feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH tRNA trnH trnH 3 76 -1 74 LSC 0.013514 1 0 55 72 no 1.000000 2 1.000000 NA 1.000000 49.400000 IGS_001 igs trnH|psbA trnH-psbA 77 525 0 449 LSC 0.006682 3 0 43 87 no 1.000000 2 1.000000 NA 1.000000 47.700000 psbA gene psbA psbA 526 1587 -1 1062 LSC 0.009416 10 0 65 26 no 1.000000 2 1.000000 NA 1.000000 51.100000 IGS_002 igs psbA|trnK psbA-trnK 1588 1852 0 265 LSC 0.023166 6 6 36 51 no 1.000000 2 1.000000 NA 0.977358 55.600000 trnK_part2 tRNA trnK trnK 1853 1887 -1 35 LSC 0.000000 0 0 10 16 no 0.000000 1 0.000000 NA 1.000000 19.500000 matK gene matK matK 2169 3680 -1 1512 LSC 0.010688 16 15 23 170 no 1.000000 2 1.000000 NA 0.990079 52.500000 IGS_005 igs matK|trnK matK-trnK 3681 4398 0 718 LSC 0.011142 8 0 205 69 no 1.000000 2 1.000000 NA 1.000000 55.300000 trnK_part1 tRNA trnK trnK 4399 4435 -1 37 LSC 0.000000 0 0 34 32 no 0.000000 1 0.000000 NA 1.000000 21.100000 IGS_006 igs trnK|rps16 trnK-rps16 4436 5296 0 861 LSC 0.017544 15 6 71 118 yes 1.000000 2 1.000000 NA 0.993031 59.800000 rps16 gene rps16 rps16 5297 6407 -1 1111 LSC 0.007201 8 0 38 70 no 1.000000 2 1.000000 NA 1.000000 50.700000 IGS_007 igs rps16|trnQ rps16-trnQ 6408 7767 0 1360 LSC 0.014804 20 9 297 179 yes 1.000000 2 1.000000 NA 0.993382 66.300000 trnQ tRNA trnQ trnQ 7768 7839 -1 72 LSC 0.000000 0 0 189 107 no 0.000000 1 0.000000 NA 1.000000 26.800000 IGS_008 igs trnQ|psbK trnQ-psbK 7840 8192 0 353 LSC 0.008499 3 0 261 42 no 1.000000 2 1.000000 NA 1.000000 46.600000 psbK gene psbK psbK 8193 8378 1 186 LSC 0.005376 1 0 133 14 no 1.000000 2 1.000000 NA 1.000000 41.600000 IGS_009 igs psbK|psbI psbK-psbI 8379 8766 0 388 LSC 0.013661 5 22 143 98 no 1.000000 2 1.000000 NA 0.943299 59.100000 psbI gene psbI psbI 8767 8877 1 111 LSC 0.009009 1 0 24 60 no 1.000000 2 1.000000 NA 1.000000 44.500000 IGS_010 igs psbI|trnS psbI-trnS 8878 9020 0 143 LSC 0.013986 2 0 12 300 no 1.000000 2 1.000000 NA 1.000000 46.400000 trnS tRNA trnS trnS 9021 9107 1 87 LSC 0.000000 0 0 1 261 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_011 igs trnS|trnG trnS-trnG 9108 9867 0 760 LSC 0.014550 11 4 88 43 yes 1.000000 2 1.000000 NA 0.994737 55.800000 trnG_part1 tRNA trnG trnG 9868 9890 1 23 LSC 0.000000 0 0 7 20 no 0.000000 1 0.000000 NA 1.000000 19.300000 trnG_part2 tRNA trnG trnG 10611 10659 1 49 LSC 0.000000 0 0 87 21 no 0.000000 1 0.000000 NA 1.000000 20.300000 IGS_014 igs trnG|trnR trnG-trnR 10660 10826 0 167 LSC 0.035928 6 0 136 26 no 1.000000 2 1.000000 NA 1.000000 60.100000 trnR tRNA trnR trnR 10827 10898 1 72 LSC 0.013889 1 0 15 39 no 1.000000 2 1.000000 NA 1.000000 46.600000 IGS_015 igs trnR|atpA trnR-atpA 10899 11090 0 192 LSC 0.010526 2 2 45 144 no 1.000000 2 1.000000 NA 0.989583 47.900000 atpA gene atpA atpA 11091 12608 -1 1518 LSC 0.005270 8 0 143 266 no 1.000000 2 1.000000 NA 1.000000 57.500000 IGS_016 igs atpA|atpF atpA-atpF 12609 12666 0 58 LSC 0.000000 0 3 75 208 no 1.000000 2 1.000000 NA 0.948276 47.900000 atpF gene atpF atpF 12667 13989 -1 1323 LSC 0.008333 11 3 133 130 no 1.000000 2 1.000000 NA 0.997732 58.500000 IGS_017 igs atpF|atpH atpF-atpH 13990 14418 0 429 LSC 0.009434 4 5 10 141 no 1.000000 2 1.000000 NA 0.988345 47.500000 atpH gene atpH atpH 14419 14664 -1 246 LSC 0.004065 1 0 54 13 no 1.000000 2 1.000000 NA 1.000000 40.800000 IGS_018 igs atpH|atpI atpH-atpI 14665 15864 0 1200 LSC 0.006706 8 7 104 140 no 1.000000 2 1.000000 NA 0.994167 56.000000 atpI gene atpI atpI 15865 16608 -1 744 LSC 0.001344 1 0 15 20 no 1.000000 2 1.000000 NA 1.000000 45.600000 IGS_019 igs atpI|rps2 atpI-rps2 16609 16837 0 229 LSC 0.008734 2 0 300 197 no 1.000000 2 1.000000 NA 1.000000 57.300000 rps2 gene rps2 rps2 16838 17548 -1 711 LSC 0.007032 5 0 94 214 no 1.000000 2 1.000000 NA 1.000000 54.800000 IGS_020 igs rps2|rpoC2 rps2-rpoC2 17549 17746 0 198 LSC 0.000000 0 0 24 16 no 0.000000 1 0.000000 NA 1.000000 20.000000 rpoC2 gene rpoC2 rpoC2 17747 21940 -1 4194 LSC 0.006438 27 0 222 105 no 1.000000 2 1.000000 NA 1.000000 50.300000 IGS_021 igs rpoC2|rpoC1 rpoC2-rpoC1 21941 22123 0 183 LSC 0.010929 2 0 300 254 no 1.000000 2 1.000000 NA 1.000000 58.800000 rpoC1 gene rpoC1 rpoC1 22124 24932 -1 2809 LSC 0.003919 11 2 54 300 no 1.000000 2 1.000000 NA 0.999288 47.400000 IGS_022 igs rpoC1|rpoB rpoC1-rpoB 24933 24958 0 26 LSC 0.000000 0 0 112 300 no 0.000000 1 0.000000 NA 1.000000 27.200000 rpoB gene rpoB rpoB 24959 28171 -1 3213 LSC 0.004980 16 0 138 95 no 1.000000 2 1.000000 NA 1.000000 50.300000 IGS_023 igs rpoB|trnC rpoB-trnC 28172 29138 0 967 LSC 0.010341 10 0 251 210 yes 1.000000 2 1.000000 NA 1.000000 64.700000 trnC tRNA trnC trnC 29139 29209 1 71 LSC 0.000000 0 0 28 139 no 0.000000 1 0.000000 NA 1.000000 20.900000 IGS_024 igs trnC|petN trnC-petN 29210 29932 0 723 LSC 0.011065 8 0 99 207 no 1.000000 2 1.000000 NA 1.000000 57.500000 petN gene petN petN 29933 30022 1 90 LSC 0.000000 0 0 20 117 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_025 igs petN|psbM petN-psbM 30023 31119 0 1097 LSC 0.012999 14 20 110 118 no 1.000000 2 1.000000 NA 0.981768 61.200000 psbM gene psbM psbM 31120 31224 -1 105 LSC 0.000000 0 0 16 13 no 0.000000 1 0.000000 NA 1.000000 19.700000 IGS_026 igs psbM|trnD psbM-trnD 31225 31771 0 547 LSC 0.009174 5 2 121 121 no 1.000000 2 1.000000 NA 0.996344 57.300000 trnD tRNA trnD trnD 31772 31845 -1 74 LSC 0.000000 0 0 63 47 no 0.000000 1 0.000000 NA 1.000000 22.300000 IGS_027 igs trnD|trnY trnD-trnY 31846 32323 0 478 LSC 0.015385 7 23 137 88 no 1.000000 2 1.000000 NA 0.951883 61.200000 trnY tRNA trnY trnY 32324 32407 -1 84 LSC 0.000000 0 0 36 4 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_028 igs trnY|trnE trnY-trnE 32408 32466 0 59 LSC 0.016949 1 0 120 160 no 1.000000 2 1.000000 NA 1.000000 56.200000 trnE tRNA trnE trnE 32467 32539 -1 73 LSC 0.000000 0 0 54 87 no 0.000000 1 0.000000 NA 1.000000 22.800000 IGS_029 igs trnE|trnT trnE-trnT 32540 33305 0 766 LSC 0.007895 6 6 127 116 no 1.000000 2 1.000000 NA 0.992167 57.700000 trnT tRNA trnT trnT 33306 33377 1 72 LSC 0.000000 0 0 183 44 no 0.000000 1 0.000000 NA 1.000000 22.100000 IGS_030 igs trnT|psbD trnT-psbD 33378 34620 0 1243 LSC 0.018504 23 0 255 101 yes 1.000000 2 1.000000 NA 1.000000 62.000000 psbD gene psbD psbD 34621 35682 1 1062 LSC 0.003766 4 0 47 39 no 1.000000 2 1.000000 NA 1.000000 48.800000 psbC gene psbC psbC 35630 37051 1 1422 LSC 0.004923 7 0 300 237 yes 1.000000 2 1.000000 NA 1.000000 61.600000 IGS_032 igs psbC|psbZ psbC-psbZ 37052 37733 0 682 LSC 0.001473 1 3 246 300 no 1.000000 2 1.000000 NA 0.995601 60.000000 psbZ gene psbZ psbZ 37734 37922 1 189 LSC 0.000000 0 0 300 254 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_033 igs psbZ|trnG psbZ-trnG 37923 38487 0 565 LSC 0.003663 2 19 300 74 no 1.000000 2 1.000000 NA 0.966372 53.900000 IGS_034 igs trnG|trnfM trnG-trnfM 38559 38726 0 168 LSC 0.011905 2 0 115 183 no 1.000000 2 1.000000 NA 1.000000 53.000000 trnfM tRNA trnfM trnfM 38727 38800 -1 74 LSC 0.000000 0 0 10 109 no 0.000000 1 0.000000 NA 1.000000 19.500000 IGS_035 igs trnfM|rps14 trnfM-rps14 38801 38962 0 162 LSC 0.012346 2 0 84 263 no 1.000000 2 1.000000 NA 1.000000 50.900000 rps14 gene rps14 rps14 38963 39265 -1 303 LSC 0.003300 1 0 25 65 no 1.000000 2 1.000000 NA 1.000000 41.300000 IGS_036 igs rps14|psaB rps14-psaB 39266 39408 0 143 LSC 0.013986 2 0 39 12 no 1.000000 2 1.000000 NA 1.000000 46.400000 psaB gene psaB psaB 39409 41613 -1 2205 LSC 0.002721 6 0 47 300 no 1.000000 2 1.000000 NA 1.000000 47.400000 IGS_037 igs psaB|psaA psaB-psaA 41614 41638 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psaA gene psaA psaA 41639 43891 -1 2253 LSC 0.001775 4 0 300 300 no 1.000000 2 1.000000 NA 1.000000 58.200000 IGS_038 igs psaA|ycf3 psaA-ycf3 43892 44539 0 648 LSC 0.004637 3 1 152 133 no 1.000000 2 1.000000 NA 0.998457 56.500000 ycf3 gene ycf3 ycf3 44540 46583 -1 2044 LSC 0.005871 12 0 47 216 no 1.000000 2 1.000000 NA 1.000000 49.500000 IGS_039 igs ycf3|trnS ycf3-trnS 46584 47462 0 879 LSC 0.005701 5 2 150 130 no 1.000000 2 1.000000 NA 0.997725 57.000000 trnS tRNA trnS trnS 47463 47548 -1 86 LSC 0.000000 0 0 23 44 no 0.000000 1 0.000000 NA 1.000000 20.500000 IGS_040 igs trnS|rps4 trnS-rps4 47549 47850 0 302 LSC 0.023179 7 0 109 39 no 1.000000 2 1.000000 NA 1.000000 53.800000 rps4 gene rps4 rps4 47851 48456 -1 606 LSC 0.001650 1 0 25 108 no 1.000000 2 1.000000 NA 1.000000 46.600000 IGS_041 igs rps4|trnT rps4-trnT 48457 48818 0 362 LSC 0.013812 5 0 300 300 yes 1.000000 2 1.000000 NA 1.000000 61.700000 trnT tRNA trnT trnT 48819 48891 -1 73 LSC 0.000000 0 0 58 246 no 0.000000 1 0.000000 NA 1.000000 23.100000 IGS_042 igs trnT|trnL trnT-trnL 48892 49873 0 982 LSC 0.010204 10 2 131 139 no 1.000000 2 1.000000 NA 0.997963 59.600000 trnL_part1 tRNA trnL trnL 49874 49908 1 35 LSC 0.000000 0 0 26 104 no 0.000000 1 0.000000 NA 1.000000 20.700000 trnL_part2 tRNA trnL trnL 50435 50484 1 50 LSC 0.000000 0 0 85 14 no 0.000000 1 0.000000 NA 1.000000 19.800000 IGS_045 igs trnL|trnF trnL-trnF 50485 50867 0 383 LSC 0.005277 2 4 135 87 no 1.000000 2 1.000000 NA 0.989556 49.800000 trnF tRNA trnF trnF 50868 50938 1 71 LSC 0.000000 0 0 224 16 no 0.000000 1 0.000000 NA 1.000000 20.000000 IGS_046 igs trnF|ndhJ trnF-ndhJ 50939 51365 0 427 LSC 0.016432 7 1 295 161 yes 1.000000 2 1.000000 NA 0.997658 61.900000 ndhJ gene ndhJ ndhJ 51366 51842 -1 477 LSC 0.004193 2 0 11 23 no 1.000000 2 1.000000 NA 1.000000 44.400000 IGS_047 igs ndhJ|ndhK ndhJ-ndhK 51843 51932 0 90 LSC 0.011111 1 0 53 116 no 1.000000 2 1.000000 NA 1.000000 47.900000 ndhK gene ndhK ndhK 51933 52616 -1 684 LSC 0.004386 3 0 66 105 no 1.000000 2 1.000000 NA 1.000000 51.200000 IGS_048 igs ndhK|ndhC ndhK-ndhC 52617 52681 0 65 LSC 0.000000 0 3 194 40 no 1.000000 2 1.000000 NA 0.953846 45.000000 ndhC gene ndhC ndhC 52682 53044 -1 363 LSC 0.013774 5 0 259 82 no 1.000000 2 1.000000 NA 1.000000 52.900000 IGS_049 igs ndhC|trnV ndhC-trnV 53045 53952 0 908 LSC 0.021041 19 5 23 66 yes 1.000000 2 1.000000 NA 0.994493 58.100000 trnV_part2 tRNA trnV trnV 53953 53987 -1 35 LSC 0.000000 0 0 27 31 no 0.000000 1 0.000000 NA 1.000000 20.800000 trnV_part1 tRNA trnV trnV 54587 54625 -1 39 LSC 0.000000 0 0 64 136 no 0.000000 1 0.000000 NA 1.000000 23.500000 IGS_052 igs trnV|trnM trnV-trnM 54626 54815 0 190 LSC 0.005263 1 0 103 148 no 1.000000 2 1.000000 NA 1.000000 48.300000 trnM tRNA trnM trnM 54816 54888 1 73 LSC 0.000000 0 0 53 75 no 0.000000 1 0.000000 NA 1.000000 22.700000 IGS_053 igs trnM|atpE trnM-atpE 54889 55139 0 251 LSC 0.015936 4 0 126 300 no 1.000000 2 1.000000 NA 1.000000 56.100000 atpE gene atpE atpE 55140 55541 -1 402 LSC 0.000000 0 0 42 239 no 0.000000 1 0.000000 NA 1.000000 24.000000 atpB gene atpB atpB 55538 57034 -1 1497 LSC 0.002672 4 0 300 168 no 1.000000 2 1.000000 NA 1.000000 57.900000 IGS_055 igs atpB|rbcL atpB-rbcL 57035 57821 0 787 LSC 0.002554 2 4 237 88 no 1.000000 2 1.000000 NA 0.994917 52.300000 rbcL gene rbcL rbcL 57822 59249 1 1428 LSC 0.006303 9 0 300 249 yes 1.000000 2 1.000000 NA 1.000000 62.400000 IGS_056 igs rbcL|accD rbcL-accD 59250 59809 0 560 LSC 0.007143 4 0 120 213 no 1.000000 2 1.000000 NA 1.000000 56.000000 accD gene accD accD 59810 61306 1 1497 LSC 0.008808 13 21 116 110 no 1.000000 2 1.000000 NA 0.985972 58.400000 IGS_057 igs accD|psaI accD-psaI 61307 62011 0 705 LSC 0.011348 8 0 8 32 no 1.000000 2 1.000000 NA 1.000000 50.900000 psaI gene psaI psaI 62012 62125 1 114 LSC 0.008772 1 0 138 116 no 1.000000 2 1.000000 NA 1.000000 51.200000 IGS_058 igs psaI|ycf4 psaI-ycf4 62126 62545 0 420 LSC 0.004762 2 0 81 198 no 1.000000 2 1.000000 NA 1.000000 48.800000 ycf4 gene ycf4 ycf4 62546 63100 1 555 LSC 0.001802 1 0 210 136 no 1.000000 2 1.000000 NA 1.000000 54.000000 IGS_059 igs ycf4|cemA ycf4-cemA 63101 63669 0 569 LSC 0.051601 29 7 300 98 yes 1.000000 2 1.000000 NA 0.987698 80.500000 cemA gene cemA cemA 63670 64368 1 699 LSC 0.002861 2 0 115 22 no 1.000000 2 1.000000 NA 1.000000 47.000000 IGS_060 igs cemA|petA cemA-petA 64369 64597 0 229 LSC 0.017467 4 0 300 63 no 1.000000 2 1.000000 NA 1.000000 52.300000 petA gene petA petA 64598 65560 1 963 LSC 0.004154 4 0 8 18 no 1.000000 2 1.000000 NA 1.000000 46.700000 IGS_061 igs petA|psbJ petA-psbJ 65561 66629 0 1069 LSC 0.011236 12 1 160 300 yes 1.000000 2 1.000000 NA 0.999065 62.300000 psbJ gene psbJ psbJ 66630 66752 -1 123 LSC 0.000000 0 0 58 238 no 0.000000 1 0.000000 NA 1.000000 23.100000 IGS_062 igs psbJ|psbL psbJ-psbL 66753 66894 0 142 LSC 0.000000 0 0 181 96 no 0.000000 1 0.000000 NA 1.000000 25.900000 psbL gene psbL psbL 66895 67011 -1 117 LSC 0.008547 1 0 300 65 no 1.000000 2 1.000000 NA 1.000000 47.300000 IGS_063 igs psbL|psbF psbL-psbF 67012 67033 0 22 LSC 0.000000 0 0 20 43 no 0.000000 1 0.000000 NA 1.000000 20.200000 psbF gene psbF psbF 67034 67153 -1 120 LSC 0.016667 2 0 42 300 no 1.000000 2 1.000000 NA 1.000000 50.200000 IGS_064 igs psbF|psbE psbF-psbE 67154 67162 0 9 LSC 0.000000 0 0 16 294 no 0.000000 1 0.000000 NA 1.000000 20.000000 psbE gene psbE psbE 67163 67414 -1 252 LSC 0.000000 0 0 25 42 no 0.000000 1 0.000000 NA 1.000000 20.600000 IGS_065 igs psbE|petL psbE-petL 67415 68685 0 1271 LSC 0.014173 18 1 277 101 yes 1.000000 2 1.000000 NA 0.999213 59.500000 petL gene petL petL 68686 68781 1 96 LSC 0.000000 0 0 281 5 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_066 igs petL|petG petL-petG 68782 68949 0 168 LSC 0.011976 2 1 300 120 no 1.000000 2 1.000000 NA 0.994048 54.000000 petG gene petG petG 68950 69063 1 114 LSC 0.000000 0 0 146 6 no 0.000000 1 0.000000 NA 1.000000 19.200000 IGS_067 igs petG|trnW petG-trnW 69064 69204 0 141 LSC 0.014184 2 0 260 93 no 1.000000 2 1.000000 NA 1.000000 52.600000 trnW tRNA trnW trnW 69205 69277 -1 73 LSC 0.000000 0 0 89 20 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_068 igs trnW|trnP trnW-trnP 69278 69460 0 183 LSC 0.017647 3 13 162 162 yes 1.000000 2 1.000000 NA 0.928962 63.900000 trnP tRNA trnP trnP 69461 69534 -1 74 LSC 0.000000 0 0 79 88 no 0.000000 1 0.000000 NA 1.000000 24.700000 IGS_069 igs trnP|psaJ trnP-psaJ 69535 69885 0 351 LSC 0.045584 16 0 153 240 yes 1.000000 2 1.000000 NA 1.000000 76.200000 psaJ gene psaJ psaJ 69886 70020 1 135 LSC 0.000000 0 0 100 105 no 0.000000 1 0.000000 NA 1.000000 26.200000 IGS_070 igs psaJ|rpl33 psaJ-rpl33 70021 70468 0 448 LSC 0.008929 4 0 235 300 no 1.000000 2 1.000000 NA 1.000000 60.700000 rpl33 gene rpl33 rpl33 70469 70669 1 201 LSC 0.000000 0 0 63 114 no 0.000000 1 0.000000 NA 1.000000 23.500000 IGS_071 igs rpl33|rps18 rpl33-rps18 70670 70868 0 199 LSC 0.010050 2 0 264 65 no 1.000000 2 1.000000 NA 1.000000 48.200000 rps18 gene rps18 rps18 70869 71174 1 306 LSC 0.016340 5 0 27 31 no 1.000000 2 1.000000 NA 1.000000 49.000000 IGS_072 igs rps18|rpl20 rps18-rpl20 71175 71443 0 269 LSC 0.011583 3 10 24 3 no 1.000000 2 1.000000 NA 0.962825 47.900000 rpl20 gene rpl20 rpl20 71444 71797 -1 354 LSC 0.002825 1 0 36 135 no 1.000000 2 1.000000 NA 1.000000 42.900000 IGS_073 igs rpl20|rps12 rpl20-rps12 71798 72560 0 763 LSC 0.006562 5 1 300 221 yes 1.000000 2 1.000000 NA 0.998689 62.600000 rps12_part1 gene rps12 rps12 72561 72674 -1 114 LSC 0.000000 0 0 20 107 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_074 igs rps12|clpP rps12-clpP 72675 72825 0 151 LSC 0.013245 2 0 134 186 no 1.000000 2 1.000000 NA 1.000000 55.200000 clpP gene clpP clpP 72826 74918 -1 2093 LSC 0.008193 17 18 17 165 no 1.000000 2 1.000000 NA 0.991400 49.300000 IGS_075 igs clpP|psbB clpP-psbB 74919 75368 0 450 LSC 0.016092 7 15 129 95 no 1.000000 2 1.000000 NA 0.966667 60.200000 psbB gene psbB psbB 75369 76895 1 1527 LSC 0.002620 4 0 78 300 no 1.000000 2 1.000000 NA 1.000000 51.000000 IGS_076 igs psbB|psbT psbB-psbT 76896 77083 0 188 LSC 0.000000 0 0 300 143 no 0.000000 1 0.000000 NA 1.000000 29.500000 psbT gene psbT psbT 77084 77191 1 108 LSC 0.000000 0 0 300 35 no 0.000000 1 0.000000 NA 1.000000 21.400000 IGS_077 igs psbT|psbN psbT-psbN 77192 77251 0 60 LSC 0.033333 2 0 300 300 yes 1.000000 2 1.000000 NA 1.000000 71.700000 psbN gene psbN psbN 77252 77383 -1 132 LSC 0.000000 0 0 19 300 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_078 igs psbN|psbH psbN-psbH 77384 77487 0 104 LSC 0.000000 0 0 151 248 no 0.000000 1 0.000000 NA 1.000000 30.100000 psbH gene psbH psbH 77488 77709 1 222 LSC 0.000000 0 0 255 26 no 0.000000 1 0.000000 NA 1.000000 20.700000 IGS_079 igs psbH|petB psbH-petB 77710 77828 0 119 LSC 0.016807 2 0 300 33 no 1.000000 2 1.000000 NA 1.000000 49.600000 petB gene petB petB 77829 79293 1 1465 LSC 0.004778 7 0 41 300 no 1.000000 2 1.000000 NA 1.000000 49.600000 IGS_080 igs petB|petD petB-petD 79294 79503 0 210 LSC 0.000000 0 0 9 116 no 0.000000 1 0.000000 NA 1.000000 19.400000 petD gene petD petD 79504 80707 1 1204 LSC 0.006645 8 0 219 143 no 1.000000 2 1.000000 NA 1.000000 58.300000 IGS_081 igs petD|rpoA petD-rpoA 80708 80938 0 231 LSC 0.008811 2 4 243 22 no 1.000000 2 1.000000 NA 0.982684 45.900000 rpoA gene rpoA rpoA 80939 81943 -1 1005 LSC 0.002985 3 0 10 59 no 1.000000 2 1.000000 NA 1.000000 46.200000 IGS_082 igs rpoA|rps11 rpoA-rps11 81944 82007 0 64 LSC 0.015625 1 0 300 126 no 1.000000 2 1.000000 NA 1.000000 55.900000 rps11 gene rps11 rps11 82008 82424 -1 417 LSC 0.014388 6 0 4 206 no 1.000000 2 1.000000 NA 1.000000 48.500000 IGS_083 igs rps11|rpl36 rps11-rpl36 82425 82541 0 117 LSC 0.000000 0 0 40 89 no 0.000000 1 0.000000 NA 1.000000 21.800000 rpl36 gene rpl36 rpl36 82542 82655 -1 114 LSC 0.008772 1 0 157 18 no 1.000000 2 1.000000 NA 1.000000 43.900000 IGS_084 igs rpl36|rps8 rpl36-rps8 82656 83052 0 397 LSC 0.017903 7 6 24 300 no 1.000000 2 1.000000 NA 0.984887 53.000000 rps8 gene rps8 rps8 83053 83457 -1 405 LSC 0.000000 0 0 24 0 no 0.000000 1 0.000000 NA 1.000000 20.900000 IGS_085 igs rps8|rpl14 rps8-rpl14 83458 83624 0 167 LSC 0.006024 1 1 300 153 no 1.000000 2 1.000000 NA 0.994012 53.000000 rpl14 gene rpl14 rpl14 83625 83993 -1 369 LSC 0.002710 1 0 166 252 no 1.000000 2 1.000000 NA 1.000000 52.900000 IGS_086 igs rpl14|rpl16 rpl14-rpl16 83994 84123 0 130 LSC 0.000000 0 6 215 122 no 1.000000 2 1.000000 NA 0.953846 51.100000 rpl16 gene rpl16 rpl16 84124 85449 -1 1326 LSC 0.005283 7 1 300 112 no 1.000000 2 1.000000 NA 0.999246 55.300000 IGS_087 igs rpl16|rps3 rpl16-rps3 85450 85597 0 148 LSC 0.006757 1 0 36 162 no 1.000000 2 1.000000 NA 1.000000 44.100000 rps3 gene rps3 rps3 85598 86257 -1 660 LSC 0.009091 6 0 35 2 yes 1.000000 2 1.000000 NA 1.000000 49.100000 IGS_088 igs rps3|rps19 rps3-rps19 86258 86772 0 515 IRb 0.015534 8 0 54 300 no 1.000000 2 1.000000 NA 1.000000 55.000000 rps19 gene rps19 rps19 86773 87051 -1 279 IRb 0.000000 0 0 212 57 no 0.000000 1 0.000000 NA 1.000000 23.000000 IGS_089 igs rps19|rpl2 rps19-rpl2 87052 87119 0 68 IRb 0.014706 1 0 300 201 no 1.000000 2 1.000000 NA 1.000000 61.000000 rpl2 gene rpl2 rpl2 87120 88628 -1 1509 IRb 0.001325 2 0 10 185 no 1.000000 2 1.000000 NA 1.000000 45.200000 IGS_090 igs rpl2|rpl23 rpl2-rpl23 88629 88646 0 18 IRb 0.000000 0 0 300 167 no 0.000000 1 0.000000 NA 1.000000 31.300000 rpl23 gene rpl23 rpl23 88647 88928 -1 282 IRb 0.003546 1 0 300 161 no 1.000000 2 1.000000 NA 1.000000 51.600000 IGS_091 igs rpl23|trnI rpl23-trnI 88929 89093 0 165 IRb 0.006061 1 0 114 300 no 1.000000 2 1.000000 NA 1.000000 49.500000 IGS_092 igs trnI|ycf2 trnI-ycf2 89168 89255 0 88 IRb 0.000000 0 0 77 300 no 0.000000 1 0.000000 NA 1.000000 24.500000 ycf2 gene ycf2 ycf2 89256 96113 1 6858 IRb 0.001021 7 0 165 300 no 1.000000 2 1.000000 NA 1.000000 50.500000 IGS_093 igs ycf2|trnL ycf2-trnL 96114 97043 0 930 IRb 0.001075 1 0 300 126 no 1.000000 2 1.000000 NA 1.000000 53.800000 IGS_094 igs trnL|ndhB trnL-ndhB 97125 97712 0 588 IRb 0.005102 3 0 251 243 no 1.000000 2 1.000000 NA 1.000000 61.400000 ndhB gene ndhB ndhB 97713 99926 -1 2214 IRb 0.001807 4 0 185 300 no 1.000000 2 1.000000 NA 1.000000 57.200000 IGS_095 igs ndhB|rps7 ndhB-rps7 99927 100248 0 322 IRb 0.000000 0 0 110 131 no 0.000000 1 0.000000 NA 1.000000 27.500000 rps7 gene rps7 rps7 100249 100716 -1 468 IRb 0.004274 2 0 300 300 no 1.000000 2 1.000000 NA 1.000000 58.500000 IGS_096 igs rps7|rps12 rps7-rps12 100717 100769 0 53 IRb 0.000000 0 0 108 300 no 0.000000 1 0.000000 NA 1.000000 26.900000 rps12_part2 gene rps12 rps12 100770 101563 -1 794 IRb 0.001259 1 0 161 143 no 1.000000 2 1.000000 NA 1.000000 55.200000 IGS_097 igs rps12|trnV rps12-trnV 101564 103371 0 1808 IRb 0.001661 3 2 106 300 no 1.000000 2 1.000000 NA 0.998894 52.100000 IGS_098 igs trnV|rrn16S trnV-rrn16S 103444 103683 0 240 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 103684 105174 1 1491 IRb 0.000000 0 0 300 177 no 0.000000 1 0.000000 NA 1.000000 38.300000 IGS_099 igs rrn16S|trnI rrn16S-trnI 105175 105468 0 294 IRb 0.006803 2 0 300 300 no 1.000000 2 1.000000 NA 1.000000 56.400000 trnI_part1 tRNA trnI trnI 105469 105505 1 37 IRb 0.000000 0 0 12 300 no 0.000000 1 0.000000 NA 1.000000 19.700000 trnI_part2 tRNA trnI trnI 106465 106499 1 35 IRb 0.000000 0 0 11 300 no 0.000000 1 0.000000 NA 1.000000 19.600000 IGS_102 igs trnI|trnA trnI-trnA 106500 106569 0 70 IRb 0.000000 0 0 46 300 no 0.000000 1 0.000000 NA 1.000000 22.200000 trnA_part1 tRNA trnA trnA 106570 106607 1 38 IRb 0.000000 0 0 116 300 no 0.000000 1 0.000000 NA 1.000000 27.400000 trnA_part2 tRNA trnA trnA 107448 107482 1 35 IRb 0.000000 0 0 247 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_105 igs trnA|rrn23S trnA-rrn23S 107483 107645 0 163 IRb 0.000000 0 0 282 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 107646 110455 1 2810 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 37.300000 IGS_106 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 110456 110553 0 98 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 110554 110656 1 103 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_107 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 110657 110912 0 256 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn5S rRNA rrn5S rrn5S 110913 111033 1 121 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_108 igs rrn5S|trnR rrn5S-trnR 111034 111282 0 249 IRb 0.000000 0 0 300 236 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnR tRNA trnR trnR 111283 111356 1 74 IRb 0.000000 0 0 300 162 no 0.000000 1 0.000000 NA 1.000000 30.900000 IGS_109 igs trnR|trnN trnR-trnN 111357 111968 0 612 IRb 0.003273 2 1 300 300 no 1.000000 2 1.000000 NA 0.998366 60.800000 trnN tRNA trnN trnN 111969 112040 -1 72 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_110 igs trnN|ycf1 trnN-ycf1 112041 112375 0 335 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 34.500000 ycf1 gene ycf1 ycf1 112376 113633 1 1258 IRb 0.005338 6 134 300 42 no 1.000000 2 1.000000 NA 0.893482 53.200000 ndhF gene ndhF ndhF 113561 115795 -1 2235 SSC 0.012223 27 26 123 20 no 1.000000 2 1.000000 NA 0.988367 51.900000 IGS_112 igs ndhF|rpl32 ndhF-rpl32 115796 116659 0 864 SSC 0.010490 9 6 36 122 no 1.000000 2 1.000000 NA 0.993056 53.100000 rpl32 gene rpl32 rpl32 116660 116833 1 174 SSC 0.017341 3 1 113 6 no 1.000000 2 1.000000 NA 0.994253 48.500000 IGS_113 igs rpl32|trnL rpl32-trnL 116834 117915 0 1082 SSC 0.010659 11 50 3 294 no 1.000000 2 1.000000 NA 0.953789 54.500000 IGS_114 igs trnL|ccsA trnL-ccsA 117996 118097 0 102 SSC 0.000000 0 0 251 112 no 0.000000 1 0.000000 NA 1.000000 27.200000 ccsA gene ccsA ccsA 118098 119057 1 960 SSC 0.011458 11 0 300 46 no 1.000000 2 1.000000 NA 1.000000 53.800000 IGS_115 igs ccsA|ndhD ccsA-ndhD 119058 119397 0 340 SSC 0.044586 14 26 9 3 yes 1.000000 2 1.000000 NA 0.923529 67.900000 ndhD gene ndhD ndhD 119398 120927 -1 1530 SSC 0.007190 11 0 158 4 no 1.000000 2 1.000000 NA 1.000000 48.100000 IGS_116 igs ndhD|psaC ndhD-psaC 120928 121064 0 137 SSC 0.021898 3 0 34 192 no 1.000000 2 1.000000 NA 1.000000 52.600000 psaC gene psaC psaC 121065 121310 -1 246 SSC 0.004065 1 0 32 3 no 1.000000 2 1.000000 NA 1.000000 40.100000 IGS_117 igs psaC|ndhE psaC-ndhE 121311 121543 0 233 SSC 0.008584 2 0 53 14 no 1.000000 2 1.000000 NA 1.000000 43.500000 ndhE gene ndhE ndhE 121544 121849 -1 306 SSC 0.003268 1 0 220 82 no 1.000000 2 1.000000 NA 1.000000 45.700000 IGS_118 igs ndhE|ndhG ndhE-ndhG 121850 122090 0 241 SSC 0.020747 5 0 291 300 yes 1.000000 2 1.000000 NA 1.000000 64.400000 ndhG gene ndhG ndhG 122091 122627 -1 537 SSC 0.009311 5 0 9 53 no 1.000000 2 1.000000 NA 1.000000 48.500000 IGS_119 igs ndhG|ndhI ndhG-ndhI 122628 122914 0 287 SSC 0.017422 5 0 30 300 no 1.000000 2 1.000000 NA 1.000000 49.800000 ndhI gene ndhI ndhI 122915 123427 -1 513 SSC 0.001949 1 0 34 80 no 1.000000 2 1.000000 NA 1.000000 45.600000 IGS_120 igs ndhI|ndhA ndhI-ndhA 123428 123509 0 82 SSC 0.012195 1 0 143 300 no 1.000000 2 1.000000 NA 1.000000 55.200000 ndhA gene ndhA ndhA 123510 125744 -1 2235 SSC 0.005403 12 14 1 300 no 1.000000 2 1.000000 NA 0.993736 46.000000 IGS_121 igs ndhA|ndhH ndhA-ndhH 125745 125745 0 1 SSC 0.000000 0 0 101 300 no 0.000000 1 0.000000 NA 1.000000 26.300000 ndhH gene ndhH ndhH 125746 126897 -1 1152 SSC 0.003472 4 0 102 31 no 1.000000 2 1.000000 NA 1.000000 48.100000 IGS_122 igs ndhH|rps15 ndhH-rps15 126898 127030 0 133 SSC 0.007519 1 0 95 261 no 1.000000 2 1.000000 NA 1.000000 48.900000 rps15 gene rps15 rps15 127031 127303 -1 273 SSC 0.003663 1 0 101 70 no 1.000000 2 1.000000 NA 1.000000 44.900000 IGS_123 igs rps15|ycf1 rps15-ycf1 127304 127657 0 354 SSC 0.014205 5 2 11 93 no 1.000000 2 1.000000 NA 0.994350 48.200000 ycf1 gene ycf1 ycf1 127658 133012 -1 5355 SSC 0.009150 49 0 20 300 no 1.000000 2 1.000000 NA 1.000000 44.300000 IGS_124 igs ycf1|trnN ycf1-trnN 133013 133347 0 335 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 34.500000 trnN tRNA trnN trnN 133348 133419 1 72 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_125 igs trnN|trnR trnN-trnR 133420 134031 0 612 IRa 0.003273 2 1 300 300 no 1.000000 2 1.000000 NA 0.998366 60.800000 trnR tRNA trnR trnR 134032 134105 -1 74 IRa 0.000000 0 0 162 300 no 0.000000 1 0.000000 NA 1.000000 30.900000 IGS_126 igs trnR|rrn5S trnR-rrn5S 134106 134354 0 249 IRa 0.000000 0 0 236 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn5S rRNA rrn5S rrn5S 134355 134475 -1 121 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_127 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 134476 134731 0 256 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 134732 134834 -1 103 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_128 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 134835 134932 0 98 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 134933 137742 -1 2810 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 37.300000 IGS_129 igs rrn23S|trnA rrn23S-trnA 137743 137905 0 163 IRa 0.000000 0 0 300 282 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA_part2 tRNA trnA trnA 137906 137940 -1 35 IRa 0.000000 0 0 300 247 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA_part1 tRNA trnA trnA 138781 138818 -1 38 IRa 0.000000 0 0 300 116 no 0.000000 1 0.000000 NA 1.000000 27.400000 IGS_132 igs trnA|trnI trnA-trnI 138819 138888 0 70 IRa 0.000000 0 0 300 46 no 0.000000 1 0.000000 NA 1.000000 22.200000 trnI_part2 tRNA trnI trnI 138889 138923 -1 35 IRa 0.000000 0 0 300 11 no 0.000000 1 0.000000 NA 1.000000 19.600000 trnI_part1 tRNA trnI trnI 139883 139919 -1 37 IRa 0.000000 0 0 300 12 no 0.000000 1 0.000000 NA 1.000000 19.700000 IGS_135 igs trnI|rrn16S trnI-rrn16S 139920 140213 0 294 IRa 0.006803 2 0 300 300 no 1.000000 2 1.000000 NA 1.000000 56.400000 rrn16S rRNA rrn16S rrn16S 140214 141704 -1 1491 IRa 0.000000 0 0 177 300 no 0.000000 1 0.000000 NA 1.000000 38.300000 IGS_136 igs rrn16S|trnV rrn16S-trnV 141705 141944 0 240 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_137 igs trnV|rps12 trnV-rps12 142017 143824 0 1808 IRa 0.001661 3 2 300 106 no 1.000000 2 1.000000 NA 0.998894 52.100000 rps12_part2 gene rps12 rps12 143825 144618 1 794 IRa 0.001259 1 0 143 161 no 1.000000 2 1.000000 NA 1.000000 55.200000 IGS_138 igs rps12|rps7 rps12-rps7 144619 144671 0 53 IRa 0.000000 0 0 300 108 no 0.000000 1 0.000000 NA 1.000000 26.900000 rps7 gene rps7 rps7 144672 145139 1 468 IRa 0.004274 2 0 300 300 no 1.000000 2 1.000000 NA 1.000000 58.500000 IGS_139 igs rps7|ndhB rps7-ndhB 145140 145461 0 322 IRa 0.000000 0 0 131 110 no 0.000000 1 0.000000 NA 1.000000 27.500000 ndhB gene ndhB ndhB 145462 147675 1 2214 IRa 0.001807 4 0 300 185 no 1.000000 2 1.000000 NA 1.000000 57.200000 IGS_140 igs ndhB|trnL ndhB-trnL 147676 148263 0 588 IRa 0.005102 3 0 243 251 no 1.000000 2 1.000000 NA 1.000000 61.400000 IGS_141 igs trnL|ycf2 trnL-ycf2 148345 149274 0 930 IRa 0.001075 1 0 126 300 no 1.000000 2 1.000000 NA 1.000000 53.800000 ycf2 gene ycf2 ycf2 149275 156132 -1 6858 IRa 0.001021 7 0 300 165 no 1.000000 2 1.000000 NA 1.000000 50.500000 IGS_142 igs ycf2|trnI ycf2-trnI 156133 156220 0 88 IRa 0.000000 0 0 300 77 no 0.000000 1 0.000000 NA 1.000000 24.500000 IGS_143 igs trnI|rpl23 trnI-rpl23 156295 156459 0 165 IRa 0.006061 1 0 300 114 no 1.000000 2 1.000000 NA 1.000000 49.500000 rpl23 gene rpl23 rpl23 156460 156741 1 282 IRa 0.003546 1 0 161 300 no 1.000000 2 1.000000 NA 1.000000 51.600000 IGS_144 igs rpl23|rpl2 rpl23-rpl2 156742 156759 0 18 IRa 0.000000 0 0 167 300 no 0.000000 1 0.000000 NA 1.000000 31.300000 rpl2 gene rpl2 rpl2 156760 158268 1 1509 IRa 0.001325 2 0 185 10 no 1.000000 2 1.000000 NA 1.000000 45.200000 IGS_145 igs rpl2|rps19 rpl2-rps19 158269 158336 0 68 IRa 0.014706 1 0 201 300 no 1.000000 2 1.000000 NA 1.000000 61.000000 rps19 gene rps19 rps19 158337 158615 1 279 IRa 0.000000 0 0 57 212 no 0.000000 1 0.000000 NA 1.000000 23.000000 IGS_146 igs rps19|trnH rps19-trnH 158616 2 0 268 IRa 0.003731 1 0 300 30 no 1.000000 2 1.000000 NA 1.000000 41.900000