primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score ycf21-pgmA_p1 ycf21-pgmA 1 GCGCACGTCTAATAGCTTCT TACATCAGACCACGGCAATG 20 20 50.0 50.0 58.2 58.0 0.3 0.0 0.181315 39543 40023 1028-1037 0.285714 58.7 ycf21-pgmA_p2 ycf21-pgmA 2 CACTGGTCATGGATTGCTGA CATTACATCAGACCACGGCA 20 20 50.0 50.0 57.9 58.0 0.0 0.0 0.141078 39543 40023 1295-1295 0.142857 44.6 ycf21-pgmA_p3 ycf21-pgmA 3 CACTGGTCATGGATTGCTGA TACATCAGACCACGGCAATG 20 20 50.0 50.0 57.9 58.0 0.0 0.0 0.141078 39543 40023 1292-1292 0.142857 44.6 ycf21-pgmA_p4 ycf21-pgmA 4 TCACTGGTCATGGATTGCTG CATTACATCAGACCACGGCA 20 20 50.0 50.0 57.9 58.0 0.0 0.0 0.141078 39543 40023 1296-1296 0.142857 44.6 ycf21-pgmA_p5 ycf21-pgmA 5 TCACTGGTCATGGATTGCTG TACATCAGACCACGGCAATG 20 20 50.0 50.0 57.9 58.0 0.0 0.0 0.141078 39543 40023 1293-1293 0.142857 44.6 apcF-trnR(ccg)_p1 apcF-trnR(ccg) 1 CTTGCTGCCGCTTCTTTAAC ATCCACTGAGTTACATGCCC 20 20 50.0 50.0 58.0 57.3 0.7 0.0 0.748536 55219 55694 669-669 0.142857 39.7 apcF-trnR(ccg)_p2 apcF-trnR(ccg) 2 TGATTTTAGCGCAGGCGTAT ATCCACTGAGTTACATGCCC 20 20 45.0 50.0 58.1 57.3 11.5 0.0 0.769535 55219 55694 949-949 0.142857 39.6 apcF-trnR(ccg)_p3 apcF-trnR(ccg) 3 TCTTGCTGCCGCTTCTTTAA ATCCACTGAGTTACATGCCC 20 20 45.0 50.0 58.1 57.3 0.7 0.0 0.826763 55219 55694 670-670 0.142857 39.1 apcF-trnR(ccg)_p4 apcF-trnR(ccg) 4 ATCTTGCTGCCGCTTCTTTA ATCCACTGAGTTACATGCCC 20 20 45.0 50.0 57.9 57.3 0.7 0.0 0.831499 55219 55694 671-671 0.142857 39.1 apcF-trnR(ccg)_p5 apcF-trnR(ccg) 5 TAATCTTGCTGCCGCTTCTT ATCCACTGAGTTACATGCCC 20 20 45.0 50.0 57.9 57.3 0.7 0.0 0.831499 55219 55694 673-673 0.142857 39.1 ssrA_p1 ssrA 1 AGGGCATGTAACTCAGTGGA CACTGATACCTGACATGGCA 20 20 50.0 50.0 58.3 57.3 0.0 0.0 1.040402 55811 56205 841-841 0.142857 37.4 ssrA_p2 ssrA 2 AAGGGCATGTAACTCAGTGG CACTGATACCTGACATGGCA 20 20 50.0 50.0 57.5 57.3 0.0 0.0 1.193888 55811 56205 842-842 0.142857 36.2 ssrA_p3 ssrA 3 AGGGCATGTAACTCAGTGGA TCACTGATACCTGACATGGC 20 20 50.0 50.0 58.3 57.0 0.0 0.0 1.331423 55811 56205 842-842 0.142857 35.1 ssrA_p4 ssrA 4 AGGGCATGTAACTCAGTGGA CACTGATACCTGACATGGCAA 20 21 50.0 47.6 58.3 58.0 0.0 1.1 1.353504 55811 56205 841-841 0.142857 34.9 ssrA_p5 ssrA 5 GGGCATGTAACTCAGTGGAT CACTGATACCTGACATGGCA 20 20 50.0 50.0 57.3 57.3 0.0 0.0 1.414628 55811 56205 840-840 0.142857 34.4 ycf80_p1 ycf80 1 AGGGCATGTAACTCAGTGGA CGTTATCGAGGACCACGTTT 20 20 50.0 50.0 58.3 58.0 0.0 11.2 0.356715 56414 57868 2741-2879 1.000000 89.1 ycf80_p2 ycf80 2 AAGGGCATGTAACTCAGTGG CGTTATCGAGGACCACGTTT 20 20 50.0 50.0 57.5 58.0 0.0 11.2 0.510201 56414 57868 2742-2842 0.857143 82.2 ycf80_p3 ycf80 3 AGGGCATGTAACTCAGTGGA GCACCTACTATACCTGCAGC 20 20 50.0 55.0 58.3 57.8 0.0 8.7 0.499756 56414 57868 2527-2582 0.571429 69.1 ycf80_p4 ycf80 4 AGGGCATGTAACTCAGTGGA TGGCACCTACTATACCTGCA 20 20 50.0 50.0 58.3 57.8 0.0 0.0 0.511871 56414 57868 2529-2584 0.571429 69.0 ycf80_p5 ycf80 5 AGGGCATGTAACTCAGTGGA GTACAAGGTGCAACAGGTCT 20 20 50.0 50.0 58.3 57.7 0.0 3.6 0.599530 56414 57868 2608-2660 0.571429 68.3 trnMe(cat)_p1 trnMe(cat) 1 TTCCAAGCTAATGATGCGGG CAGGAAGAACGAGCATTTGC 20 20 50.0 50.0 58.3 57.7 0.0 0.0 0.574253 66168 67658 2122-2387 0.714286 76.0 trnMe(cat)_p2 trnMe(cat) 2 GCTAATGATGCGGGTTCGAT CAGGAAGAACGAGCATTTGC 20 20 50.0 50.0 58.5 57.7 0.0 0.0 0.740466 66168 67658 2116-2381 0.714286 74.6 trnMe(cat)_p3 trnMe(cat) 3 CCAAGCTAATGATGCGGGTT CAGGAAGAACGAGCATTTGC 20 20 50.0 50.0 58.6 57.7 0.0 0.0 0.860803 66168 67658 2120-2385 0.714286 73.7 trnMe(cat)_p4 trnMe(cat) 4 AATGATGCGGGTTCGATTCC CAGGAAGAACGAGCATTTGC 20 20 50.0 50.0 58.7 57.7 0.0 0.0 0.944394 66168 67658 2113-2378 0.714286 73.0 trnMe(cat)_p5 trnMe(cat) 5 AAGCTAATGATGCGGGTTCG CAGGAAGAACGAGCATTTGC 20 20 50.0 50.0 58.7 57.7 0.0 0.0 0.953851 66168 67658 2118-2383 0.714286 72.9 orf244_p1 orf244 1 TATGCATCTGGCTGGATTCG AAAATGCAGACGTATTGCGC 20 20 50.0 45.0 57.8 58.1 0.2 16.8 0.279312 66324 67058 955-1185 0.857143 83.5 orf244_p2 orf244 2 TATGCATCTGGCTGGATTCG CTACTAAGCATCTGTGGCCG 20 20 50.0 55.0 57.8 58.1 0.2 0.0 0.316272 66324 67058 1499-1627 0.285714 56.9 orf244_p3 orf244 3 ACCAGCGACGTCCTTTTAAG AAAATGCAGACGTATTGCGC 20 20 50.0 45.0 58.2 58.1 10.6 16.8 0.312943 66324 67058 934-934 0.142857 43.2 orf244_p4 orf244 4 GAACCAGCGACGTCCTTTTA AAAATGCAGACGTATTGCGC 20 20 50.0 45.0 58.2 58.1 10.6 16.8 0.317936 66324 67058 936-936 0.142857 43.2 orf244_p5 orf244 5 AACCAGCGACGTCCTTTTAA AAAATGCAGACGTATTGCGC 20 20 45.0 45.0 57.8 58.1 10.6 16.8 0.348551 66324 67058 935-935 0.142857 42.9 orf244-trnMe(cat)_p1 orf244-trnMe(cat) 1 AGAGGGCAACGACTGAATTC CTACTAAGCATCTGTGGCCG 20 20 50.0 55.0 57.9 58.1 0.0 0.0 0.242513 67059 67620 1159-1159 0.142857 43.8 orf244-trnMe(cat)_p2 orf244-trnMe(cat) 2 GAGGGCAACGACTGAATTCT CTACTAAGCATCTGTGGCCG 20 20 50.0 55.0 57.9 58.1 7.1 0.0 0.242513 67059 67620 1158-1158 0.142857 43.8 orf244-trnMe(cat)_p3 orf244-trnMe(cat) 3 AGAGGGCAACGACTGAATTC CAGGAAGAACGAGCATTTGC 20 20 50.0 50.0 57.9 57.7 0.0 0.0 0.353997 67059 67620 1761-1761 0.142857 42.9 orf244-trnMe(cat)_p4 orf244-trnMe(cat) 4 GAGGGCAACGACTGAATTCT CAGGAAGAACGAGCATTTGC 20 20 50.0 50.0 57.9 57.7 7.1 0.0 0.353997 67059 67620 1760-1760 0.142857 42.9 orf244-trnMe(cat)_p5 orf244-trnMe(cat) 5 GAGGGCAACGACTGAATTCT TACTAAGCATCTGTGGCCGA 20 20 50.0 50.0 57.9 58.5 7.1 0.0 0.619815 67059 67620 1157-1157 0.142857 40.8 orf692_p1 orf692 1 CGGTTTGATAACGCGATACC AACGACCCGTCAAGAAATCC 20 20 50.0 50.0 57.1 58.2 15.9 0.0 1.112134 68643 70721 2867-2884 0.428571 56.2 orf692_p2 orf692 2 CGGTTTGATAACGCGATACC CGACCCGTCAAGAAATCCAA 20 20 50.0 50.0 57.1 58.2 15.9 0.0 1.113401 68643 70721 2865-2882 0.428571 56.2 orf692_p3 orf692 3 TGTTACGGTTTGATAACGCG AACGACCCGTCAAGAAATCC 20 20 45.0 50.0 56.9 58.2 3.5 0.0 1.332923 68643 70721 2872-2889 0.428571 54.5 orf692_p4 orf692 4 TGTTACGGTTTGATAACGCG CGACCCGTCAAGAAATCCAA 20 20 45.0 50.0 56.9 58.2 3.5 0.0 1.334190 68643 70721 2870-2887 0.428571 54.5 orf692_p5 orf692 5 TGTTACGGTTTGATAACGCGA AACGACCCGTCAAGAAATCC 21 20 42.9 50.0 58.3 58.2 15.9 0.0 1.524920 68643 70721 2872-2889 0.428571 52.9 trnL(caa)-sufB_p1 trnL(caa)-sufB 1 TGCGTATACCAATTTCGCCA TACCCCATGTTGGTTCTTGC 20 20 45.0 50.0 58.0 58.1 0.0 9.2 0.107717 72849 73690 1099-1125 0.857143 83.9 trnL(caa)-sufB_p2 trnL(caa)-sufB 2 ACCAATTTCGCCATCTACCC TACCCCATGTTGGTTCTTGC 20 20 50.0 50.0 57.9 58.1 0.0 9.2 0.134910 72849 73690 1092-1118 0.857143 83.7 trnL(caa)-sufB_p3 trnL(caa)-sufB 3 TGCGTATACCAATTTCGCCA TAATTCGAGTGGACAGCGTG 20 20 45.0 50.0 58.0 58.0 0.0 0.0 0.034789 72849 73690 1505-1505 0.142857 45.4 trnL(caa)-sufB_p4 trnL(caa)-sufB 4 ACCAATTTCGCCATCTACCC TAATTCGAGTGGACAGCGTG 20 20 50.0 50.0 57.9 58.0 0.0 0.0 0.061983 72849 73690 1498-1498 0.142857 45.2 trnL(caa)-sufB_p5 trnL(caa)-sufB 5 GAAGGTCTAGCAGACGAAGC TAATTCGAGTGGACAGCGTG 20 20 55.0 50.0 58.1 58.0 9.3 0.0 0.093249 72849 73690 1820-1820 0.142857 45.0 acpP-ycf45_p1 acpP-ycf45 1 GGAGAGGTGGTAGAGTTGGT CGAAACGTAGAGGGTCACAA 20 20 55.0 50.0 58.1 57.6 0.0 0.0 0.487252 112648 112938 1350-1356 0.428571 63.4 acpP-ycf45_p2 acpP-ycf45 2 GGAGAGGTGGTAGAGTTGGT ATGAAGCGAAACGTAGAGGG 20 20 55.0 50.0 58.1 57.7 0.0 0.0 0.355273 112648 112938 1356-1362 0.285714 58.7 acpP-ycf45_p3 acpP-ycf45 3 AAATCCTGGTCGTGAAGGTG ATGAAGCGAAACGTAGAGGG 20 20 50.0 50.0 57.8 57.7 0.0 0.0 0.480257 112648 112938 1672-1689 0.285714 58.5 acpP-ycf45_p4 acpP-ycf45 4 GGAGAGGTGGTAGAGTTGGT GAAGCGAAACGTAGAGGGTC 20 20 55.0 55.0 58.1 58.4 0.0 0.0 0.433273 112648 112938 1354-1360 0.285714 58.1 acpP-ycf45_p5 acpP-ycf45 5 CACCCTCTCCGTCCTTCATA ATGAAGCGAAACGTAGAGGG 20 20 55.0 50.0 58.2 57.7 0.0 0.0 0.518591 112648 112938 1287-1287 0.142857 41.6 dnaB_p1 dnaB 1 TCAGTCCACTGCTCTACCAA CAGACATTGCAACTCCTGGT 20 20 50.0 50.0 58.0 58.1 1.5 0.0 0.108091 151249 153054 2410-2510 0.571429 73.6 dnaB_p2 dnaB 2 TCCACTGCTCTACCAACTGA CAGACATTGCAACTCCTGGT 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.108091 151249 153054 2406-2506 0.571429 73.6 dnaB_p3 dnaB 3 TTCAGTCCACTGCTCTACCA CAGACATTGCAACTCCTGGT 20 20 50.0 50.0 58.0 58.1 1.5 0.0 0.108091 151249 153054 2411-2511 0.571429 73.6 dnaB_p4 dnaB 4 AGTCCACTGCTCTACCAACT CAGACATTGCAACTCCTGGT 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.115314 151249 153054 2408-2508 0.571429 73.5 dnaB_p5 dnaB 5 TTTGAACTGGTGACACGAGG CAGACATTGCAACTCCTGGT 20 20 50.0 50.0 58.1 58.1 20.1 0.0 0.150305 151249 153054 2434-2534 0.571429 73.2 ntcA_p1 ntcA 1 CTGCCCAGTAGCCAATTTGA TCCCGTCATTCGCCCTTATA 20 20 50.0 50.0 58.2 58.3 0.0 0.0 0.454782 158174 158836 1884-1887 0.571429 67.3 ntcA_p2 ntcA 2 GGTACTGCTTCAGGAACACC TCCCGTCATTCGCCCTTATA 20 20 55.0 50.0 58.2 58.3 0.0 0.0 0.483210 158174 158836 1918-1921 0.571429 67.0 ntcA_p3 ntcA 3 GGTGGTACGTACTTGCTTGT TCCCGTCATTCGCCCTTATA 20 20 50.0 50.0 57.8 58.3 24.1 0.0 0.452221 158174 158836 1525-1528 0.428571 61.5 ntcA_p4 ntcA 4 GGCAGACCATCGGTGAATAG TCCCGTCATTCGCCCTTATA 20 20 55.0 50.0 58.1 58.3 0.0 0.0 0.421814 158174 158836 1712-1712 0.142857 42.3 ntcA_p5 ntcA 5 GGCAGACCATCGGTGAATAG CCCGTCATTCGCCCTTATAA 20 20 55.0 50.0 58.1 57.5 0.0 0.0 0.665681 158174 158836 1711-1711 0.142857 40.4 rps1-syfB_p1 rps1-syfB 1 ACAGGCTGTTGGAAGACCTA TGGTCAGAAGATGGACAAGA 20 20 50.0 45.0 58.3 55.8 15.9 0.0 2.488961 160666 161109 1221-1221 0.142857 25.8 rps1-syfB_p2 rps1-syfB 2 ACAGGCTGTTGGAAGACCTA TGGTCAGAAGATGGACAAGAA 20 21 50.0 42.9 58.3 56.6 15.9 0.0 2.696019 160666 161109 1221-1221 0.142857 24.1 rps1-syfB_p3 rps1-syfB 3 TAACAGGCTGTTGGAAGACC TGGTCAGAAGATGGACAAGA 20 20 50.0 45.0 57.4 55.8 36.4 0.0 2.780025 160666 161109 1223-1223 0.142857 23.5 rps1-syfB_p4 rps1-syfB 4 ACAGGCTGTTGGAAGACCTA ATGGTCAGAAGATGGACAAGA 20 21 50.0 42.9 58.3 56.4 15.9 0.0 2.919810 160666 161109 1222-1222 0.142857 22.4 rps1-syfB_p5 rps1-syfB 5 ACAGGCTGTTGGAAGACCTA TGGTCAGAAGATGGACAAGAAA 20 22 50.0 40.9 58.3 57.3 15.9 0.0 2.975523 160666 161109 1221-1221 0.142857 21.9 syfB_p1 syfB 1 TTGAGGAAAGTCCGGTCTCT CTCGAAGATGAAGAAGGGGC 20 20 50.0 55.0 58.0 58.1 0.0 0.0 0.064377 161110 163260 2751-2751 0.142857 45.2 syfB_p2 syfB 2 GGTGCATTAAGAGCGTACCA CTCGAAGATGAAGAAGGGGC 20 20 50.0 55.0 58.0 58.1 0.0 0.0 0.071797 161110 163260 2636-2636 0.142857 45.1 syfB_p3 syfB 3 GTGCCACAGAAATAAACCGC CTCGAAGATGAAGAAGGGGC 20 20 50.0 55.0 58.0 58.1 0.0 0.0 0.076067 161110 163260 2680-2680 0.142857 45.1 syfB_p4 syfB 4 TTGAGGAAAGTCCGGTCTCT CGAAGATGAAGAAGGGGCAA 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.124983 161110 163260 2749-2749 0.142857 44.7 syfB_p5 syfB 5 GGTGCATTAAGAGCGTACCA CGAAGATGAAGAAGGGGCAA 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.132402 161110 163260 2634-2634 0.142857 44.7 trnR(acg)-groEL_p1 trnR(acg)-groEL 1 TGAACATTCCAGTGCGTTCA GATTTGTACCAGCCGCTACA 20 20 45.0 50.0 58.0 58.0 10.0 0.0 0.058125 165325 165373 976-976 0.142857 45.2 trnR(acg)-groEL_p2 trnR(acg)-groEL 2 GATCCACTGAGCTACAAGCC GATTTGTACCAGCCGCTACA 20 20 55.0 50.0 58.1 58.0 0.0 0.0 0.071797 165325 165373 404-404 0.142857 45.1 trnR(acg)-groEL_p3 trnR(acg)-groEL 3 ATACTTGCTGTGCCTTCTGG GATTTGTACCAGCCGCTACA 20 20 50.0 50.0 57.9 58.0 0.0 0.0 0.138343 165325 165373 762-762 0.142857 44.6 trnR(acg)-groEL_p4 trnR(acg)-groEL 4 TTTAAATCGGGCAAGGAGGG GATTTGTACCAGCCGCTACA 20 20 50.0 50.0 57.9 58.0 0.0 0.0 0.156352 165325 165373 464-464 0.142857 44.5 trnR(acg)-groEL_p5 trnR(acg)-groEL 5 TGTGCCTTCTGGTCTCAATG GATTTGTACCAGCCGCTACA 20 20 50.0 50.0 57.8 58.0 0.0 0.0 0.208136 165325 165373 754-754 0.142857 44.0 groEL-ycf65_p1 groEL-ycf65 1 AAAGGTTACCCGTTCTGCTG GGTGCACAAATGACACCAAA 20 20 50.0 45.0 58.1 57.4 0.0 20.4 0.701137 166958 167499 985-1005 0.428571 61.2 groEL-ycf65_p2 groEL-ycf65 2 AGCAAAGGTTACCCGTTCTG GGTGCACAAATGACACCAAA 20 20 50.0 45.0 58.1 57.4 0.0 20.4 0.701137 166958 167499 988-1008 0.428571 61.2 groEL-ycf65_p3 groEL-ycf65 3 CAAAGGTTACCCGTTCTGCT GGTGCACAAATGACACCAAA 20 20 50.0 45.0 58.1 57.4 0.0 20.4 0.701137 166958 167499 986-1006 0.428571 61.2 groEL-ycf65_p4 groEL-ycf65 4 CAGCAAAGGTTACCCGTTCT GGTGCACAAATGACACCAAA 20 20 50.0 45.0 58.1 57.4 0.0 20.4 0.701137 166958 167499 989-1009 0.428571 61.2 groEL-ycf65_p5 groEL-ycf65 5 GTTACCCGTTCTGCTGTTCA GGTGCACAAATGACACCAAA 20 20 50.0 45.0 58.1 57.4 0.0 20.4 0.719648 166958 167499 1001-1001 0.142857 40.0 orf193_p1 orf193 1 CATGGGTATTGTTCCTCGGA GTCACTTATGGCATGCAGGA 20 20 50.0 50.0 57.0 58.0 0.0 21.4 1.043071 168405 168986 1216-1216 0.428571 56.0 orf193_p2 orf193 2 TCATGGGTATTGTTCCTCGG GTCACTTATGGCATGCAGGA 20 20 50.0 50.0 57.0 58.0 0.0 21.4 1.043071 168405 168986 1217-1217 0.428571 56.0 orf193_p3 orf193 3 CATGGGTATTGTTCCTCGGA TCAACCTTGGCAAGAACGAA 20 20 50.0 45.0 57.0 58.0 0.0 28.2 1.045946 168405 168986 1383-1383 0.428571 55.8 orf193_p4 orf193 4 CATGGGTATTGTTCCTCGGA TTCAACCTTGGCAAGAACGA 20 20 50.0 45.0 57.0 58.0 0.0 28.2 1.045946 168405 168986 1384-1384 0.428571 55.8 orf193_p5 orf193 5 TCATGGGTATTGTTCCTCGG TCAACCTTGGCAAGAACGAA 20 20 50.0 45.0 57.0 58.0 0.0 28.2 1.045946 168405 168986 1384-1384 0.428571 55.8 psbD-ompR_p1 psbD-ompR 1 GTCGCTCCATGAATAGCACA TGAAGATGACCCAAGCAACC 20 20 50.0 50.0 58.1 58.1 13.0 0.0 0.150326 171705 172232 1263-1263 0.142857 44.5 psbD-ompR_p2 psbD-ompR 2 CAACTCCAAAGCTAGGTGCA TGAAGATGACCCAAGCAACC 20 20 50.0 50.0 58.1 58.1 0.0 0.0 0.194081 171705 172232 1139-1139 0.142857 44.2 psbD-ompR_p3 psbD-ompR 3 TGAACTGGCCAATCCATGAG TGAAGATGACCCAAGCAACC 20 20 50.0 50.0 57.9 58.1 7.0 0.0 0.223582 171705 172232 811-811 0.142857 43.9 psbD-ompR_p4 psbD-ompR 4 GAACTGGCCAATCCATGAGT TGAAGATGACCCAAGCAACC 20 20 50.0 50.0 57.9 58.1 7.0 0.0 0.225089 171705 172232 810-810 0.142857 43.9 psbD-ompR_p5 psbD-ompR 5 GTCGCTCCATGAATAGCACA TAGTAAGTCGTGCGGGAGAA 20 20 50.0 50.0 58.1 58.2 13.0 0.0 0.234935 171705 172232 1390-1390 0.142857 43.8