2229 SSC 0.015192 66 2 5 24 yes 1.000000 4 1.000000 0.015192 0.999103 53.200000 IGS_095 igs ndhF|rpl32 ndhF-rpl32 116377 117400 0 1024 SSC 0.029928 54 67 8 65 yes 1.000000 4 1.000000 0.028057 0.939453 68.500000 rpl32 gene rpl32 rpl32 117401 117553 1 153 SSC 0.013072 4 0 8 10 no 0.250000 2 0.500000 0.013072 1.000000 33.200000 IGS_096 igs rpl32|trnL-TAG rpl32-trnL-TAG 117554 118024 0 471 SSC 0.034282 29 19 30 81 yes 1.000000 4 1.000000 0.032663 0.963907 70.200000 trnL-TAG tRNA trnL-TAG trnL-TAG 118025 118104 1 80 SSC 0.000000 0 0 11 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_097 igs trnL-TAG|ccsA trnL-TAG-ccsA 118105 118215 0 111 SSC 0.055556 10 12 91 17 yes 1.000000 4 1.000000 0.049542 0.918919 75.700000 ccsA gene ccsA ccsA 118216 119169 1 954 SSC 0.014850 27 0 11 45 no 1.000000 4 1.000000 0.014850 1.000000 54.800000 IGS_098 igs ccsA|ndhD ccsA-ndhD 119170 119539 0 370 SSC 0.047078 29 62 71 146 yes 1.000000 4 1.000000 0.047078 0.832432 75.500000 ndhD gene ndhD ndhD 119540 121057 -1 1518 SSC 0.011638 35 0 26 3 no 1.000000 4 1.000000 0.011638 1.000000 52.100000 IGS_099 igs ndhD|psaC ndhD-psaC 121058 121200 0 143 SSC 0.020979 6 0 25 251 no 1.000000 4 1.000000 0.020979 1.000000 54.100000 psaC gene psaC psaC 121201 121446 -1 246 SSC 0.000000 0 0 6 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_100 igs psaC|ndhE psaC-ndhE 121447 121681 0 235 SSC 0.037589 16 4 252 74 yes 1.000000 4 1.000000 0.034961 1.000000 70.500000 ndhE gene ndhE ndhE 121682 121987 -1 306 SSC 0.013617 8 0 5 14 no 0.500000 3 0.666667 0.013617 1.000000 38.000000 IGS_101 igs ndhE|ndhG ndhE-ndhG 121988 122251 0 264 SSC 0.017717 9 11 32 42 no 1.000000 4 1.000000 0.017745 0.962121 56.000000 ndhG gene ndhG ndhG 122252 122788 -1 537 SSC 0.010242 11 0 35 14 no 0.500000 3 0.666667 0.010242 1.000000 41.300000 IGS_102 igs ndhG|ndhI ndhG-ndhI 122789 123170 0 382 SSC 0.010638 8 6 95 26 no 0.250000 2 0.500000 0.010638 0.984293 35.900000 ndhI gene ndhI ndhI 123171 123674 -1 504 SSC 0.003968 4 0 7 13 no 0.250000 2 0.500000 0.003968 1.000000 31.000000 IGS_103 igs ndhI|ndhA ndhI-ndhA 123675 123762 0 88 SSC 0.045833 7 8 260 86 yes 0.500000 3 0.666667 0.045833 0.909091 68.100000 ndhA gene ndhA ndhA 123763 125962 -1 2200 SSC 0.014832 64 20 3 16 no 1.000000 4 1.000000 0.014832 0.990909 53.600000 IGS_104 igs ndhA|ndhH ndhA-ndhH 125963 125963 0 1 SSC 0.000000 0 0 11 15 no 0.000000 1 0.000000 NA 1.000000 19.600000 ndhH gene ndhH ndhH 125964 127145 -1 1182 SSC 0.008883 21 0 12 8 no 0.500000 3 0.666667 0.008883 1.000000 41.200000 IGS_105 igs ndhH|rps15 ndhH-rps15 127146 127246 0 101 SSC 0.026882 5 8 191 87 no 0.500000 3 0.666667 0.026882 0.920792 56.300000 rps15 gene rps15 rps15 127247 127525 -1 279 SSC 0.010989 6 6 17 22 no 0.250000 2 0.500000 0.010989 0.978495 34.300000 IGS_106 igs rps15|ycf1 rps15-ycf1 127526 127887 0 362 SSC 0.034991 24 6 3 28 no 1.000000 4 1.000000 0.033100 0.983425 64.700000 ycf1 gene ycf1 ycf1 127888 133431 -1 5544 SSC 0.018792 204 60 29 59 yes 1.000000 4 1.000000 0.018815 0.989177 53.700000 IGS_107 igs ycf1|trnN-GTT ycf1-trnN-GTT 133432 133766 0 335 IRa 0.002985 2 0 284 300 no 0.500000 3 0.666667 0.002985 1.000000 45.900000 trnN-GTT tRNA trnN-GTT trnN-GTT 133767 133838 1 72 IRa 0.000000 0 0 14 300 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_108 igs trnN-GTT|trnR-ACG trnN-GTT-trnR-ACG 133839 134446 0 608 IRa 0.004683 5 4 86 300 no 1.000000 4 1.000000 0.004689 0.993421 53.900000 trnR-ACG tRNA trnR-ACG trnR-ACG 134447 134520 -1 74 IRa 0.000000 0 0 10 300 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_109 igs trnR-ACG|rrn5S trnR-ACG-rrn5S 134521 134775 0 255 IRa 0.000000 0 0 84 132 no 0.000000 1 0.000000 0.000000 1.000000 25.100000 rrn5S rRNA rrn5S rrn5S 134776 134896 -1 121 IRa 0.000000 0 0 300 11 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_110 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 134897 135120 0 224 IRa 0.006696 3 0 300 300 no 0.250000 2 0.500000 0.006696 1.000000 43.100000 rrn4.5S rRNA rrn4.5S rrn4.5S 135121 135223 1 103 IRa 0.000000 0 0 51 300 no 0.000000 1 0.000000 0.000000 1.000000 22.600000 IGS_111 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 135224 135321 0 98 IRa 0.000000 0 0 154 300 no 0.000000 1 0.000000 0.000000 1.000000 30.300000 rrn23S rRNA rrn23S rrn23S 135322 138130 1 2809 IRa 0.000178 1 0 252 131 no 0.250000 2 0.500000 0.000178 1.000000 36.900000 IGS_112 igs rrn23S|rrn16S rrn23S-rrn16S 138131 140558 0 2428 IRa 0.001243 6 14 300 208 no 0.250000 2 0.500000 0.001243 0.994234 44.100000 rrn16S rRNA rrn16S rrn16S 140559 142048 1 1490 IRa 0.000671 2 0 104 300 no 0.250000 2 0.500000 0.000671 1.000000 38.000000 IGS_113 igs rrn16S|trnV-GAC rrn16S-trnV-GAC 142049 142289 0 241 IRa 0.000000 0 0 300 227 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnV-GAC tRNA trnV-GAC trnV-GAC 142290 142361 -1 72 IRa 0.000000 0 0 300 155 no 0.000000 1 0.000000 0.000000 1.000000 30.400000 IGS_114 igs trnV-GAC|rps12 trnV-GAC-rps12 142362 144167 0 1806 IRa 0.005664 20 17 300 300 no 1.000000 4 1.000000 0.005484 0.993909 63.000000 rps12_part2 gene rps12 rps12 144168 144410 1 243 IRa 0.000000 0 0 265 72 no 0.000000 1 0.000000 0.000000 1.000000 24.100000 IGS_115 igs rps12|rps7 rps12-rps7 144411 145017 0 607 IRa 0.000824 1 0 300 300 no 0.250000 2 0.500000 0.000824 1.000000 45.300000 rps7 gene rps7 rps7 145018 145485 1 468 IRa 0.000000 0 0 300 8 no 0.000000 1 0.000000 0.000000 1.000000 22.900000 IGS_116 igs rps7|ndhB rps7-ndhB 145486 145807 0 322 IRa 0.004658 3 0 300 300 no 0.500000 3 0.666667 0.004658 1.000000 46.800000 ndhB gene ndhB ndhB 145808 148034 1 2227 IRa 0.000452 2 13 25 257 no 0.250000 2 0.500000 0.000452 0.994163 30.900000 IGS_117 igs ndhB|trnL-CAA ndhB-trnL-CAA 148035 148623 0 589 IRa 0.002547 3 0 80 98 no 0.250000 2 0.500000 0.002547 1.000000 37.200000 trnL-CAA tRNA trnL-CAA trnL-CAA 148624 148704 1 81 IRa 0.000000 0 0 0 17 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_118 igs trnL-CAA|ycf2 trnL-CAA-ycf2 148705 149728 0 1024 IRa 0.006385 13 6 81 300 no 0.250000 2 0.500000 0.006385 0.994141 40.700000 ycf2 gene ycf2 ycf2 149729 156595 -1 6867 IRa 0.001387 19 36 262 300 no 1.000000 4 1.000000 0.001389 0.995631 54.000000 IGS_119 igs ycf2|trnI-CAT ycf2-trnI-CAT 156596 156683 0 88 IRa 0.000000 0 0 39 233 no 0.000000 1 0.000000 0.000000 1.000000 21.700000 trnI-CAT tRNA trnI-CAT trnI-CAT 156684 156757 1 74 IRa 0.000000 0 0 127 159 no 0.000000 1 0.000000 0.000000 1.000000 28.300000 IGS_120 igs trnI-CAT|rpl23 trnI-CAT-rpl23 156758 156922 0 165 IRa 0.003030 1 0 201 53 no 0.250000 2 0.500000 0.003030 1.000000 29.500000 rpl23 gene rpl23 rpl23 156923 157204 1 282 IRa 0.001773 1 0 5 2 no 0.250000 2 0.500000 0.001773 1.000000 24.800000 IGS_121 igs rpl23|rpl2 rpl23-rpl2 157205 157222 0 18 IRa 0.027778 1 0 228 183 no 0.250000 2 0.500000 NA 1.000000 56.600000 rpl2 gene rpl2 rpl2 157223 158732 1 1510 IRa 0.002097 6 0 15 37 no 1.000000 4 1.000000 0.002097 1.000000 46.300000 IGS_122 igs rpl2|rps19 rpl2-rps19 158733 158808 0 76 IRa 0.026316 4 0 24 289 no 0.500000 3 0.666667 0.026316 1.000000 48.300000 rps19 gene rps19 rps19 158809 159087 1 279 IRa 0.000000 0 0 23 10 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_123 igs rps19|trnH-GTG rps19-trnH-GTG 159088 14 0 329 IRa 0.014085 8 47 300 113 no 1.000000 4 1.000000 0.014155 0.857143 57.100000