feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score rpoC2 gene rpoC2 rpoC2 350 7084 -1 6735 LSC 0.470963 2441 1552 45 1 yes 1.000000 2 1.000000 NA 0.769562 72.300000 IGS_001 igs rpoC2|rps3 rpoC2-rps3 7085 8076 0 992 LSC 0.461255 375 179 1 2 no 1.000000 2 1.000000 NA 0.819556 80.000000 rps3 gene rps3 rps3 8077 10227 -1 2151 LSC 0.463687 664 719 0 13 no 1.000000 2 1.000000 NA 0.665737 74.200000 IGS_002 igs rps3|petG rps3-petG 10228 12654 0 2427 LSC 0.442478 700 845 90 1 no 1.000000 2 1.000000 NA 0.651834 73.400000 petG gene petG petG 12655 12768 1 114 LSC 0.506024 42 31 0 2 no 1.000000 2 1.000000 NA 0.728070 71.100000 IGS_003 igs petG|psbL petG-psbL 12769 14190 0 1422 LSC 0.465318 483 384 1 2 no 1.000000 2 1.000000 NA 0.729958 77.500000 psbL gene psbL psbL 14191 14307 -1 117 LSC 0.393443 24 56 21 13 no 1.000000 2 1.000000 NA 0.521368 67.500000 IGS_004 igs psbL|psbF psbL-psbF 14308 15049 0 742 LSC 0.415556 187 292 5 0 no 1.000000 2 1.000000 NA 0.606469 73.900000 psbF gene psbF psbF 15050 15184 -1 135 LSC 0.423529 36 50 0 1 no 1.000000 2 1.000000 NA 0.629630 68.300000 IGS_005 igs psbF|rpoBa psbF-rpoBa 15185 17258 0 2074 LSC 0.490500 697 653 25 6 yes 1.000000 2 1.000000 NA 0.685149 75.400000 rpoBa gene rpoBa rpoBa 17259 19169 1 1911 LSC 0.457355 740 293 0 0 no 1.000000 2 1.000000 NA 0.846677 79.800000 IGS_006 igs rpoBa|rpoBb rpoBa-rpoBb 19170 20118 0 949 LSC 0.465211 341 216 0 0 no 1.000000 2 1.000000 NA 0.772392 78.600000 rpoBb gene rpoBb rpoBb 20119 21675 1 1557 LSC 0.468949 589 301 0 0 no 1.000000 2 1.000000 NA 0.806680 79.400000 IGS_007 igs rpoBb|psbC rpoBb-psbC 21676 22783 0 1108 LSC 0.415638 303 379 1 1 no 1.000000 2 1.000000 NA 0.657942 75.500000 psbC gene psbC psbC 22784 28033 1 5250 LSC 0.429465 1510 1734 1 57 no 1.000000 2 1.000000 NA 0.669714 69.500000 orf230 gene orf230 orf230 23545 24237 1 693 LSC 0.473684 279 104 2 0 no 1.000000 2 1.000000 NA 0.849928 80.800000 IGS_009 igs orf230|orf218 orf230-orf218 24238 25585 0 1348 LSC 0.404734 342 503 0 6 no 1.000000 2 1.000000 NA 0.626855 74.500000 orf218 gene orf218 orf218 25586 26242 1 657 LSC 0.402247 179 212 0 1 no 1.000000 2 1.000000 NA 0.677321 75.900000 IGS_010 igs orf218|orf72 orf218-orf72 26243 26707 0 465 LSC 0.473684 198 47 1 31 no 1.000000 2 1.000000 NA 0.898925 79.400000 orf72 gene orf72 orf72 26708 26926 1 219 LSC 0.419847 55 88 4 1 no 1.000000 2 1.000000 NA 0.598174 67.600000 IGS_011 igs orf72|psaC orf72-psaC 26927 28296 0 1370 LSC 0.419769 327 591 0 1 no 1.000000 2 1.000000 NA 0.568613 73.400000 psaC gene psaC psaC 28297 28542 1 246 LSC 0.464286 78 78 0 8 no 1.000000 2 1.000000 NA 0.682927 69.800000 IGS_012 igs psaC|petL psaC-petL 28543 29239 0 697 LSC 0.445755 189 273 27 33 no 1.000000 2 1.000000 NA 0.608321 76.000000 petL gene petL petL 29240 29338 1 99 LSC 0.378378 28 25 2 2 no 1.000000 2 1.000000 NA 0.747475 71.800000 IGS_013 igs petL|trnN(guu) petL-trnN(guu) 29339 29790 0 452 LSC 0.407407 143 101 1 1 no 1.000000 2 1.000000 NA 0.776549 75.700000 trnN(guu) tRNA trnN(guu) trnN(guu) 29791 29862 1 72 LSC 0.557377 34 11 0 2 no 1.000000 2 1.000000 NA 0.847222 74.500000 IGS_014 igs trnN(guu)|trnMf(cau) trnN(guu)-trnMf(cau) 29863 30166 0 304 LSC 0.450644 105 71 0 1 no 1.000000 2 1.000000 NA 0.766447 72.300000 trnMf(cau) tRNA trnMf(cau) trnMf(cau) 30167 30240 1 74 LSC 0.552239 37 7 1 0 no 1.000000 2 1.000000 NA 0.905405 76.100000 IGS_015 igs trnMf(cau)|trnH(gug) trnMf(cau)-trnH(gug) 30241 30546 0 306 LSC 0.386973 101 45 2 14 no 1.000000 2 1.000000 NA 0.852941 74.900000 trnH(gug) tRNA trnH(gug) trnH(gug) 30547 30618 -1 72 LSC 0.055556 4 0 1 8 no 1.000000 2 1.000000 NA 1.000000 67.000000 IGS_016 igs trnH(gug)|psbD trnH(gug)-psbD 30619 31342 0 724 LSC 0.406040 242 128 25 12 no 1.000000 2 1.000000 NA 0.823204 80.900000 psbD gene psbD psbD 31343 34909 -1 3567 LSC 0.335787 821 1122 0 21 no 1.000000 2 1.000000 NA 0.685450 72.100000 orf414 gene orf414 orf414 32334 33578 -1 1245 LSC 0.432173 360 412 48 32 no 1.000000 2 1.000000 NA 0.669076 78.100000 IGS_018 igs orf414|psaA orf414-psaA 33579 34909 0 1331 LSC 0.235366 193 511 35 21 no 1.000000 2 1.000000 NA 0.616078 75.800000 psaA_part2 gene psaA psaA 34910 37770 1 2861 LSC 0.321717 757 508 14 47 no 1.000000 2 1.000000 NA 0.822440 78.200000 psbJ gene psbJ psbJ 37771 37899 1 129 LSC 0.085271 11 0 0 0 no 1.000000 2 1.000000 NA 1.000000 70.700000 IGS_020 igs psbJ|atpI psbJ-atpI 37900 38569 0 670 LSC 0.404467 163 267 3 29 no 1.000000 2 1.000000 NA 0.601493 74.000000 atpI gene atpI atpI 38570 39307 1 738 LSC 0.170765 125 6 3 0 no 1.000000 2 1.000000 NA 0.991870 79.500000 IGS_021 igs atpI|psaJ atpI-psaJ 39308 39889 0 582 LSC 0.439394 232 54 9 16 no 1.000000 2 1.000000 NA 0.907216 82.700000 psaJ gene psaJ psaJ 39890 40015 1 126 LSC 0.087302 11 0 2 1 no 1.000000 2 1.000000 NA 1.000000 71.000000 IGS_022 igs psaJ|rps12 psaJ-rps12 40016 41166 0 1151 LSC 0.372308 121 826 8 8 no 1.000000 2 1.000000 NA 0.282363 70.400000 rps12 gene rps12 rps12 41167 41559 1 393 LSC 0.180662 71 0 1 4 no 1.000000 2 1.000000 NA 1.000000 74.500000 IGS_023 igs rps12|trnL(uaa) rps12-trnL(uaa) 41560 42566 0 1007 LSC 0.447263 335 258 3 166 no 1.000000 2 1.000000 NA 0.743793 78.000000 trnL(uaa)_part1 tRNA trnL(uaa) trnL(uaa) 42567 42600 1 34 LSC 0.000000 0 0 1 132 no 0.000000 1 0.000000 NA 1.000000 18.800000 trnL(uaa)_part2 tRNA trnL(uaa) trnL(uaa) 43092 43141 1 50 LSC 0.000000 0 0 1 1 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_026 igs trnL(uaa)|rbcL trnL(uaa)-rbcL 43142 43301 0 160 LSC 0.301282 47 4 51 14 no 1.000000 2 1.000000 NA 0.975000 76.000000 rbcL gene rbcL rbcL 43302 46555 1 3254 LSC 0.115546 165 1826 3 0 no 1.000000 2 1.000000 NA 0.438844 62.100000 IGS_027 igs rbcL|trnY(gua) rbcL-trnY(gua) 46556 47079 0 524 LSC 0.379699 101 258 3 27 no 1.000000 2 1.000000 NA 0.507634 71.200000 trnY(gua) tRNA trnY(gua) trnY(gua) 47080 47161 1 82 LSC 0.012195 1 0 0 1 no 1.000000 2 1.000000 NA 1.000000 44.500000 IGS_028 igs trnY(gua)|psbK trnY(gua)-psbK 47162 47957 0 796 LSC 0.488158 371 36 54 6 yes 1.000000 2 1.000000 NA 0.954774 83.600000 psbK gene psbK psbK 47958 48098 -1 141 LSC 0.141844 20 0 1 0 no 1.000000 2 1.000000 NA 1.000000 72.500000 IGS_029 igs psbK|psbH psbK-psbH 48099 48692 0 594 LSC 0.380952 152 195 13 11 no 1.000000 2 1.000000 NA 0.671717 76.500000 psbH gene psbH psbH 48693 48941 -1 249 LSC 0.076305 19 0 1 2 no 1.000000 2 1.000000 NA 1.000000 69.600000 IGS_030 igs psbH|psbN psbH-psbN 48942 49021 0 80 LSC 0.140845 10 9 50 5 no 1.000000 2 1.000000 NA 0.887500 76.000000 psbN gene psbN psbN 49022 49156 1 135 LSC 0.148148 20 0 12 0 no 1.000000 2 1.000000 NA 1.000000 72.500000 IGS_031 igs psbN|psbT psbN-psbT 49157 49437 0 281 LSC 0.425121 88 74 3 0 no 1.000000 2 1.000000 NA 0.736655 71.300000 psbT gene psbT psbT 49438 49533 -1 96 LSC 0.104167 10 0 3 3 no 1.000000 2 1.000000 NA 1.000000 72.700000 IGS_032 igs psbT|psbB psbT-psbB 49534 50975 0 1442 LSC 0.288889 143 947 14 3 no 1.000000 2 1.000000 NA 0.343273 70.700000 psbB gene psbB psbB 50976 56228 -1 5253 LSC 0.117878 180 3726 0 1 no 1.000000 2 1.000000 NA 0.290691 55.400000 orf306 gene orf306 orf306 51997 52917 -1 921 LSC NA 0 921 99 187 no 1.000000 2 1.000000 NA 0.000000 38.700000 IGS_034 igs orf306|orf608 orf306-orf608 52918 53240 0 323 LSC 0.111111 3 296 300 300 no 1.000000 2 1.000000 NA 0.083591 65.200000 orf608 gene orf608 orf608 53241 55067 -1 1827 LSC NA 0 1827 122 300 no 1.000000 2 1.000000 NA 0.000000 39.700000 IGS_035 igs orf608|infA orf608-infA 55068 57324 0 2257 LSC 0.277022 346 1008 300 9 no 1.000000 2 1.000000 NA 0.553389 72.300000 infA gene infA infA 57325 57567 -1 243 LSC 0.179167 43 3 6 65 no 1.000000 2 1.000000 NA 0.987654 74.100000 IGS_036 igs infA|rps2 infA-rps2 57568 58710 0 1143 LSC 0.373913 172 683 8 5 no 1.000000 2 1.000000 NA 0.402450 71.700000 rps2 gene rps2 rps2 58711 61596 -1 2886 LSC 0.299154 849 48 150 0 no 1.000000 2 1.000000 NA 0.983368 77.500000 IGS_037 igs rps2|chlL rps2-chlL 61597 63272 0 1676 LSC 0.425266 680 77 2 1 no 1.000000 2 1.000000 NA 0.954057 82.900000 chlL gene chlL chlL 63273 64163 1 891 LSC 0.198327 166 54 5 1 yes 1.000000 2 1.000000 NA 0.939394 83.400000 IGS_038 igs chlL|rpl36 chlL-rpl36 64164 65031 0 868 LSC 0.360000 135 493 0 8 no 1.000000 2 1.000000 NA 0.432028 71.700000 rpl36 gene rpl36 rpl36 65032 65145 1 114 LSC 0.219298 25 0 5 16 no 1.000000 2 1.000000 NA 1.000000 72.900000 IGS_039 igs rpl36|trnR(ucg) rpl36-trnR(ucg) 65146 65208 0 63 LSC 0.382979 18 16 0 0 no 1.000000 2 1.000000 NA 0.746032 71.600000 trnR(ucg) tRNA trnR(ucg) trnR(ucg) 65209 65282 -1 74 LSC 0.081081 6 0 3 0 no 1.000000 2 1.000000 NA 1.000000 70.100000 IGS_040 igs trnR(ucg)|chlB trnR(ucg)-chlB 65283 65633 0 351 LSC 0.380769 99 91 0 11 no 1.000000 2 1.000000 NA 0.740741 72.500000 chlB gene chlB chlB 65634 67187 1 1554 LSC 0.139034 213 22 4 168 no 1.000000 2 1.000000 NA 0.985843 80.300000 IGS_041 igs chlB|ycf12 chlB-ycf12 67188 68105 0 918 LSC 0.166667 18 810 6 11 no 1.000000 2 1.000000 NA 0.117647 58.100000 ycf12 gene ycf12 ycf12 68106 68207 1 102 LSC 0.137255 14 0 3 4 no 1.000000 2 1.000000 NA 1.000000 72.700000 IGS_042 igs ycf12|trnK(uuu) ycf12-trnK(uuu) 68208 68950 0 743 LSC 0.330000 99 443 21 57 no 1.000000 2 1.000000 NA 0.403769 72.900000 trnK(uuu) tRNA trnK(uuu) trnK(uuu) 68951 69022 1 72 LSC 0.013889 1 0 0 0 no 1.000000 2 1.000000 NA 1.000000 45.500000 IGS_043 igs trnK(uuu)|rps11 trnK(uuu)-rps11 69023 69405 0 383 LSC 0.486486 162 50 14 3 no 1.000000 2 1.000000 NA 0.869452 77.000000 rps11 gene rps11 rps11 69406 69798 -1 393 LSC 0.178117 70 0 0 0 no 1.000000 2 1.000000 NA 1.000000 74.400000 IGS_044 igs rps11|rpl32 rps11-rpl32 69799 71090 0 1292 LSC 0.392617 234 696 6 0 no 1.000000 2 1.000000 NA 0.461300 72.000000 rpl32_part2 gene rpl32 rpl32 71091 71587 -1 497 LSC 0.336170 158 27 6 2 no 1.000000 2 1.000000 NA 0.945674 81.500000 rpl20 gene rpl20 rpl20 71588 71929 -1 342 LSC 0.251462 86 0 0 1 no 1.000000 2 1.000000 NA 1.000000 73.400000 IGS_046 igs rpl20|trnR(acg) rpl20-trnR(acg) 71930 73648 0 1719 LSC 0.381597 282 980 20 105 no 1.000000 2 1.000000 NA 0.429901 72.700000 trnR(acg) tRNA trnR(acg) trnR(acg) 73649 73722 1 74 LSC NA 0 74 39 31 no 1.000000 2 1.000000 NA 0.000000 27.300000 IGS_047 igs trnR(acg)|trnD(guc) trnR(acg)-trnD(guc) 73723 74178 0 456 LSC 0.207547 11 403 113 31 no 1.000000 2 1.000000 NA 0.116228 57.500000 trnD(guc) tRNA trnD(guc) trnD(guc) 74179 74252 -1 74 LSC 0.054054 4 0 192 42 no 1.000000 2 1.000000 NA 1.000000 69.900000 IGS_048 igs trnD(guc)|trnS(uga) trnD(guc)-trnS(uga) 74253 74424 0 172 LSC 0.264706 9 138 16 8 no 1.000000 2 1.000000 NA 0.197674 57.100000 trnS(uga) tRNA trnS(uga) trnS(uga) 74425 74511 -1 87 LSC 0.034483 3 0 0 1 no 1.000000 2 1.000000 NA 1.000000 57.300000 IGS_049 igs trnS(uga)|trnT(ugu) trnS(uga)-trnT(ugu) 74512 74677 0 166 LSC 0.400000 62 11 55 14 no 1.000000 2 1.000000 NA 0.933735 77.900000 trnT(ugu) tRNA trnT(ugu) trnT(ugu) 74678 74750 -1 73 LSC 0.054795 4 0 3 2 no 1.000000 2 1.000000 NA 1.000000 67.000000 IGS_050 igs trnT(ugu)|ycf3 trnT(ugu)-ycf3 74751 75361 0 611 LSC 0.402655 182 159 12 0 no 1.000000 2 1.000000 NA 0.739771 77.700000 ycf3 gene ycf3 ycf3 75362 75865 -1 504 LSC 0.126984 64 0 0 0 no 1.000000 2 1.000000 NA 1.000000 76.800000 IGS_051 igs ycf3|ycf4 ycf3-ycf4 75866 76269 0 404 LSC 0.409091 153 30 15 18 no 1.000000 2 1.000000 NA 0.925743 80.000000 ycf4 gene ycf4 ycf4 76270 76917 -1 648 LSC 0.160494 104 0 10 0 no 1.000000 2 1.000000 NA 1.000000 78.800000 IGS_052 igs ycf4|rps9 ycf4-rps9 76918 77005 0 88 LSC 0.469880 39 5 1 3 no 1.000000 2 1.000000 NA 0.943182 77.200000 rps9 gene rps9 rps9 77006 77434 -1 429 LSC 0.179487 77 0 1 7 no 1.000000 2 1.000000 NA 1.000000 75.300000 IGS_053 igs rps9|psbE rps9-psbE 77435 78356 0 922 LSC 0.407643 256 294 5 15 no 1.000000 2 1.000000 NA 0.681128 76.400000 psbE gene psbE psbE 78357 78608 -1 252 LSC 0.071429 18 0 29 21 no 1.000000 2 1.000000 NA 1.000000 70.500000 IGS_054 igs psbE|trnG(ucc) psbE-trnG(ucc) 78609 79093 0 485 LSC 0.413953 178 55 10 74 no 1.000000 2 1.000000 NA 0.886598 80.200000 trnG(ucc) tRNA trnG(ucc) trnG(ucc) 79094 79166 -1 73 LSC 0.000000 0 0 0 1 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_055 igs trnG(ucc)|trnW(cca) trnG(ucc)-trnW(cca) 79167 79698 0 532 LSC 0.447500 179 132 73 27 no 1.000000 2 1.000000 NA 0.751880 78.600000 trnW(cca) tRNA trnW(cca) trnW(cca) 79699 79771 1 73 LSC 0.013699 1 0 28 1 no 1.000000 2 1.000000 NA 1.000000 45.500000 IGS_056 igs trnW(cca)|atpA trnW(cca)-atpA 79772 80492 0 721 LSC 0.412651 274 57 45 3 yes 1.000000 2 1.000000 NA 0.920943 83.000000 atpA gene atpA atpA 80493 82022 1 1530 LSC 0.155556 238 0 7 79 no 1.000000 2 1.000000 NA 1.000000 79.200000 IGS_057 igs atpA|psbI atpA-psbI 82023 82946 0 924 LSC 0.370667 139 549 2 8 no 1.000000 2 1.000000 NA 0.405844 71.500000 psbI gene psbI psbI 82947 83063 1 117 LSC 0.136752 16 0 2 3 no 1.000000 2 1.000000 NA 1.000000 72.600000 IGS_058 igs psbI|cemA psbI-cemA 83064 83552 0 489 LSC 0.359140 167 24 6 8 no 1.000000 2 1.000000 NA 0.950920 81.600000 cemA gene cemA cemA 83553 84764 1 1212 LSC 0.239720 274 69 9 273 yes 1.000000 2 1.000000 NA 0.943069 84.100000 IGS_059 igs cemA|rpl12 cemA-rpl12 84765 85458 0 694 LSC 0.289157 48 528 12 11 no 1.000000 2 1.000000 NA 0.239193 66.200000 rpl12 gene rpl12 rpl12 85459 85851 1 393 LSC 0.203562 80 0 0 0 no 1.000000 2 1.000000 NA 1.000000 74.400000 IGS_060 igs rpl12|chlN rpl12-chlN 85852 87340 0 1489 LSC 0.342481 312 578 3 7 no 1.000000 2 1.000000 NA 0.611820 74.300000 chlN gene chlN chlN 87341 88666 1 1326 LSC 0.154663 204 7 1 2 no 1.000000 2 1.000000 NA 0.994721 79.300000 IGS_061 igs chlN|trnS(gcu) chlN-trnS(gcu) 88667 89639 0 973 LSC 0.412698 390 28 3 0 no 1.000000 2 1.000000 NA 0.971223 81.500000 trnS(gcu) tRNA trnS(gcu) trnS(gcu) 89640 89728 1 89 LSC 0.595506 53 0 0 3 no 1.000000 2 1.000000 NA 1.000000 72.500000 IGS_062 igs trnS(gcu)|atpH trnS(gcu)-atpH 89729 89946 0 218 LSC 0.386047 83 3 0 53 no 1.000000 2 1.000000 NA 0.986239 73.800000 atpH gene atpH atpH 89947 90195 1 249 LSC 0.076305 19 0 7 0 no 1.000000 2 1.000000 NA 1.000000 69.500000 IGS_063 igs atpH|atpF atpH-atpF 90196 91493 0 1298 LSC 0.413249 393 347 3 0 no 1.000000 2 1.000000 NA 0.732666 77.500000 atpF gene atpF atpF 91494 92021 1 528 LSC 0.176136 93 0 4 1 no 1.000000 2 1.000000 NA 1.000000 77.300000 IGS_064 igs atpF|psbA atpF-psbA 92022 92361 0 340 LSC 0.345679 112 16 3 24 no 1.000000 2 1.000000 NA 0.952941 78.100000 psbA gene psbA psbA 92362 96521 1 4160 LSC 0.279990 1118 167 7 0 no 1.000000 2 1.000000 NA 0.959856 77.700000 orf119 gene orf119 orf119 92774 93133 1 360 LSC 0.429412 146 20 1 3 no 1.000000 2 1.000000 NA 0.944444 78.500000 IGS_066 igs orf119|orf134 orf119-orf134 93134 93895 0 762 LSC 0.325284 229 58 1 5 no 1.000000 2 1.000000 NA 0.923885 82.900000 orf134 gene orf134 orf134 93896 94300 1 405 LSC 0.348259 140 3 4 3 no 1.000000 2 1.000000 NA 0.992593 75.600000 IGS_067 igs orf134|rrf orf134-rrf 94301 98043 0 3743 LSC 0.308656 1109 150 0 1 no 1.000000 2 1.000000 NA 0.959925 78.300000 rrf rRNA rrf rrf 98044 98166 -1 123 IRb 0.463768 32 54 3 1 no 1.000000 2 1.000000 NA 0.560976 67.100000 IGS_068 igs rrf|rrl rrf-rrl 98167 98316 0 150 IRb 0.554745 76 13 0 0 no 1.000000 2 1.000000 NA 0.913333 76.300000 rrl_part4 rRNA rrl rrl 98317 98606 -1 290 IRb 0.500000 112 66 0 0 no 1.000000 2 1.000000 NA 0.772414 72.300000 orf125 gene orf125 orf125 98896 99273 -1 378 IRb 0.475362 164 33 3 0 no 1.000000 2 1.000000 NA 0.912698 77.900000 IGS_071 igs orf125|rrl orf125-rrl 99274 99758 0 485 IRb 0.473684 180 105 1 1 no 1.000000 2 1.000000 NA 0.783505 76.600000 rrl_part3 rRNA rrl rrl 99759 100432 -1 674 IRb 0.499093 275 123 3 6 no 1.000000 2 1.000000 NA 0.817507 80.100000 IGS_072 igs rrl|orf215 rrl-orf215 100433 100600 0 168 IRb 0.520000 65 43 17 1 no 1.000000 2 1.000000 NA 0.744048 71.600000 orf215 gene orf215 orf215 100601 101248 -1 648 IRb 0.444251 255 74 0 0 no 1.000000 2 1.000000 NA 0.885802 81.800000 IGS_073 igs orf215|rrl orf215-rrl 101249 101418 0 170 IRb 0.487805 80 6 2 0 no 1.000000 2 1.000000 NA 0.964706 75.900000 rrl_part2 rRNA rrl rrl 101419 101424 -1 6 IRb 0.833333 5 0 2 0 no 1.000000 2 1.000000 NA 1.000000 72.500000 IGS_074 igs rrl|orf373 rrl-orf373 101425 101504 0 80 IRb 0.441558 34 3 0 3 no 1.000000 2 1.000000 NA 0.962500 76.100000 orf373 gene orf373 orf373 101505 102626 -1 1122 IRb 0.473327 488 91 0 1 no 1.000000 2 1.000000 NA 0.918895 82.700000 IGS_075 igs orf373|rrl orf373-rrl 102627 102764 0 138 IRb 0.456522 63 0 1 1 no 1.000000 2 1.000000 NA 1.000000 72.600000 rrl_part1 rRNA rrl rrl 102765 104918 -1 2154 IRb 0.517723 1037 151 0 0 no 1.000000 2 1.000000 NA 0.929898 81.700000 IGS_076 igs rrl|trnA(ugc) rrl-trnA(ugc) 104919 105005 0 87 IRb 0.505747 44 0 0 2 no 1.000000 2 1.000000 NA 1.000000 72.500000 trnA(ugc) tRNA trnA(ugc) trnA(ugc) 105006 105078 -1 73 IRb 0.416667 25 13 0 1 no 1.000000 2 1.000000 NA 0.821918 73.700000 IGS_077 igs trnA(ugc)|trnI(gau) trnA(ugc)-trnI(gau) 105079 105250 0 172 IRb 0.470085 55 55 0 1 no 1.000000 2 1.000000 NA 0.680233 69.800000 trnI(gau) tRNA trnI(gau) trnI(gau) 105251 105322 -1 72 IRb 0.555556 40 0 0 0 no 1.000000 2 1.000000 NA 1.000000 72.500000 IGS_078 igs trnI(gau)|rrs trnI(gau)-rrs 105323 105425 0 103 IRb 0.494382 44 14 1 0 no 1.000000 2 1.000000 NA 0.864078 74.900000 rrs_part2 rRNA rrs rrs 105426 106546 -1 1121 IRb 0.493548 459 191 0 4 no 1.000000 2 1.000000 NA 0.829616 80.200000 rrs_part1 rRNA rrs rrs 107647 108056 -1 410 IRb 0.489950 195 12 1 5 no 1.000000 2 1.000000 NA 0.970732 77.700000 IGS_081 igs rrs|ftsH rrs-ftsH 108057 108566 0 510 IRb 0.470238 237 6 5 4 no 1.000000 2 1.000000 NA 0.988235 78.300000 ftsH gene ftsH ftsH 108567 118463 -1 9897 SSC 0.439778 3969 872 1 0 no 1.000000 2 1.000000 NA 0.911892 76.300000 psaA_part3 gene psaA psaA 118464 126219 1 7756 SSC 0.458734 3385 377 2 1 no 1.000000 2 1.000000 NA 0.951392 77.300000 orf333 gene orf333 orf333 121551 122552 1 1002 SSC 0.458422 430 64 1 0 yes 1.000000 2 1.000000 NA 0.936128 83.200000 IGS_084 igs orf333|orf579 orf333-orf579 122553 123902 0 1350 SSC 0.487843 622 75 0 2 yes 1.000000 2 1.000000 NA 0.944444 83.400000 orf579 gene orf579 orf579 123903 125642 1 1740 SSC 0.463980 760 102 2 1 no 1.000000 2 1.000000 NA 0.941379 82.900000 IGS_085 igs orf579|trnG(gcc) orf579-trnG(gcc) 125643 127068 0 1426 SSC 0.418690 569 67 1 0 yes 1.000000 2 1.000000 NA 0.953015 83.300000 trnG(gcc) tRNA trnG(gcc) trnG(gcc) 127069 127140 1 72 SSC 0.541667 26 24 1 10 no 1.000000 2 1.000000 NA 0.666667 69.500000 IGS_086 igs trnG(gcc)|rps4 trnG(gcc)-rps4 127141 127633 0 493 SSC 0.390123 158 88 2 1 no 1.000000 2 1.000000 NA 0.821501 77.800000 rps4 gene rps4 rps4 127634 128377 1 744 SSC 0.438280 316 23 0 2 no 1.000000 2 1.000000 NA 0.969086 81.700000 IGS_087 igs rps4|trnS(gga) rps4-trnS(gga) 128378 128974 0 597 SSC 0.434705 243 38 1 0 yes 1.000000 2 1.000000 NA 0.936348 83.100000 trnS(gga) tRNA trnS(gga) trnS(gga) 128975 129063 1 89 SSC 0.519481 40 12 5 12 no 1.000000 2 1.000000 NA 0.865169 75.300000 IGS_088 igs trnS(gga)|clpP trnS(gga)-clpP 129064 129304 0 241 SSC 0.472340 111 6 0 1 no 1.000000 2 1.000000 NA 0.975104 74.900000 clpP gene clpP clpP 129305 130885 -1 1581 SSC 0.436376 655 80 0 0 yes 1.000000 2 1.000000 NA 0.949399 83.400000 IGS_089 igs clpP|rpoA clpP-rpoA 130886 132000 0 1115 SSC 0.445336 444 118 0 0 no 1.000000 2 1.000000 NA 0.894170 82.000000 rpoA gene rpoA rpoA 132001 132912 -1 912 SSC 0.447044 363 100 0 1 no 1.000000 2 1.000000 NA 0.890351 81.900000 IGS_090 igs rpoA|rpoC1 rpoA-rpoC1 132913 134165 0 1253 SSC 0.438725 537 29 0 0 no 1.000000 2 1.000000 NA 0.976856 81.000000 rpoC1 gene rpoC1 rpoC1 134166 138074 -1 3909 SSC 0.448057 1626 280 0 0 no 1.000000 2 1.000000 NA 0.928370 78.400000 IGS_091 igs rpoC1|trnL(uag) rpoC1-trnL(uag) 138075 139897 0 1823 SSC 0.416910 715 108 0 0 no 1.000000 2 1.000000 NA 0.940757 82.700000 trnL(uag) tRNA trnL(uag) trnL(uag) 139898 139981 -1 84 SSC 0.424658 31 11 1 2 no 1.000000 2 1.000000 NA 0.869048 75.100000 IGS_092 igs trnL(uag)|trnI(cau) trnL(uag)-trnI(cau) 139982 140254 0 273 SSC 0.390335 105 4 0 1 no 1.000000 2 1.000000 NA 0.985348 73.900000 trnI(cau) tRNA trnI(cau) trnI(cau) 140255 140327 -1 73 SSC 0.595238 25 31 2 39 no 1.000000 2 1.000000 NA 0.575342 67.300000 IGS_093 igs trnI(cau)|trnMe(cau) trnI(cau)-trnMe(cau) 140328 140615 0 288 SSC 0.504202 120 50 35 1 no 1.000000 2 1.000000 NA 0.826389 73.900000 trnMe(cau) tRNA trnMe(cau) trnMe(cau) 140616 140689 -1 74 SSC 0.409091 9 52 0 2 no 1.000000 2 1.000000 NA 0.297297 63.700000 IGS_094 igs trnMe(cau)|trnP(ugg) trnMe(cau)-trnP(ugg) 140690 141445 0 756 SSC 0.396552 253 118 3 1 no 1.000000 2 1.000000 NA 0.843915 80.700000 trnP(ugg) tRNA trnP(ugg) trnP(ugg) 141446 141519 -1 74 SSC 0.507463 34 7 0 1 no 1.000000 2 1.000000 NA 0.905405 76.100000 IGS_095 igs trnP(ugg)|trnV(uac) trnP(ugg)-trnV(uac) 141520 141740 0 221 SSC 0.411765 77 34 1 17 no 1.000000 2 1.000000 NA 0.846154 74.500000 trnV(uac) tRNA trnV(uac) trnV(uac) 141741 141813 -1 73 SSC 0.534483 31 15 2 0 no 1.000000 2 1.000000 NA 0.794521 73.000000 IGS_096 igs trnV(uac)|trnR(ucu) trnV(uac)-trnR(ucu) 141814 142607 0 794 SSC 0.477961 347 68 0 6 no 1.000000 2 1.000000 NA 0.914358 82.600000 trnR(ucu) tRNA trnR(ucu) trnR(ucu) 142608 142679 -1 72 SSC 0.055556 4 0 9 5 no 1.000000 2 1.000000 NA 1.000000 67.300000 IGS_097 igs trnR(ucu)|petD trnR(ucu)-petD 142680 143001 0 322 SSC 0.502591 97 129 5 15 no 1.000000 2 1.000000 NA 0.599379 68.300000 petD gene petD petD 143002 143484 -1 483 SSC 0.157350 76 0 0 1 no 1.000000 2 1.000000 NA 1.000000 76.300000 IGS_098 igs petD|petA petD-petA 143485 144319 0 835 SSC 0.457554 318 140 20 6 no 1.000000 2 1.000000 NA 0.832335 80.700000 petA gene petA petA 144320 145252 -1 933 SSC 0.203463 188 9 14 14 no 1.000000 2 1.000000 NA 0.990354 80.700000 IGS_099 igs petA|trnE(uuc) petA-trnE(uuc) 145253 146011 0 759 SSC 0.341463 140 349 2 78 no 1.000000 2 1.000000 NA 0.540184 73.200000 trnE(uuc) tRNA trnE(uuc) trnE(uuc) 146012 146084 -1 73 SSC 0.000000 0 0 1 5 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_100 igs trnE(uuc)|trnF(gaa) trnE(uuc)-trnF(gaa) 146085 146553 0 469 SSC 0.442353 188 44 74 201 yes 1.000000 2 1.000000 NA 0.906183 85.200000 trnF(gaa) tRNA trnF(gaa) trnF(gaa) 146554 146625 -1 72 SSC 0.000000 0 0 28 129 no 0.000000 1 0.000000 NA 1.000000 20.900000 IGS_101 igs trnF(gaa)|atpE trnF(gaa)-atpE 146626 147970 0 1345 SSC 0.378049 310 525 100 21 no 1.000000 2 1.000000 NA 0.609665 75.600000 atpE gene atpE atpE 147971 148378 1 408 SSC 0.147059 60 0 1 0 no 1.000000 2 1.000000 NA 1.000000 74.800000 IGS_102 igs atpE|rps7 atpE-rps7 148379 148997 0 619 SSC 0.378531 67 442 3 6 no 1.000000 2 1.000000 NA 0.285945 70.000000 rps7 gene rps7 rps7 148998 149492 1 495 SSC 0.197980 98 0 91 0 no 1.000000 2 1.000000 NA 1.000000 76.600000 IGS_103 igs rps7|rpl32 rps7-rpl32 149493 150159 0 667 SSC 0.398601 171 238 12 8 no 1.000000 2 1.000000 NA 0.643178 75.600000 rpl32_part1 gene rpl32 rpl32 150160 152047 1 1888 SSC 0.350731 336 930 5 3 no 1.000000 2 1.000000 NA 0.507415 72.000000 rpl23 gene rpl23 rpl23 152048 152434 1 387 SSC 0.351906 120 46 6 0 no 1.000000 2 1.000000 NA 0.881137 77.200000 IGS_105 igs rpl23|rpl2 rpl23-rpl2 152435 152616 0 182 SSC 0.346405 53 29 0 5 no 1.000000 2 1.000000 NA 0.840659 74.300000 rpl2 gene rpl2 rpl2 152617 153444 1 828 SSC 0.218826 179 10 3 27 no 1.000000 2 1.000000 NA 0.987923 80.100000 IGS_106 igs rpl2|rps19 rpl2-rps19 153445 153958 0 514 SSC 0.222222 18 433 12 5 no 1.000000 2 1.000000 NA 0.157588 58.700000 rps19 gene rps19 rps19 153959 154237 1 279 SSC 0.179211 50 0 5 4 no 1.000000 2 1.000000 NA 1.000000 72.800000 IGS_107 igs rps19|atpB rps19-atpB 154238 155201 0 964 SSC 0.405204 218 426 2 5 no 1.000000 2 1.000000 NA 0.558091 73.400000 atpB gene atpB atpB 155202 156650 1 1449 SSC 0.160801 233 0 7 1 no 1.000000 2 1.000000 NA 1.000000 78.800000 IGS_108 igs atpB|rps18 atpB-rps18 156651 157655 0 1005 SSC 0.296296 64 789 2 0 no 1.000000 2 1.000000 NA 0.214925 64.400000 rps18 gene rps18 rps18 157656 158072 1 417 SSC 0.226933 91 16 1 32 no 1.000000 2 1.000000 NA 0.961631 78.700000 IGS_109 igs rps18|petB rps18-petB 158073 158194 0 122 SSC 0.449438 40 33 6 33 no 1.000000 2 1.000000 NA 0.729508 71.600000 petB gene petB petB 158195 158842 1 648 SSC 0.149691 97 0 1 10 no 1.000000 2 1.000000 NA 1.000000 78.800000 IGS_110 igs petB|tufA petB-tufA 158843 159255 0 413 SSC 0.407407 154 35 3 8 no 1.000000 2 1.000000 NA 0.915254 78.900000 tufA gene tufA tufA 159256 160512 1 1257 SSC 0.128878 162 0 2 8 no 1.000000 2 1.000000 NA 1.000000 78.900000 IGS_111 igs tufA|trnQ(uug) tufA-trnQ(uug) 160513 161223 0 711 SSC 0.459959 224 224 13 0 no 1.000000 2 1.000000 NA 0.684951 76.100000 trnQ(uug) tRNA trnQ(uug) trnQ(uug) 161224 161295 1 72 SSC 0.666667 6 63 2 17 no 1.000000 2 1.000000 NA 0.125000 59.600000 IGS_112 igs trnQ(uug)|psaB trnQ(uug)-psaB 161296 163561 0 2266 SSC 0.419492 693 614 63 9 no 1.000000 2 1.000000 NA 0.729038 76.500000 psaB gene psaB psaB 163562 169998 1 6437 SSC 0.441064 1957 2000 8 0 no 1.000000 2 1.000000 NA 0.689296 70.000000 orf204 gene orf204 orf204 164362 164976 1 615 SSC 0.495256 261 88 17 11 no 1.000000 2 1.000000 NA 0.856911 81.800000 IGS_114 igs orf204|orf227 orf204-orf227 164977 165908 0 932 SSC 0.451724 262 352 25 1 no 1.000000 2 1.000000 NA 0.622318 74.500000 orf227 gene orf227 orf227 165909 166592 1 684 SSC 0.365931 116 367 3 1 no 1.000000 2 1.000000 NA 0.463450 72.100000 IGS_115 igs orf227|orf364 orf227-orf364 166593 168051 0 1459 SSC 0.428270 406 511 3 1 no 1.000000 2 1.000000 NA 0.649760 75.200000 orf364 gene orf364 orf364 168052 169146 1 1095 SSC 0.398795 331 265 0 0 no 1.000000 2 1.000000 NA 0.757991 78.200000 IGS_116 igs orf364|ccsA orf364-ccsA 169147 170705 0 1559 SSC 0.452012 438 590 4 115 no 1.000000 2 1.000000 NA 0.621552 74.500000 ccsA gene ccsA ccsA 170706 171647 1 942 SSC 0.426396 168 548 143 41 no 1.000000 2 1.000000 NA 0.418259 74.600000 IGS_117 igs ccsA|psbZ ccsA-psbZ 171648 173770 0 2123 SSC 0.419307 569 766 34 1 no 1.000000 2 1.000000 NA 0.639190 73.600000 psbZ gene psbZ psbZ 173771 173959 1 189 SSC 0.462121 61 57 1 0 no 1.000000 2 1.000000 NA 0.698413 70.300000 IGS_118 igs psbZ|psbM psbZ-psbM 173960 175026 0 1067 SSC 0.403131 206 556 1 0 no 1.000000 2 1.000000 NA 0.478913 72.200000 psbM gene psbM psbM 175027 175131 1 105 SSC 0.485714 51 0 0 0 no 1.000000 2 1.000000 NA 1.000000 72.500000 IGS_119 igs psbM|rps14 psbM-rps14 175132 175694 0 563 SSC 0.378917 133 212 2 0 no 1.000000 2 1.000000 NA 0.623446 73.600000 rps14 gene rps14 rps14 175695 175997 1 303 SSC 0.374302 67 124 0 7 no 1.000000 2 1.000000 NA 0.590759 67.400000 psaA_part1 gene psaA psaA 175997 179830 -1 3834 SSC 0.434951 1237 990 55 0 no 1.000000 2 1.000000 NA 0.741784 73.300000 orf700 gene orf700 orf700 176856 178958 -1 2103 SSC 0.447460 775 371 0 2 no 1.000000 2 1.000000 NA 0.823585 78.800000 IGS_122 igs orf700|rps8 orf700-rps8 178959 180249 0 1291 SSC 0.408705 385 349 0 1 no 1.000000 2 1.000000 NA 0.729667 77.400000 rps8 gene rps8 rps8 180250 180675 -1 426 SSC 0.464832 152 99 1 7 no 1.000000 2 1.000000 NA 0.767606 74.900000 IGS_123 igs rps8|rpl5 rps8-rpl5 180676 181496 0 821 SSC 0.441696 250 255 1 0 no 1.000000 2 1.000000 NA 0.689403 76.300000 rpl5 gene rpl5 rpl5 181497 182033 -1 537 SSC 0.446281 216 53 0 0 no 1.000000 2 1.000000 NA 0.901304 80.900000 IGS_124 igs rpl5|rpl14 rpl5-rpl14 182034 182779 0 746 SSC 0.441392 241 200 2 0 no 1.000000 2 1.000000 NA 0.731903 77.500000 rpl14 gene rpl14 rpl14 182780 183145 -1 366 SSC 0.482759 126 105 1 0 no 1.000000 2 1.000000 NA 0.713115 72.100000 IGS_125 igs rpl14|rpl16 rpl14-rpl16 183146 183520 0 375 SSC 0.411429 72 200 38 0 no 1.000000 2 1.000000 NA 0.466667 67.400000 rpl16 gene rpl16 rpl16 183521 183955 -1 435 SSC 0.474359 148 123 101 0 no 1.000000 2 1.000000 NA 0.717241 73.600000 IGS_126 igs rpl16|trnC(gca) rpl16-trnC(gca) 183956 184049 0 94 SSC 0.523810 33 31 0 20 no 1.000000 2 1.000000 NA 0.670213 69.500000 trnC(gca) tRNA trnC(gca) trnC(gca) 184050 184121 -1 72 SSC 0.235294 4 55 23 0 no 1.000000 2 1.000000 NA 0.236111 57.400000 IGS_127 igs trnC(gca)|trnL(caa) trnC(gca)-trnL(caa) 184122 185008 0 887 SSC 0.401471 273 207 1 1 no 1.000000 2 1.000000 NA 0.766629 78.500000 trnL(caa) tRNA trnL(caa) trnL(caa) 185009 185088 -1 80 SSC 0.511628 22 37 0 30 no 1.000000 2 1.000000 NA 0.537500 66.700000 IGS_128 igs trnL(caa)|ycf1 trnL(caa)-ycf1 185089 186603 0 1515 SSC 0.484746 572 335 38 4 yes 1.000000 2 1.000000 NA 0.778878 79.000000 ycf1 gene ycf1 ycf1 186604 195219 1 8616 SSC 0.459472 3078 1917 21 0 no 1.000000 2 1.000000 NA 0.777507 72.500000 IGS_129 igs ycf1|rrs ycf1-rrs 195220 195992 0 773 IRa 0.450079 284 142 2 1 no 1.000000 2 1.000000 NA 0.816300 79.900000 rrs_part1 rRNA rrs rrs 195993 196402 1 410 IRa 0.478022 87 228 0 0 no 1.000000 2 1.000000 NA 0.443902 67.800000 rrs_part2 rRNA rrs rrs 197503 198623 1 1121 IRa 0.529499 359 443 0 0 yes 1.000000 2 1.000000 NA 0.604817 73.900000 IGS_132 igs rrs|trnI(gau) rrs-trnI(gau) 198624 198726 0 103 IRa 0.465517 27 45 0 65 no 1.000000 2 1.000000 NA 0.563107 67.000000 trnI(gau) tRNA trnI(gau) trnI(gau) 198727 198798 1 72 IRa 0.444444 4 63 38 0 no 1.000000 2 1.000000 NA 0.125000 56.000000 IGS_133 igs trnI(gau)|trnA(ugc) trnI(gau)-trnA(ugc) 198799 198970 0 172 IRa 0.583333 42 100 1 49 no 1.000000 2 1.000000 NA 0.418605 65.300000 trnA(ugc) tRNA trnA(ugc) trnA(ugc) 198971 199043 1 73 IRa 0.600000 15 48 48 0 no 1.000000 2 1.000000 NA 0.342466 64.300000 IGS_134 igs trnA(ugc)|rrl trnA(ugc)-rrl 199044 199130 0 87 IRa 0.462687 31 20 1 3 no 1.000000 2 1.000000 NA 0.770115 72.400000 rrl_part1 rRNA rrl rrl 199131 201284 1 2154 IRa 0.495098 606 930 11 10 no 1.000000 2 1.000000 NA 0.568245 72.700000 orf373 gene orf373 orf373 201423 202544 1 1122 IRa 0.439264 358 307 1 2 no 1.000000 2 1.000000 NA 0.726381 77.400000 IGS_137 igs orf373|rrl orf373-rrl 202545 202624 0 80 IRa 0.467532 36 3 2 2 no 1.000000 2 1.000000 NA 0.962500 76.300000 rrl_part2 rRNA rrl rrl 202625 202630 1 6 IRa 0.500000 3 0 0 1 no 1.000000 2 1.000000 NA 1.000000 72.500000 IGS_138 igs rrl|orf215 rrl-orf215 202631 202800 0 170 IRa 0.425532 40 76 0 2 no 1.000000 2 1.000000 NA 0.552941 66.900000 orf215 gene orf215 orf215 202801 203448 1 648 IRa 0.458252 236 133 4 0 no 1.000000 2 1.000000 NA 0.794753 79.200000 IGS_139 igs orf215|rrl orf215-rrl 203449 203616 0 168 IRa 0.482143 54 56 0 3 no 1.000000 2 1.000000 NA 0.666667 69.400000 rrl_part3 rRNA rrl rrl 203617 204290 1 674 IRa 0.554545 244 234 13 8 no 1.000000 2 1.000000 NA 0.652819 75.800000 IGS_140 igs rrl|orf125 rrl-orf125 204291 204775 0 485 IRa 0.479651 165 141 13 2 no 1.000000 2 1.000000 NA 0.709278 74.600000 orf125 gene orf125 orf125 204776 205153 1 378 IRa 0.455939 119 117 1 0 no 1.000000 2 1.000000 NA 0.690476 71.700000 IGS_141 igs orf125|rrl orf125-rrl 205154 205442 0 289 IRa 0.508000 127 39 0 21 no 1.000000 2 1.000000 NA 0.865052 75.000000 rrl_part4 rRNA rrl rrl 205443 205732 1 290 IRa 0.518919 96 105 12 2 no 1.000000 2 1.000000 NA 0.637931 68.700000 IGS_142 igs rrl|rrf rrl-rrf 205733 205882 0 150 IRa 0.493827 40 69 0 12 no 1.000000 2 1.000000 NA 0.540000 66.800000 rrf rRNA rrf rrf 205883 206005 1 123 IRa 0.432432 32 49 3 36 no 1.000000 2 1.000000 NA 0.601626 67.800000 IGS_143 igs rrf|rpoC2 rrf-rpoC2 206006 349 0 1024 IRa 0.494898 291 436 13 1 no 1.000000 2 1.000000 NA 0.574219 73.500000