feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score psbA gene psbA psbA 85 1146 -1 1062 LSC 0.001462 20 0 5 148 no 0.166667 17 0.588235 0.001462 1.000000 31.500000 IGS_001 igs psbA|trnK psbA-trnK 1147 1382 0 236 LSC 0.010627 22 7 300 73 no 0.300000 27 0.666667 0.010637 1.000000 50.000000 trnK_part2 tRNA trnK trnK 1383 1407 -1 25 LSC 0.000000 0 0 32 48 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 matK gene matK matK 1682 3217 -1 1536 LSC 0.004964 106 0 62 90 no 0.666667 48 0.833333 0.004964 1.000000 52.900000 IGS_004 igs matK|trnK matK-trnK 3218 3920 0 703 LSC 0.004952 43 9 32 63 no 0.450000 38 0.710526 0.004947 1.000000 47.300000 trnK_part1 tRNA trnK trnK 3921 3959 -1 39 LSC 0.000000 0 0 300 24 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_005 igs trnK|rps16 trnK-rps16 3960 4521 0 562 LSC 0.006594 59 34 300 36 no 0.533333 39 0.820513 0.006615 1.000000 58.600000 rps16 gene rps16 rps16 4522 5553 -1 1032 LSC 0.004430 48 13 254 124 no 0.666667 49 0.816327 0.004437 1.000000 56.200000 IGS_006 igs rps16|trnQ rps16-trnQ 5554 6541 0 988 LSC 0.008313 102 421 20 92 yes 0.716667 50 0.860000 0.008263 1.000000 62.200000 trnQ tRNA trnQ trnQ 6542 6613 -1 72 LSC 0.000000 0 0 3 20 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_007 igs trnQ|psbK trnQ-psbK 6614 6958 0 345 LSC 0.004988 18 2 75 59 no 0.233333 20 0.700000 0.004989 1.000000 38.000000 psbK gene psbK psbK 6959 7144 1 186 LSC 0.003174 5 0 266 16 no 0.050000 6 0.500000 0.003174 1.000000 25.700000 IGS_008 igs psbK|psbI psbK-psbI 7145 7548 0 404 LSC 0.006392 40 39 126 300 no 0.483333 38 0.763158 0.006507 0.985149 60.200000 psbI gene psbI psbI 7549 7659 1 111 LSC 0.001491 4 0 300 238 no 0.050000 5 0.600000 0.001491 1.000000 39.900000 IGS_009 igs psbI|trnS psbI-trnS 7660 7779 0 120 LSC 0.003517 7 0 300 118 no 0.066667 8 0.500000 0.003517 1.000000 37.700000 trnS tRNA trnS trnS 7780 7867 -1 88 LSC 0.000379 1 0 300 30 no 0.016667 2 0.500000 0.000379 1.000000 22.900000 IGS_010 igs trnS|psbD trnS-psbD 7868 8820 0 953 LSC 0.005923 74 58 300 287 yes 0.633333 47 0.808511 0.005816 0.993704 70.200000 psbD gene psbD psbD 8821 9882 1 1062 LSC 0.001867 24 0 235 249 no 0.233333 22 0.636364 0.001867 1.000000 48.000000 psbC gene psbC psbC 9830 11251 1 1422 LSC 0.002935 43 0 300 300 no 0.383333 32 0.718750 0.002935 1.000000 52.300000 IGS_012 igs psbC|trnS psbC-trnS 11252 11403 0 152 LSC 0.004215 10 2 78 258 no 0.116667 12 0.583333 0.004218 1.000000 38.500000 trnS tRNA trnS trnS 11404 11491 -1 88 LSC 0.000379 1 0 230 170 no 0.016667 2 0.500000 0.000379 1.000000 33.400000 IGS_013 igs trnS|psbZ trnS-psbZ 11492 11839 0 348 LSC 0.005257 27 130 300 216 no 0.333333 25 0.800000 0.005258 1.000000 59.100000 psbZ gene psbZ psbZ 11840 12028 1 189 LSC 0.000705 4 0 177 27 no 0.066667 5 0.800000 0.000705 1.000000 25.000000 IGS_014 igs psbZ|trnG psbZ-trnG 12029 12154 0 126 LSC 0.010833 16 14 300 138 no 0.200000 20 0.600000 0.006678 0.992063 55.900000 IGS_015 igs trnG|trnfM trnG-trnfM 12226 12691 0 466 LSC 0.011151 55 210 169 300 yes 0.583333 42 0.833333 0.009231 1.000000 67.400000 trnfM tRNA trnfM trnfM 12692 12764 -1 73 LSC 0.000000 0 0 146 300 no 0.000000 1 0.000000 0.000000 1.000000 29.700000 IGS_016 igs trnfM|trnG trnfM-trnG 12765 12857 0 93 LSC 0.004252 9 6 219 300 no 0.166667 12 0.833333 0.004257 1.000000 57.100000 trnG_part2 tRNA trnG trnG 12858 12905 -1 48 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnG_part1 tRNA trnG trnG 13581 13604 -1 24 LSC 0.000000 0 0 300 121 no 0.000000 1 0.000000 0.000000 1.000000 27.800000 IGS_019 igs trnG|trnT trnG-trnT 13605 15177 0 1573 LSC 0.009770 167 736 300 300 yes 0.900000 57 0.947368 0.008735 0.991736 79.100000 trnT tRNA trnT trnT 15178 15249 1 72 LSC 0.001389 3 1 11 282 no 0.050000 5 0.600000 0.001391 1.000000 28.000000 IGS_020 igs trnT|trnE trnT-trnE 15250 15750 0 501 LSC 0.005414 34 8 83 300 no 0.350000 32 0.656250 0.005417 1.000000 48.600000 trnE tRNA trnE trnE 15751 15823 1 73 LSC 0.000000 0 0 117 300 no 0.000000 1 0.000000 0.000000 1.000000 27.500000 IGS_021 igs trnE|trnY trnE-trnY 15824 15889 0 66 LSC 0.002525 5 0 190 300 no 0.083333 6 0.833333 0.002525 1.000000 45.200000 trnY tRNA trnY trnY 15890 15973 1 84 LSC 0.000397 1 0 256 224 no 0.016667 2 0.500000 0.000397 1.000000 35.700000 IGS_022 igs trnY|trnD trnY-trnD 15974 16316 0 343 LSC 0.005791 28 22 300 129 no 0.250000 24 0.625000 0.005878 1.000000 52.900000 trnD tRNA trnD trnD 16317 16390 1 74 LSC 0.000000 0 0 105 55 no 0.000000 1 0.000000 0.000000 1.000000 22.900000 IGS_023 igs trnD|psbM trnD-psbM 16391 17083 0 693 LSC 0.006560 59 150 179 290 yes 0.616667 47 0.787234 0.006567 0.997114 69.400000 psbM gene psbM psbM 17084 17188 1 105 LSC 0.000635 2 0 268 185 no 0.033333 3 0.666667 0.000635 1.000000 35.900000 IGS_024 igs psbM|trnC psbM-trnC 17189 18893 0 1705 LSC 0.008557 158 626 300 176 yes 0.800000 53 0.905660 0.008389 0.995894 74.000000 trnC tRNA trnC trnC 18894 18964 -1 71 LSC 0.000000 0 0 80 105 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 IGS_025 igs trnC|rpoB trnC-rpoB 18965 20070 0 1106 LSC 0.005636 90 313 151 257 yes 0.700000 50 0.840000 0.005589 0.998192 68.100000 rpoB gene rpoB rpoB 20071 23301 1 3231 LSC 0.001727 106 0 217 300 no 0.633333 45 0.844444 0.001727 1.000000 53.300000 IGS_026 igs rpoB|rpoC1 rpoB-rpoC1 23302 23338 0 37 LSC 0.002672 2 0 228 300 no 0.016667 3 0.333333 0.002672 1.000000 42.000000 rpoC1 gene rpoC1 rpoC1 23339 25387 1 2049 LSC 0.001818 67 30 265 105 no 0.550000 40 0.825000 0.001813 1.000000 48.800000 IGS_027 igs rpoC1|rpoC2 rpoC1-rpoC2 25388 25585 0 198 LSC 0.006365 14 7 300 300 no 0.166667 16 0.625000 0.006366 0.969697 51.700000 rpoC2 gene rpoC2 rpoC2 25586 30073 1 4488 LSC 0.002915 192 60 92 4 no 0.800000 53 0.905660 0.002936 0.994652 42.900000 IGS_028 igs rpoC2|rps2 rpoC2-rps2 30074 30350 0 277 LSC 0.008058 20 7 300 300 no 0.216667 24 0.541667 0.008058 1.000000 53.600000 rps2 gene rps2 rps2 30351 31061 1 711 LSC 0.001066 17 0 19 300 no 0.216667 17 0.764706 0.001066 1.000000 34.000000 IGS_029 igs rps2|atpI rps2-atpI 31062 31307 0 246 LSC 0.003440 17 3 300 300 no 0.200000 17 0.705882 0.003441 1.000000 49.200000 atpI gene atpI atpI 31308 32051 1 744 LSC 0.001649 17 0 300 22 no 0.166667 16 0.625000 0.001649 1.000000 33.400000 IGS_030 igs atpI|atpH atpI-atpH 32052 32654 0 603 LSC 0.005353 38 206 300 300 yes 0.450000 34 0.794118 0.005383 0.991708 64.500000 atpH gene atpH atpH 32655 32900 1 246 LSC 0.000407 3 0 127 89 no 0.050000 4 0.750000 0.000407 1.000000 28.100000 IGS_031 igs atpH|atpF atpH-atpF 32901 33346 0 446 LSC 0.006063 29 17 300 300 no 0.383333 32 0.718750 0.005915 1.000000 59.500000 atpF gene atpF atpF 33347 34717 1 1371 LSC 0.002086 47 17 188 300 no 0.500000 36 0.833333 0.002084 1.000000 55.200000 IGS_032 igs atpF|atpA atpF-atpA 34718 34810 0 93 LSC 0.002138 5 2 165 300 no 0.066667 8 0.500000 0.002164 0.989247 42.300000 atpA gene atpA atpA 34811 36334 1 1524 LSC 0.001594 41 0 258 200 no 0.466667 37 0.756757 0.001594 1.000000 52.800000 IGS_033 igs atpA|trnR atpA-trnR 36335 36457 0 123 LSC 0.005742 10 1 300 77 no 0.066667 10 0.400000 0.005745 1.000000 39.500000 trnR tRNA trnR trnR 36458 36529 -1 72 LSC 0.000000 0 0 300 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_034 igs trnR|rps14 trnR-rps14 36530 36907 0 378 LSC 0.010883 38 18 300 226 yes 0.450000 37 0.729730 0.009548 0.984127 66.600000 rps14 gene rps14 rps14 36908 37219 -1 312 LSC 0.002470 8 0 300 300 no 0.050000 9 0.333333 0.002470 1.000000 39.300000 IGS_035 igs rps14|psaB rps14-psaB 37220 37369 0 150 LSC 0.004211 9 1 85 300 no 0.116667 11 0.636364 0.004211 1.000000 37.500000 psaB gene psaB psaB 37370 39574 -1 2205 LSC 0.002255 54 0 235 300 no 0.433333 35 0.742857 0.002255 1.000000 50.700000 IGS_036 igs psaB|psaA psaB-psaA 39575 39599 0 25 LSC 0.007322 1 0 300 300 no 0.000000 2 0.000000 0.007322 1.000000 42.000000 psaA gene psaA psaA 39600 41852 -1 2253 LSC 0.001755 47 0 300 114 no 0.416667 32 0.781250 0.001755 1.000000 43.200000 IGS_037 igs psaA|ycf3 psaA-ycf3 41853 42505 0 653 LSC 0.008593 62 31 105 300 yes 0.916667 57 0.964912 0.008096 0.972435 70.600000 ycf3 gene ycf3 ycf3 42506 44478 -1 1973 LSC 0.002468 75 7 113 210 no 0.600000 45 0.800000 0.002462 0.999493 50.000000 IGS_038 igs ycf3|trnS ycf3-trnS 44479 45086 0 608 LSC 0.005288 48 20 57 109 no 0.516667 39 0.794872 0.005291 1.000000 55.300000 trnS tRNA trnS trnS 45087 45173 1 87 LSC 0.000766 2 0 50 22 no 0.033333 3 0.666667 0.000766 1.000000 24.200000 IGS_039 igs trnS|rps4 trnS-rps4 45174 45457 0 284 LSC 0.006731 19 14 137 8 no 0.350000 28 0.750000 0.006753 0.978873 42.500000 rps4 gene rps4 rps4 45458 46063 -1 606 LSC 0.003091 19 0 89 148 no 0.283333 21 0.809524 0.003091 1.000000 42.300000 IGS_040 igs rps4|trnT rps4-trnT 46064 46363 0 300 LSC 0.003981 24 5 282 259 no 0.266667 21 0.761905 0.003981 1.000000 52.600000 trnT tRNA trnT trnT 46364 46436 -1 73 LSC 0.000000 0 0 151 186 no 0.000000 1 0.000000 0.000000 1.000000 30.100000 IGS_041 igs trnT|tRNA-Leu trnT-tRNA-Leu 46437 47202 0 766 LSC 0.007460 80 104 224 255 yes 0.600000 45 0.800000 0.007346 0.998695 73.200000 tRNA-Leu_part1 tRNA tRNA-Leu tRNA-Leu 47203 47237 1 35 LSC 0.000952 1 0 160 220 no 0.016667 2 0.500000 0.000952 1.000000 35.100000 IGS_042 igs tRNA-Leu|tRNA-Leu tRNA-Leu-tRNA-Leu 47238 47776 0 539 LSC 0.009470 51 58 195 102 no 0.500000 39 0.769231 0.009313 1.000000 63.000000 tRNA-Leu_part2 tRNA tRNA-Leu tRNA-Leu 47777 47826 1 50 LSC 0.001333 2 0 156 52 no 0.033333 3 0.666667 0.001333 1.000000 28.900000 IGS_043 igs tRNA-Leu|trnF tRNA-Leu-trnF 47827 48170 0 344 LSC 0.007420 32 2 206 300 no 0.416667 33 0.757576 0.007444 0.997093 58.000000 trnF tRNA trnF trnF 48171 48243 1 73 LSC 0.000000 0 0 80 231 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 IGS_044 igs trnF|ndhJ trnF-ndhJ 48244 48740 0 497 LSC 0.006313 41 32 153 180 no 0.383333 32 0.718750 0.006369 1.000000 60.800000 ndhJ gene ndhJ ndhJ 48741 49220 -1 480 LSC 0.002199 13 0 130 35 no 0.133333 14 0.571429 0.002199 1.000000 32.000000 IGS_045 igs ndhJ|ndhK ndhJ-ndhK 49221 49325 0 105 LSC 0.005311 8 1 299 300 no 0.116667 10 0.700000 0.005312 1.000000 49.000000 ndhK gene ndhK ndhK 49326 50066 -1 741 LSC 0.002148 23 6 69 300 no 0.266667 21 0.761905 0.002147 1.000000 41.000000 ndhC gene ndhC ndhC 50057 50419 -1 363 LSC 0.001737 8 0 139 100 no 0.066667 8 0.500000 0.001737 1.000000 32.300000 IGS_047 igs ndhC|trnV ndhC-trnV 50420 51272 0 853 LSC 0.006964 71 87 300 300 yes 0.566667 46 0.739130 0.006948 1.000000 70.300000 trnV_part2 tRNA trnV trnV 51273 51307 -1 35 LSC 0.000000 0 0 179 300 no 0.000000 1 0.000000 0.000000 1.000000 32.200000 trnV_part1 tRNA trnV trnV 51906 51944 -1 39 LSC 0.000000 0 0 300 42 no 0.000000 1 0.000000 0.000000 1.000000 21.900000 IGS_050 igs trnV|trnM trnV-trnM 51945 52124 0 180 LSC 0.007793 16 0 300 300 no 0.183333 19 0.578947 0.007793 1.000000 51.800000 trnM tRNA trnM trnM 52125 52197 1 73 LSC 0.000000 0 0 137 300 no 0.000000 1 0.000000 0.000000 1.000000 29.000000 IGS_051 igs trnM|atpE trnM-atpE 52198 52313 0 116 LSC 0.001963 3 2 210 300 no 0.083333 9 0.555556 0.001976 0.991379 41.300000 atpE gene atpE atpE 52314 52727 -1 414 LSC 0.001818 8 0 300 160 no 0.050000 6 0.500000 0.001818 1.000000 37.300000 atpB gene atpB atpB 52724 54220 -1 1497 LSC 0.003556 39 0 300 300 no 0.383333 33 0.696970 0.003556 1.000000 52.000000 IGS_053 igs atpB|rbcL atpB-rbcL 54221 55006 0 786 LSC 0.004360 46 23 7 39 no 0.516667 36 0.861111 0.004358 1.000000 48.100000 rbcL gene rbcL rbcL 55007 56440 1 1434 LSC 0.003692 49 6 91 139 no 0.466667 37 0.756757 0.003686 1.000000 47.000000 IGS_054 igs rbcL|psaI rbcL-psaI 56441 57424 0 984 LSC 0.010471 105 216 210 214 yes 0.900000 56 0.964286 0.009082 0.993902 79.900000 psaI gene psaI psaI 57425 57535 1 111 LSC 0.000300 1 0 161 103 no 0.016667 2 0.500000 0.000300 1.000000 28.000000 IGS_055 igs psaI|ycf4 psaI-ycf4 57536 57844 0 309 LSC 0.008250 33 2 272 96 no 0.416667 32 0.781250 0.008248 1.000000 51.000000 ycf4 gene ycf4 ycf4 57845 58402 1 558 LSC 0.003080 19 0 169 131 no 0.183333 18 0.611111 0.003080 1.000000 43.000000 IGS_056 igs ycf4|cemA ycf4-cemA 58403 58623 0 221 LSC 0.007076 17 7 300 148 no 0.216667 20 0.650000 0.007061 0.972851 49.500000 cemA gene cemA cemA 58624 59313 1 690 LSC 0.003052 25 0 69 81 no 0.283333 24 0.708333 0.003052 1.000000 41.400000 IGS_057 igs cemA|petA cemA-petA 59314 59537 0 224 LSC 0.004449 12 5 36 216 no 0.083333 12 0.416667 0.004443 1.000000 34.500000 petA gene petA petA 59538 60500 1 963 LSC 0.001496 23 0 72 60 no 0.283333 22 0.772727 0.001496 1.000000 38.500000 IGS_058 igs petA|psbJ petA-psbJ 60501 61325 0 825 LSC 0.009465 77 165 300 33 yes 0.700000 49 0.857143 0.009489 1.000000 62.600000 psbJ gene psbJ psbJ 61326 61448 -1 123 LSC 0.010960 6 0 171 300 no 0.033333 6 0.333333 0.010960 1.000000 43.200000 IGS_059 igs psbJ|psbL psbJ-psbL 61449 61573 0 125 LSC 0.000800 3 0 48 300 no 0.050000 4 0.750000 0.000800 1.000000 26.600000 psbL gene psbL psbL 61574 61690 -1 117 LSC 0.000000 0 0 173 300 no 0.000000 1 0.000000 0.000000 1.000000 31.700000 IGS_060 igs psbL|psbF psbL-psbF 61691 61712 0 22 LSC 0.003030 2 0 290 300 no 0.033333 3 0.666667 0.003030 1.000000 47.100000 psbF gene psbF psbF 61713 61832 -1 120 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_061 igs psbF|psbE psbF-psbE 61833 61842 0 10 LSC 0.027966 2 0 300 300 no 0.000000 3 0.000000 NA 1.000000 58.800000 psbE gene psbE psbE 61843 62094 -1 252 LSC 0.000780 4 0 300 119 no 0.050000 5 0.600000 0.000780 1.000000 30.900000 IGS_062 igs psbE|petL psbE-petL 62095 63381 0 1287 LSC 0.005164 97 322 300 55 no 0.783333 53 0.886792 0.005180 0.996115 61.500000 petL gene petL petL 63382 63477 1 96 LSC 0.003790 1 0 285 300 no 0.000000 2 0.000000 0.003790 1.000000 36.800000 IGS_063 igs petL|petG petL-petG 63478 63650 0 173 LSC 0.001515 5 1 40 300 no 0.050000 6 0.500000 0.001517 1.000000 27.700000 petG gene petG petG 63651 63764 1 114 LSC 0.000292 1 0 213 296 no 0.016667 2 0.500000 0.000292 1.000000 35.300000 IGS_064 igs petG|trnW petG-trnW 63765 63886 0 122 LSC 0.011202 14 0 300 174 no 0.083333 7 0.714286 0.011202 1.000000 50.900000 trnW tRNA trnW trnW 63887 63960 -1 74 LSC 0.000450 1 0 300 100 no 0.016667 2 0.500000 0.000450 1.000000 28.500000 IGS_065 igs trnW|trnP trnW-trnP 63961 64099 0 139 LSC 0.008304 16 1 300 143 no 0.150000 14 0.642857 0.008316 1.000000 49.400000 trnP tRNA trnP trnP 64100 64174 -1 75 LSC 0.000000 0 0 38 68 no 0.000000 1 0.000000 0.000000 1.000000 21.600000 IGS_066 igs trnP|psaJ trnP-psaJ 64175 64517 0 343 LSC 0.006882 25 53 113 184 no 0.366667 29 0.758621 0.006635 1.000000 53.000000 psaJ gene psaJ psaJ 64518 64646 1 129 LSC 0.000775 3 0 123 55 no 0.050000 4 0.750000 0.000775 1.000000 27.100000 IGS_067 igs psaJ|rpl33 psaJ-rpl33 64647 65093 0 447 LSC 0.004494 26 14 252 300 no 0.350000 29 0.724138 0.004522 0.997763 56.400000 rpl33 gene rpl33 rpl33 65094 65294 1 201 LSC 0.001802 7 0 221 178 no 0.050000 8 0.375000 0.001802 1.000000 38.200000 IGS_068 igs rpl33|rps18 rpl33-rps18 65295 65560 0 266 LSC 0.006574 24 1 300 192 no 0.300000 28 0.642857 0.006584 1.000000 53.500000 rps18 gene rps18 rps18 65561 66073 1 513 LSC 0.003056 20 26 87 201 no 0.266667 21 0.761905 0.003059 1.000000 47.100000 IGS_069 igs rps18|rpl20 rps18-rpl20 66074 66229 0 156 LSC 0.003151 10 8 126 45 no 0.116667 10 0.700000 0.003155 1.000000 40.000000 rpl20 gene rpl20 rpl20 66230 66589 -1 360 LSC 0.002613 9 0 282 99 no 0.100000 10 0.600000 0.002613 1.000000 33.600000 IGS_070 igs rpl20|rps12 rpl20-rps12 66590 67298 0 709 LSC 0.004980 38 53 278 104 no 0.350000 31 0.677419 0.004964 0.985896 53.900000 rps12_part1 gene rps12 rps12 67299 67412 -1 114 LSC 0.002939 4 0 44 122 no 0.050000 5 0.600000 0.002939 1.000000 28.700000 IGS_071 igs rps12|clpP rps12-clpP 67413 67551 0 139 LSC 0.008206 14 1 9 300 no 0.166667 17 0.588235 0.008212 1.000000 39.600000 clpP gene clpP clpP 67552 68202 -1 651 LSC 0.001309 16 0 16 300 no 0.150000 16 0.562500 0.001309 1.000000 32.700000 IGS_072 igs clpP|psbB clpP-psbB 68203 68699 0 497 LSC 0.002873 25 1 300 300 no 0.300000 23 0.782609 0.002873 1.000000 51.300000 psbB gene psbB psbB 68700 70226 1 1527 LSC 0.001066 31 0 300 295 no 0.333333 24 0.833333 0.001066 1.000000 49.200000 IGS_073 igs psbB|psbT psbB-psbT 70227 70389 0 163 LSC 0.002562 6 32 300 132 no 0.066667 8 0.500000 0.002554 1.000000 41.700000 psbT gene psbT psbT 70390 70497 1 108 LSC 0.001214 2 0 300 24 no 0.000000 3 0.000000 0.001214 1.000000 23.400000 IGS_074 igs psbT|psbN psbT-psbN 70498 70545 0 48 LSC 0.037194 6 0 300 300 yes 0.033333 4 0.500000 0.037194 1.000000 63.600000 psbN gene psbN psbN 70546 70677 -1 132 LSC 0.001250 3 0 19 216 no 0.050000 5 0.600000 0.001250 1.000000 24.500000 IGS_075 igs psbN|petB psbN-petB 70678 71881 0 1204 LSC 0.003487 57 11 151 300 no 0.616667 43 0.860465 0.003463 0.999169 56.500000 petB gene petB petB 71882 72580 1 699 LSC 0.000803 12 1 264 252 no 0.116667 12 0.583333 0.000804 1.000000 44.900000 IGS_076 igs petB|petD petB-petD 72581 72768 0 188 LSC 0.004916 13 1 300 64 no 0.166667 14 0.714286 0.004917 1.000000 38.200000 petD gene petD petD 72769 73993 1 1225 LSC 0.004090 54 9 300 300 no 0.516667 39 0.794872 0.004093 0.999184 57.900000 IGS_077 igs petD|rpoA petD-rpoA 73994 74200 0 207 LSC 0.003461 13 6 300 300 no 0.133333 13 0.615385 0.003472 1.000000 49.300000 rpoA gene rpoA rpoA 74201 75222 -1 1022 LSC 0.003041 55 2 300 27 no 0.516667 37 0.837838 0.003041 0.998043 45.000000 IGS_078 igs rpoA|rps11 rpoA-rps11 75223 75286 0 64 LSC 0.007248 4 0 300 300 no 0.050000 5 0.600000 0.007248 1.000000 45.800000 rps11 gene rps11 rps11 75287 75718 -1 432 LSC 0.002609 18 0 36 161 no 0.216667 18 0.722222 0.002609 1.000000 34.600000 IGS_079 igs rps11|rpl36 rps11-rpl36 75719 75897 0 179 LSC 0.007054 24 10 300 225 no 0.266667 23 0.695652 0.007099 0.994413 60.500000 rpl36 gene rpl36 rpl36 75898 76011 -1 114 LSC 0.001432 3 0 17 111 no 0.033333 4 0.500000 0.001432 1.000000 24.600000 IGS_080 igs rpl36|infA rpl36-infA 76012 76116 0 105 LSC 0.003756 8 9 131 6 no 0.133333 11 0.727273 0.003777 1.000000 39.100000 infA gene infA infA 76117 76458 -1 342 LSC 0.005554 17 54 236 43 no 0.250000 22 0.681818 0.005525 1.000000 42.400000 IGS_081 igs infA|rps8 infA-rps8 76459 76568 0 110 LSC 0.022886 22 0 17 300 no 0.150000 13 0.692308 0.022886 1.000000 45.600000 rps8 gene rps8 rps8 76569 76979 -1 411 LSC 0.001508 13 0 57 63 no 0.150000 13 0.692308 0.001508 1.000000 32.800000 IGS_082 igs rps8|rpl14 rps8-rpl14 76980 77120 0 141 LSC 0.008018 12 1 300 113 no 0.150000 14 0.642857 0.008021 1.000000 45.200000 rpl14 gene rpl14 rpl14 77121 77492 -1 372 LSC 0.003157 12 0 77 51 no 0.133333 13 0.615385 0.003157 1.000000 32.000000 IGS_083 igs rpl14|rpl16 rpl14-rpl16 77493 77603 0 111 LSC 0.006647 11 1 110 63 no 0.116667 13 0.538462 0.006638 1.000000 42.200000 rpl16 gene rpl16 rpl16 77604 79053 -1 1450 LSC 0.006988 110 259 59 300 yes 0.766667 51 0.901961 0.005805 0.981379 61.700000 IGS_084 igs rpl16|rps3 rpl16-rps3 79054 79195 0 142 LSC 0.004906 8 3 34 300 no 0.133333 13 0.615385 0.004908 1.000000 35.700000 rps3 gene rps3 rps3 79196 79915 -1 720 LSC 0.002491 28 45 176 300 no 0.316667 24 0.791667 0.002482 1.000000 56.300000 IGS_085 igs rps3|rpl22 rps3-rpl22 79916 79970 0 55 LSC 0.001757 1 1 219 300 no 0.000000 3 0.000000 0.001760 1.000000 39.000000 rpl22 gene rpl22 rpl22 79971 80420 -1 450 LSC 0.004069 29 0 274 56 no 0.283333 24 0.708333 0.004069 1.000000 41.300000 IGS_086 igs rpl22|rps19 rpl22-rps19 80421 80504 0 84 IRb 0.015715 17 6 55 287 no 0.166667 16 0.625000 0.015663 1.000000 51.700000 rps19 gene rps19 rps19 80505 80786 -1 282 IRb 0.000591 5 0 27 5 no 0.083333 6 0.833333 0.000591 1.000000 23.200000 IGS_087 igs rps19|trnH rps19-trnH 80787 80917 0 131 IRb 0.007444 7 0 300 78 no 0.066667 8 0.500000 0.007444 1.000000 35.900000 trnH tRNA trnH trnH 80918 80992 1 75 IRb 0.000000 0 0 34 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_088 igs trnH|rpl2 trnH-rpl2 80993 81047 0 55 IRb 0.007807 2 0 109 300 no 0.000000 3 0.000000 0.007807 1.000000 35.000000 rpl2 gene rpl2 rpl2 81048 82532 -1 1485 IRb 0.000200 7 1 51 300 no 0.066667 8 0.500000 0.000201 1.000000 30.800000 IGS_089 igs rpl2|rpl23 rpl2-rpl23 82533 82550 0 18 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 82551 82832 -1 282 IRb 0.000693 3 0 300 300 no 0.033333 4 0.500000 0.000693 1.000000 36.000000 IGS_090 igs rpl23|trnI rpl23-trnI 82833 83006 0 174 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_091 igs trnI|trnL trnI-trnL 83080 84781 0 1702 IRb 0.001036 20 10 300 300 no 0.216667 18 0.722222 0.001036 1.000000 46.300000 trnL tRNA trnL trnL 84782 84862 -1 81 IRb 0.000000 0 0 20 300 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_092 igs trnL|ndhB trnL-ndhB 84863 85444 0 582 IRb 0.000681 9 17 101 300 no 0.116667 11 0.636364 0.000687 1.000000 40.200000 ndhB gene ndhB ndhB 85445 87689 -1 2245 IRb 0.000324 10 0 300 300 no 0.133333 11 0.727273 0.000324 1.000000 41.700000 IGS_093 igs ndhB|rps7 ndhB-rps7 87690 87988 0 299 IRb 0.000227 2 8 300 300 no 0.033333 5 0.400000 0.000222 1.000000 38.600000 rps7 gene rps7 rps7 87989 88459 -1 471 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_094 igs rps7|rps12 rps7-rps12 88460 88516 0 57 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps12_part2 gene rps12 rps12 88517 89299 -1 783 IRb 0.000085 2 0 300 300 no 0.033333 3 0.666667 0.000085 1.000000 41.000000 IGS_095 igs rps12|trnV rps12-trnV 89300 90969 0 1670 IRb 0.000621 17 1 300 300 no 0.216667 17 0.764706 0.000621 1.000000 45.300000 IGS_096 igs trnV|rrn16 trnV-rrn16 91042 91270 0 229 IRb 0.000291 2 0 300 300 no 0.033333 3 0.666667 0.000291 1.000000 35.600000 rrn16 rRNA rrn16 rrn16 91271 92762 1 1492 IRb 0.000000 0 0 300 289 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_097 igs rrn16|trnI rrn16-trnI 92763 93070 0 308 IRb 0.004087 4 5 300 273 no 0.016667 6 0.166667 0.004103 0.996753 39.600000 trnI_part1 tRNA trnI trnI 93071 93107 1 37 IRb 0.000000 0 0 16 236 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 trnI_part2 tRNA trnI trnI 93914 93948 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_100 igs trnI|trnA trnI-trnA 93949 94013 0 65 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 94014 94051 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 94863 94897 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_103 igs trnA|rrn23 trnA-rrn23 94898 95042 0 145 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23 rRNA rrn23 rrn23 95043 97930 1 2888 IRb 0.000378 6 0 300 154 no 0.033333 6 0.333333 0.000378 1.000000 34.700000 IGS_104 igs rrn23|rrn4.5 rrn23-rrn4.5 97931 98024 0 94 IRb 0.000000 0 0 300 60 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 rrn4.5 rRNA rrn4.5 rrn4.5 98025 98119 1 95 IRb 0.003830 1 0 300 300 no 0.000000 2 0.000000 0.003830 1.000000 36.800000 IGS_105 igs rrn4.5|rrn5 rrn4.5-rrn5 98120 98346 0 227 IRb 0.000294 2 0 34 300 no 0.033333 3 0.666667 0.000294 1.000000 23.200000 rrn5 rRNA rrn5 rrn5 98347 98467 1 121 IRb 0.000000 0 0 261 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_106 igs rrn5|trnR rrn5-trnR 98468 98696 0 229 IRb 0.001552 7 0 300 300 no 0.083333 7 0.714286 0.001552 1.000000 39.800000 trnR tRNA trnR trnR 98697 98770 1 74 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_107 igs trnR|trnN trnR-trnN 98771 99033 0 263 IRb 0.000511 4 12 300 300 no 0.083333 7 0.714286 0.000503 1.000000 43.100000 trnN tRNA trnN trnN 99034 99105 -1 72 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_108 igs trnN|rps15 trnN-rps15 99106 100684 0 1579 IRb 0.001477 34 86 300 300 no 0.366667 32 0.687500 0.001482 1.000000 56.300000 rps15 gene rps15 rps15 100685 100921 1 237 IRb 0.000700 3 237 300 300 no 0.050000 5 0.600000 0.000700 1.000000 42.300000 IGS_109 igs rps15|ndhF rps15-ndhF 100922 101370 0 449 IRb 0.016766 68 396 300 39 no 0.666667 48 0.833333 0.011739 0.964365 60.800000 ndhF gene ndhF ndhF 101371 103590 -1 2220 SSC 0.004098 123 0 1 47 yes 0.783333 53 0.886792 0.004098 1.000000 47.000000 IGS_110 igs ndhF|trnL ndhF-trnL 103591 105281 0 1691 SSC 0.013069 203 746 170 300 yes 0.883333 56 0.946429 0.012905 0.999409 78.100000 trnL tRNA trnL trnL 105282 105361 1 80 SSC 0.000000 0 0 36 300 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_111 igs trnL|ccsA trnL-ccsA 105362 105438 0 77 SSC 0.004080 3 0 116 300 no 0.000000 4 0.000000 0.004080 1.000000 34.200000 ccsA gene ccsA ccsA 105439 106398 1 960 SSC 0.005104 57 0 193 300 no 0.566667 41 0.829268 0.005104 1.000000 59.800000 IGS_112 igs ccsA|ndhD ccsA-ndhD 106399 106578 0 180 SSC 0.004801 15 81 117 255 no 0.250000 25 0.600000 0.004829 1.000000 50.600000 ndhD gene ndhD ndhD 106579 108081 -1 1503 SSC 0.003119 49 0 297 300 no 0.466667 37 0.756757 0.003119 1.000000 54.200000 IGS_113 igs ndhD|psaC ndhD-psaC 108082 108200 0 119 SSC 0.004748 7 1 300 300 no 0.050000 7 0.428571 0.004756 1.000000 45.200000 psaC gene psaC psaC 108201 108446 -1 246 SSC 0.000928 4 0 300 65 no 0.050000 5 0.600000 0.000928 1.000000 27.000000 IGS_114 igs psaC|ndhE psaC-ndhE 108447 108911 0 465 SSC 0.008394 59 46 300 300 yes 0.516667 41 0.756098 0.008436 0.995699 69.200000 ndhE gene ndhE ndhE 108912 109217 -1 306 SSC 0.001158 6 0 153 33 no 0.066667 7 0.571429 0.001158 1.000000 25.600000 IGS_115 igs ndhE|ndhG ndhE-ndhG 109218 109428 0 211 SSC 0.007738 20 18 300 300 no 0.266667 22 0.727273 0.007753 1.000000 60.300000 ndhG gene ndhG ndhG 109429 109959 -1 531 SSC 0.003346 23 0 60 12 no 0.283333 24 0.708333 0.003346 1.000000 36.700000 IGS_116 igs ndhG|ndhI ndhG-ndhI 109960 110225 0 266 SSC 0.007744 24 72 164 150 no 0.483333 36 0.805556 0.007763 0.992481 59.600000 ndhI gene ndhI ndhI 110226 110768 -1 543 SSC 0.002486 19 3 13 3 no 0.200000 18 0.666667 0.002486 1.000000 34.000000 IGS_117 igs ndhI|ndhA ndhI-ndhA 110769 110861 0 93 SSC 0.004149 2 0 125 178 no 0.000000 3 0.000000 0.004149 1.000000 32.700000 ndhA gene ndhA ndhA 110862 112949 -1 2088 SSC 0.004254 134 135 89 300 no 0.783333 52 0.903846 0.004245 1.000000 61.300000 IGS_118 igs ndhA|ndhH ndhA-ndhH 112950 112950 0 1 SSC 0.000000 0 0 278 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 ndhH gene ndhH ndhH 112951 114132 -1 1182 SSC 0.002399 45 0 279 300 no 0.466667 35 0.800000 0.002399 1.000000 54.600000 IGS_119 igs ndhH|rps15 ndhH-rps15 114133 114269 0 137 IRa 0.004331 13 19 239 300 no 0.200000 15 0.800000 0.004359 1.000000 57.000000 rps15 gene rps15 rps15 114270 114506 -1 237 IRa 0.000689 3 0 300 300 no 0.033333 4 0.500000 0.000689 1.000000 36.300000 IGS_120 igs rps15|trnN rps15-trnN 114507 116085 0 1579 IRa 0.001477 34 52 300 300 no 0.350000 31 0.677419 0.001481 1.000000 53.800000 trnN tRNA trnN trnN 116086 116157 1 72 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_121 igs trnN|trnR trnN-trnR 116158 116420 0 263 IRa 0.000511 4 12 300 300 no 0.083333 7 0.714286 0.000503 1.000000 43.100000 trnR tRNA trnR trnR 116421 116497 -1 77 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_122 igs trnR|rrn5 trnR-rrn5 116498 116723 0 226 IRa 0.001572 7 0 300 300 no 0.083333 7 0.714286 0.001572 1.000000 39.900000 rrn5 rRNA rrn5 rrn5 116724 116844 -1 121 IRa 0.000000 0 0 300 261 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_123 igs rrn5|rrn4.5 rrn5-rrn4.5 116845 117071 0 227 IRa 0.000294 2 0 300 34 no 0.033333 3 0.666667 0.000294 1.000000 23.200000 rrn4.5 rRNA rrn4.5 rrn4.5 117072 117166 -1 95 IRa 0.003830 1 0 300 300 no 0.000000 2 0.000000 0.003830 1.000000 36.800000 IGS_124 igs rrn4.5|rrn23 rrn4.5-rrn23 117167 117260 0 94 IRa 0.000000 0 0 60 300 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 rrn23 rRNA rrn23 rrn23 117261 120148 -1 2888 IRa 0.000378 6 0 154 300 no 0.033333 6 0.333333 0.000378 1.000000 34.700000 IGS_125 igs rrn23|trnA rrn23-trnA 120149 120293 0 145 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 120294 120328 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 121140 121177 -1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_128 igs trnA|trnI trnA-trnI 121178 121242 0 65 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 121243 121277 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part1 tRNA trnI trnI 122084 122120 -1 37 IRa 0.000000 0 0 236 16 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_131 igs trnI|rrn16 trnI-rrn16 122121 122428 0 308 IRa 0.004087 4 5 273 300 no 0.016667 6 0.166667 0.004103 0.996753 39.600000 rrn16 rRNA rrn16 rrn16 122429 123919 -1 1491 IRa 0.000000 0 0 289 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_132 igs rrn16|trnV rrn16-trnV 123920 124149 0 230 IRa 0.000290 2 0 300 300 no 0.033333 3 0.666667 0.000290 1.000000 35.600000 IGS_133 igs trnV|rps12 trnV-rps12 124222 125879 0 1658 IRa 0.000625 17 1 300 300 no 0.216667 17 0.764706 0.000625 1.000000 45.400000 rps12_part2 gene rps12 rps12 125880 126674 1 795 IRa 0.000084 2 0 300 300 no 0.033333 3 0.666667 0.000084 1.000000 41.000000 IGS_134 igs rps12|rps7 rps12-rps7 126675 126731 0 57 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 126732 127202 1 471 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_135 igs rps7|ndhB rps7-ndhB 127203 127501 0 299 IRa 0.000223 2 7 300 300 no 0.033333 5 0.400000 0.000225 1.000000 38.200000 ndhB gene ndhB ndhB 127502 129746 1 2245 IRa 0.000324 10 0 300 300 no 0.133333 11 0.727273 0.000324 1.000000 41.700000 IGS_136 igs ndhB|trnL ndhB-trnL 129747 130328 0 582 IRa 0.000681 9 17 300 101 no 0.116667 11 0.636364 0.000687 1.000000 40.200000 trnL tRNA trnL trnL 130329 130409 1 81 IRa 0.000000 0 0 300 20 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_137 igs trnL|trnI trnL-trnI 130410 132111 0 1702 IRa 0.001036 20 10 300 300 no 0.216667 18 0.722222 0.001036 1.000000 46.300000 IGS_138 igs trnI|rpl23 trnI-rpl23 132185 132358 0 174 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl23 gene rpl23 rpl23 132359 132640 1 282 IRa 0.000693 3 0 300 300 no 0.033333 4 0.500000 0.000693 1.000000 36.000000 IGS_139 igs rpl23|rpl2 rpl23-rpl2 132641 132658 0 18 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl2 gene rpl2 rpl2 132659 134143 1 1485 IRa 0.000200 7 1 300 51 no 0.066667 8 0.500000 0.000201 1.000000 30.800000 IGS_140 igs rpl2|trnH rpl2-trnH 134144 134195 0 52 IRa 0.008257 2 0 300 112 no 0.000000 3 0.000000 0.008257 1.000000 35.700000 trnH tRNA trnH trnH 134196 134273 -1 78 IRa 0.000000 0 0 0 34 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_141 igs trnH|rps19 trnH-rps19 134274 134404 0 131 IRa 0.007444 7 0 78 300 no 0.066667 8 0.500000 0.007444 1.000000 35.900000 rps19 gene rps19 rps19 134405 134686 1 282 IRa 0.000591 5 0 5 27 no 0.083333 6 0.833333 0.000591 1.000000 23.200000 IGS_142 igs rps19|psbA rps19-psbA 134687 84 0 128 LSC 0.015526 12 14 287 42 no 0.216667 19 0.684211 0.015575 1.000000 50.800000