feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH(GUG) tRNA trnH(GUG) trnH(GUG) 97 170 -1 74 LSC 0.000000 0 0 2 3 no 0.000000 1 0.000000 NA 1.000000 18.900000 IGS_001 igs trnH(GUG)|psbA trnH(GUG)-psbA 171 594 0 424 LSC 0.029851 12 22 76 300 no 1.000000 2 1.000000 NA 0.948113 67.500000 psbA gene psbA psbA 595 1656 -1 1062 LSC 0.002825 3 0 161 10 no 1.000000 2 1.000000 NA 1.000000 46.100000 IGS_002 igs psbA|trnK(UUU) psbA-trnK(UUU) 1657 1870 0 214 LSC 0.014019 3 0 257 175 no 1.000000 2 1.000000 NA 1.000000 58.700000 trnK(UUU)_part2 tRNA trnK(UUU) trnK(UUU) 1871 1905 -1 35 LSC 0.000000 0 0 3 140 no 0.000000 1 0.000000 NA 1.000000 19.000000 matK gene matK matK 2146 3675 -1 1530 LSC 0.005229 8 0 4 8 no 1.000000 2 1.000000 NA 1.000000 47.000000 IGS_005 igs matK|trnK(UUU) matK-trnK(UUU) 3676 4403 0 728 LSC 0.007003 5 14 131 49 no 1.000000 2 1.000000 NA 0.980769 53.300000 trnK(UUU)_part1 tRNA trnK(UUU) trnK(UUU) 4404 4440 -1 37 LSC 0.000000 0 0 300 12 no 0.000000 1 0.000000 NA 1.000000 19.700000 IGS_006 igs trnK(UUU)|rps16 trnK(UUU)-rps16 4441 5133 0 693 LSC 0.017391 12 3 300 65 no 1.000000 2 1.000000 NA 0.995671 59.000000 rps16 gene rps16 rps16 5134 6222 -1 1089 LSC 0.006428 7 0 26 140 no 1.000000 2 1.000000 NA 1.000000 49.400000 IGS_007 igs rps16|trnQ(UUG) rps16-trnQ(UUG) 6223 7315 0 1093 LSC 0.017512 19 8 300 135 no 1.000000 2 1.000000 NA 0.992681 64.600000 trnQ(UUG) tRNA trnQ(UUG) trnQ(UUG) 7316 7387 -1 72 LSC 0.000000 0 0 31 63 no 0.000000 1 0.000000 NA 1.000000 21.100000 IGS_008 igs trnQ(UUG)|psbK trnQ(UUG)-psbK 7388 7732 0 345 LSC 0.005797 2 0 103 262 no 1.000000 2 1.000000 NA 1.000000 49.500000 psbK gene psbK psbK 7733 7918 1 186 LSC 0.000000 0 0 280 76 no 0.000000 1 0.000000 NA 1.000000 24.400000 IGS_009 igs psbK|psbI psbK-psbI 7919 8276 0 358 LSC 0.011173 4 0 300 98 no 1.000000 2 1.000000 NA 1.000000 52.500000 psbI gene psbI psbI 8277 8387 1 111 LSC 0.009009 1 0 26 16 no 1.000000 2 1.000000 NA 1.000000 43.900000 IGS_010 igs psbI|trnS(GCU) psbI-trnS(GCU) 8388 8505 0 118 LSC 0.008475 1 0 12 93 no 1.000000 2 1.000000 NA 1.000000 43.300000 trnS(GCU) tRNA trnS(GCU) trnS(GCU) 8506 8593 -1 88 LSC 0.000000 0 0 101 5 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_011 igs trnS(GCU)|trnR(UCU) trnS(GCU)-trnR(UCU) 8594 10152 0 1559 LSC 0.009073 14 16 189 152 no 1.000000 2 1.000000 NA 0.989737 61.200000 trnR(UCU) tRNA trnR(UCU) trnR(UCU) 10153 10224 1 72 LSC 0.000000 0 0 30 80 no 0.000000 1 0.000000 NA 1.000000 21.000000 IGS_012 igs trnR(UCU)|atpA trnR(UCU)-atpA 10225 10351 0 127 LSC 0.008264 1 6 102 51 no 1.000000 2 1.000000 NA 0.952756 50.600000 atpA gene atpA atpA 10352 11875 -1 1524 LSC 0.003937 6 0 46 296 no 1.000000 2 1.000000 NA 1.000000 49.400000 IGS_013 igs atpA|atpF atpA-atpF 11876 11930 0 55 LSC 0.000000 0 1 91 241 no 1.000000 2 1.000000 NA 0.981818 46.100000 atpF gene atpF atpF 11931 13183 -1 1253 LSC 0.007981 10 0 146 97 no 1.000000 2 1.000000 NA 1.000000 55.600000 IGS_014 igs atpF|atpH atpF-atpH 13184 13588 0 405 LSC 0.017284 7 0 260 300 no 1.000000 2 1.000000 NA 1.000000 64.600000 atpH gene atpH atpH 13589 13834 -1 246 LSC 0.000000 0 0 31 75 no 0.000000 1 0.000000 NA 1.000000 21.100000 IGS_015 igs atpH|atpI atpH-atpI 13835 14813 0 979 LSC 0.011435 11 17 277 300 no 1.000000 2 1.000000 NA 0.982635 67.000000 atpI gene atpI atpI 14814 15557 -1 744 LSC 0.000000 0 0 46 99 no 0.000000 1 0.000000 NA 1.000000 28.400000 IGS_016 igs atpI|rps2 atpI-rps2 15558 15773 0 216 LSC 0.009259 2 0 300 48 no 1.000000 2 1.000000 NA 1.000000 46.400000 rps2 gene rps2 rps2 15774 16484 -1 711 LSC 0.004219 3 0 82 17 no 1.000000 2 1.000000 NA 1.000000 47.500000 IGS_017 igs rps2|rpoC2 rps2-rpoC2 16485 16703 0 219 LSC 0.022936 5 1 300 300 no 1.000000 2 1.000000 NA 0.995434 66.100000 rpoC2 gene rpoC2 rpoC2 16704 20870 -1 4167 LSC 0.003600 15 0 0 300 no 1.000000 2 1.000000 NA 1.000000 40.900000 IGS_018 igs rpoC2|rpoC1 rpoC2-rpoC1 20871 21028 0 158 LSC 0.000000 0 0 50 231 no 0.000000 1 0.000000 NA 1.000000 22.500000 rpoC1 gene rpoC1 rpoC1 21029 23812 -1 2784 LSC 0.001796 5 0 208 300 no 1.000000 2 1.000000 NA 1.000000 57.100000 IGS_019 igs rpoC1|rpoB rpoC1-rpoB 23813 23838 0 26 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpoB gene rpoB rpoB 23839 27051 -1 3213 LSC 0.000934 3 0 300 3 no 1.000000 2 1.000000 NA 1.000000 41.100000 IGS_020 igs rpoB|trnC(GCA) rpoB-trnC(GCA) 27052 28354 0 1303 LSC 0.011067 14 38 300 202 no 1.000000 2 1.000000 NA 0.970837 67.900000 trnC(GCA) tRNA trnC(GCA) trnC(GCA) 28355 28426 1 72 LSC 0.000000 0 0 34 130 no 0.000000 1 0.000000 NA 1.000000 21.300000 IGS_021 igs trnC(GCA)|petN trnC(GCA)-petN 28427 29086 0 660 LSC 0.009091 6 0 106 177 no 1.000000 2 1.000000 NA 1.000000 56.900000 petN gene petN petN 29087 29176 1 90 LSC 0.000000 0 0 152 87 no 0.000000 1 0.000000 NA 1.000000 25.300000 IGS_022 igs petN|psbM petN-psbM 29177 30238 0 1062 LSC 0.007561 8 4 242 300 no 1.000000 2 1.000000 NA 0.996234 63.500000 psbM gene psbM psbM 30239 30343 -1 105 LSC 0.000000 0 0 25 282 no 0.000000 1 0.000000 NA 1.000000 20.600000 IGS_023 igs psbM|trnD(GUC) psbM-trnD(GUC) 30344 31391 0 1048 LSC 0.020212 21 9 130 144 no 1.000000 2 1.000000 NA 0.991412 65.900000 trnD(GUC) tRNA trnD(GUC) trnD(GUC) 31392 31465 -1 74 LSC 0.000000 0 0 35 70 no 0.000000 1 0.000000 NA 1.000000 21.400000 IGS_024 igs trnD(GUC)|trnY(GUA) trnD(GUC)-trnY(GUA) 31466 31573 0 108 LSC 0.009259 1 0 109 93 no 1.000000 2 1.000000 NA 1.000000 49.800000 trnY(GUA) tRNA trnY(GUA) trnY(GUA) 31574 31657 -1 84 LSC 0.000000 0 0 37 9 no 0.000000 1 0.000000 NA 1.000000 19.400000 IGS_025 igs trnY(GUA)|trnE(UUC) trnY(GUA)-trnE(UUC) 31658 31716 0 59 LSC 0.016949 1 0 121 155 no 1.000000 2 1.000000 NA 1.000000 56.300000 trnE(UUC) tRNA trnE(UUC) trnE(UUC) 31717 31789 -1 73 LSC 0.000000 0 0 49 82 no 0.000000 1 0.000000 NA 1.000000 22.400000 IGS_026 igs trnE(UUC)|trnT(GGU) trnE(UUC)-trnT(GGU) 31790 32630 0 841 LSC 0.009581 8 6 122 90 no 1.000000 2 1.000000 NA 0.992866 56.700000 trnT(GGU) tRNA trnT(GGU) trnT(GGU) 32631 32702 1 72 LSC 0.000000 0 0 55 18 no 0.000000 1 0.000000 NA 1.000000 20.100000 IGS_027 igs trnT(GGU)|psbD trnT(GGU)-psbD 32703 33799 0 1097 LSC 0.007306 8 2 127 300 no 1.000000 2 1.000000 NA 0.998177 57.700000 psbD gene psbD psbD 33800 34861 1 1062 LSC 0.000942 1 0 137 300 no 1.000000 2 1.000000 NA 1.000000 54.600000 psbC gene psbC psbC 34845 36230 1 1386 LSC 0.000722 1 0 300 15 no 1.000000 2 1.000000 NA 1.000000 45.300000 IGS_029 igs psbC|trnS(UGA) psbC-trnS(UGA) 36231 36470 0 240 LSC 0.012658 3 3 300 300 no 1.000000 2 1.000000 NA 0.987500 61.000000 trnS(UGA) tRNA trnS(UGA) trnS(UGA) 36471 36563 -1 93 LSC 0.000000 0 0 147 300 no 0.000000 1 0.000000 NA 1.000000 29.800000 IGS_030 igs trnS(UGA)|psbZ trnS(UGA)-psbZ 36564 36912 0 349 LSC 0.000000 0 0 240 269 no 0.000000 1 0.000000 NA 1.000000 34.800000 psbZ gene psbZ psbZ 36913 37101 1 189 LSC 0.000000 0 0 300 80 no 0.000000 1 0.000000 NA 1.000000 24.800000 IGS_031 igs psbZ|trnG(GCC) psbZ-trnG(GCC) 37102 37377 0 276 LSC 0.007246 2 0 300 205 no 1.000000 2 1.000000 NA 1.000000 56.700000 trnG(GCC) tRNA trnG(GCC) trnG(GCC) 37378 37448 1 71 LSC 0.000000 0 0 167 134 no 0.000000 1 0.000000 NA 1.000000 28.800000 IGS_032 igs trnG(GCC)|trnM(CAU) trnG(GCC)-trnM(CAU) 37449 37683 0 235 LSC 0.004255 1 0 238 250 no 1.000000 2 1.000000 NA 1.000000 54.900000 trnM(CAU) tRNA trnM(CAU) trnM(CAU) 37684 37757 -1 74 LSC 0.000000 0 0 100 176 no 0.000000 1 0.000000 NA 1.000000 26.200000 IGS_033 igs trnM(CAU)|rps14 trnM(CAU)-rps14 37758 37906 0 149 LSC 0.000000 0 0 174 27 no 0.000000 1 0.000000 NA 1.000000 20.800000 rps14 gene rps14 rps14 37907 38209 -1 303 LSC 0.003300 1 0 300 118 no 1.000000 2 1.000000 NA 1.000000 48.300000 IGS_034 igs rps14|psaB rps14-psaB 38210 38335 0 126 LSC 0.008197 1 4 275 129 no 1.000000 2 1.000000 NA 0.968254 54.900000 psaB gene psaB psaB 38336 40540 -1 2205 LSC 0.000907 2 0 7 300 no 1.000000 2 1.000000 NA 1.000000 43.300000 IGS_035 igs psaB|psaA psaB-psaA 40541 40565 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psaA gene psaA psaA 40566 42818 -1 2253 LSC 0.000444 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 57.400000 IGS_036 igs psaA|ycf3 psaA-ycf3 42819 43649 0 831 LSC 0.014778 12 19 300 231 no 1.000000 2 1.000000 NA 0.977136 69.400000 ycf3 gene ycf3 ycf3 43650 45656 -1 2007 LSC 0.002503 5 9 4 183 no 1.000000 2 1.000000 NA 0.995516 44.900000 IGS_037 igs ycf3|trnS(GGA) ycf3-trnS(GGA) 45657 46507 0 851 LSC 0.010619 6 286 300 152 no 1.000000 2 1.000000 NA 0.663925 57.600000 trnS(GGA) tRNA trnS(GGA) trnS(GGA) 46508 46594 1 87 LSC 0.000000 0 0 84 65 no 0.000000 1 0.000000 NA 1.000000 23.600000 IGS_038 igs trnS(GGA)|rps4 trnS(GGA)-rps4 46595 46924 0 330 LSC 0.009091 3 0 171 300 no 1.000000 2 1.000000 NA 1.000000 56.200000 rps4 gene rps4 rps4 46925 47530 -1 606 LSC 0.000000 0 0 115 53 no 0.000000 1 0.000000 NA 1.000000 29.000000 IGS_039 igs rps4|trnT(UGU) rps4-trnT(UGU) 47531 47900 0 370 LSC 0.011080 4 9 300 83 no 1.000000 2 1.000000 NA 0.975676 53.900000 trnT(UGU) tRNA trnT(UGU) trnT(UGU) 47901 47973 -1 73 LSC 0.000000 0 0 79 10 no 0.000000 1 0.000000 NA 1.000000 19.500000 IGS_040 igs trnT(UGU)|trnF(GAA) trnT(UGU)-trnF(GAA) 47974 49647 0 1674 LSC 0.012766 21 29 152 2 no 1.000000 2 1.000000 NA 0.982676 52.500000 trnF(GAA) tRNA trnF(GAA) trnF(GAA) 49648 49720 1 73 LSC 0.013699 1 0 2 212 no 1.000000 2 1.000000 NA 1.000000 45.500000 IGS_041 igs trnF(GAA)|ndhJ trnF(GAA)-ndhJ 49721 50389 0 669 LSC 0.006024 4 5 70 192 no 1.000000 2 1.000000 NA 0.992526 53.200000 ndhJ gene ndhJ ndhJ 50390 50866 -1 477 LSC 0.004193 2 0 252 86 no 1.000000 2 1.000000 NA 1.000000 50.000000 IGS_042 igs ndhJ|ndhK ndhJ-ndhK 50867 50971 0 105 LSC 0.019048 2 0 42 219 no 1.000000 2 1.000000 NA 1.000000 51.600000 ndhK gene ndhK ndhK 50972 51649 -1 678 LSC 0.002950 2 0 9 300 no 1.000000 2 1.000000 NA 1.000000 46.100000 IGS_043 igs ndhK|ndhC ndhK-ndhC 51650 51705 0 56 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 ndhC gene ndhC ndhC 51706 52068 -1 363 LSC 0.002755 1 0 300 172 no 1.000000 2 1.000000 NA 1.000000 53.300000 IGS_044 igs ndhC|trnM(CAU) ndhC-trnM(CAU) 52069 53987 0 1919 LSC 0.010433 20 2 17 100 no 1.000000 2 1.000000 NA 0.998958 50.300000 trnM(CAU) tRNA trnM(CAU) trnM(CAU) 53988 54060 1 73 LSC 0.000000 0 0 165 27 no 0.000000 1 0.000000 NA 1.000000 20.800000 IGS_045 igs trnM(CAU)|atpE trnM(CAU)-atpE 54061 54281 0 221 LSC 0.004525 1 0 238 300 no 1.000000 2 1.000000 NA 1.000000 55.100000 atpE gene atpE atpE 54282 54683 -1 402 LSC 0.000000 0 0 193 300 no 0.000000 1 0.000000 NA 1.000000 35.400000 atpB gene atpB atpB 54680 56176 -1 1497 LSC 0.000668 1 0 300 155 no 1.000000 2 1.000000 NA 1.000000 55.800000 IGS_047 igs atpB|rbcL atpB-rbcL 56177 57004 0 828 LSC 0.004878 4 8 168 300 no 1.000000 2 1.000000 NA 0.990338 60.100000 rbcL gene rbcL rbcL 57005 58438 1 1434 LSC 0.002789 4 0 33 300 no 1.000000 2 1.000000 NA 1.000000 47.800000 IGS_048 igs rbcL|accD rbcL-accD 58439 59288 0 850 LSC 0.004994 4 49 119 118 no 1.000000 2 1.000000 NA 0.942353 60.100000 accD gene accD accD 59289 60767 1 1479 LSC 0.006845 10 18 189 300 no 1.000000 2 1.000000 NA 0.987830 63.000000 IGS_049 igs accD|psaI accD-psaI 60768 61519 0 752 LSC 0.003989 3 0 1 224 no 1.000000 2 1.000000 NA 1.000000 46.100000 psaI gene psaI psaI 61520 61630 1 111 LSC 0.000000 0 0 263 113 no 0.000000 1 0.000000 NA 1.000000 27.200000 IGS_050 igs psaI|ycf4 psaI-ycf4 61631 62075 0 445 LSC 0.006787 3 3 300 300 no 1.000000 2 1.000000 NA 0.993258 60.100000 ycf4 gene ycf4 ycf4 62076 62630 1 555 LSC 0.000000 0 0 211 300 no 0.000000 1 0.000000 NA 1.000000 39.100000 IGS_051 igs ycf4|cemA ycf4-cemA 62631 63411 0 781 LSC 0.004011 3 33 300 122 no 1.000000 2 1.000000 NA 0.957746 59.300000 cemA gene cemA cemA 63412 64101 1 690 LSC 0.005797 4 0 100 65 no 1.000000 2 1.000000 NA 1.000000 52.000000 IGS_052 igs cemA|petA cemA-petA 64102 64342 0 241 LSC 0.013043 3 11 60 300 no 1.000000 2 1.000000 NA 0.954357 53.800000 petA gene petA petA 64343 65305 1 963 LSC 0.002077 2 0 26 221 no 1.000000 2 1.000000 NA 1.000000 46.900000 IGS_053 igs petA|psbJ petA-psbJ 65306 66379 0 1074 LSC 0.007505 8 8 60 164 no 1.000000 2 1.000000 NA 0.992551 53.300000 psbJ gene psbJ psbJ 66380 66502 -1 123 LSC 0.000000 0 0 73 41 no 0.000000 1 0.000000 NA 1.000000 21.800000 IGS_054 igs psbJ|psbL psbJ-psbL 66503 66626 0 124 LSC 0.016129 2 0 196 115 no 1.000000 2 1.000000 NA 1.000000 55.400000 psbL gene psbL psbL 66627 66743 -1 117 LSC 0.008547 1 0 24 175 no 1.000000 2 1.000000 NA 1.000000 44.200000 IGS_055 igs psbL|psbF psbL-psbF 66744 66765 0 22 LSC 0.000000 0 0 1 153 no 0.000000 1 0.000000 NA 1.000000 18.800000 psbF gene psbF psbF 66766 66885 -1 120 LSC 0.000000 0 0 23 33 no 0.000000 1 0.000000 NA 1.000000 20.500000 IGS_056 igs psbF|psbE psbF-psbE 66886 66894 0 9 LSC 0.000000 0 0 143 24 no 0.000000 1 0.000000 NA 1.000000 20.600000 psbE gene psbE psbE 66895 67146 -1 252 LSC 0.003968 1 0 152 178 no 1.000000 2 1.000000 NA 1.000000 51.200000 IGS_057 igs psbE|petL psbE-petL 67147 68304 0 1158 LSC 0.011324 13 10 227 151 no 1.000000 2 1.000000 NA 0.991364 62.400000 petL gene petL petL 68305 68400 1 96 LSC 0.000000 0 0 18 55 no 0.000000 1 0.000000 NA 1.000000 20.100000 IGS_058 igs petL|petG petL-petG 68401 68584 0 184 LSC 0.005495 1 2 114 181 no 1.000000 2 1.000000 NA 0.989130 50.300000 petG gene petG petG 68585 68698 1 114 LSC 0.000000 0 0 128 67 no 0.000000 1 0.000000 NA 1.000000 23.800000 IGS_059 igs petG|trnW(CCA) petG-trnW(CCA) 68699 68831 0 133 LSC 0.007634 1 2 242 300 no 1.000000 2 1.000000 NA 0.984962 58.300000 trnW(CCA) tRNA trnW(CCA) trnW(CCA) 68832 68905 -1 74 LSC 0.000000 0 0 65 250 no 0.000000 1 0.000000 NA 1.000000 23.600000 IGS_060 igs trnW(CCA)|trnP(UGG) trnW(CCA)-trnP(UGG) 68906 69069 0 164 LSC 0.000000 0 0 139 86 no 0.000000 1 0.000000 NA 1.000000 25.200000 trnP(UGG) tRNA trnP(UGG) trnP(UGG) 69070 69143 -1 74 LSC 0.000000 0 0 300 12 no 0.000000 1 0.000000 NA 1.000000 19.700000 IGS_061 igs trnP(UGG)|psaJ trnP(UGG)-psaJ 69144 69578 0 435 LSC 0.009195 4 0 300 300 no 1.000000 2 1.000000 NA 1.000000 60.600000 psaJ gene psaJ psaJ 69579 69713 1 135 LSC 0.000000 0 0 118 201 no 0.000000 1 0.000000 NA 1.000000 27.600000 IGS_062 igs psaJ|rpl33 psaJ-rpl33 69714 70156 0 443 LSC 0.004515 2 0 253 116 no 1.000000 2 1.000000 NA 1.000000 51.800000 rpl33 gene rpl33 rpl33 70157 70357 1 201 LSC 0.009950 2 0 234 145 no 1.000000 2 1.000000 NA 1.000000 54.100000 IGS_063 igs rpl33|rps18 rpl33-rps18 70358 70543 0 186 LSC 0.005882 1 16 57 300 no 1.000000 2 1.000000 NA 0.913978 48.900000 rps18 gene rps18 rps18 70544 70849 1 306 LSC 0.000000 0 3 40 300 no 1.000000 2 1.000000 NA 0.990196 41.600000 IGS_064 igs rps18|rpl20 rps18-rpl20 70850 71071 0 222 LSC 0.000000 0 4 300 300 no 1.000000 2 1.000000 NA 0.981982 54.200000 rpl20 gene rpl20 rpl20 71072 71458 -1 387 LSC 0.000000 0 0 300 54 no 0.000000 1 0.000000 NA 1.000000 24.600000 IGS_065 igs rpl20|rps12 rpl20-rps12 71459 72267 0 809 LSC 0.006196 5 2 300 199 no 1.000000 2 1.000000 NA 0.997528 62.500000 rps12_part1 gene rps12 rps12 72268 72381 -1 114 LSC 0.000000 0 0 127 85 no 0.000000 1 0.000000 NA 1.000000 25.100000 IGS_066 igs rps12|clpP1 rps12-clpP1 72382 72519 0 138 LSC 0.007246 1 0 241 17 no 1.000000 2 1.000000 NA 1.000000 42.900000 clpP1 gene clpP1 clpP1 72520 74518 -1 1999 LSC 0.006021 12 6 52 113 no 1.000000 2 1.000000 NA 0.996998 50.400000 IGS_067 igs clpP1|psbB clpP1-psbB 74519 74958 0 440 LSC 0.013636 6 0 109 300 no 1.000000 2 1.000000 NA 1.000000 56.400000 psbB gene psbB psbB 74959 76485 1 1527 LSC 0.001310 2 0 88 9 no 1.000000 2 1.000000 NA 1.000000 45.100000 IGS_068 igs psbB|psbT psbB-psbT 76486 76685 0 200 LSC 0.005000 1 0 300 111 no 1.000000 2 1.000000 NA 1.000000 48.700000 psbT gene psbT psbT 76686 76790 1 105 LSC 0.000000 0 0 190 6 no 0.000000 1 0.000000 NA 1.000000 19.200000 IGS_069 igs psbT|pbf1 psbT-pbf1 76791 76863 0 73 LSC 0.013699 1 0 295 300 no 1.000000 2 1.000000 NA 1.000000 60.400000 pbf1 gene pbf1 pbf1 76864 76995 -1 132 LSC 0.000000 0 0 66 296 no 0.000000 1 0.000000 NA 1.000000 23.700000 IGS_070 igs pbf1|psbH pbf1-psbH 76996 77106 0 111 LSC 0.000000 0 0 198 185 no 0.000000 1 0.000000 NA 1.000000 32.600000 psbH gene psbH psbH 77107 77328 1 222 LSC 0.004505 1 0 300 253 no 1.000000 2 1.000000 NA 1.000000 55.100000 IGS_071 igs psbH|petB psbH-petB 77329 77457 0 129 LSC 0.000000 0 0 36 124 no 0.000000 1 0.000000 NA 1.000000 21.400000 petB gene petB petB 77458 78863 1 1406 LSC 0.003569 5 5 165 300 no 1.000000 2 1.000000 NA 0.996444 58.500000 IGS_072 igs petB|petD petB-petD 78864 79059 0 196 LSC 0.000000 0 0 300 222 no 0.000000 1 0.000000 NA 1.000000 33.800000 petD gene petD petD 79060 80290 1 1231 LSC 0.004898 6 6 300 71 no 1.000000 2 1.000000 NA 0.995126 52.400000 IGS_073 igs petD|rpoA petD-rpoA 80291 80469 0 179 LSC 0.016760 3 0 300 17 no 1.000000 2 1.000000 NA 1.000000 48.400000 rpoA gene rpoA rpoA 80470 81483 -1 1014 LSC 0.007890 8 0 20 188 no 1.000000 2 1.000000 NA 1.000000 49.800000 IGS_074 igs rpoA|rps11 rpoA-rps11 81484 81548 0 65 LSC 0.000000 0 0 149 123 no 0.000000 1 0.000000 NA 1.000000 28.000000 rps11 gene rps11 rps11 81549 81965 -1 417 LSC 0.007194 3 0 214 219 no 1.000000 2 1.000000 NA 1.000000 59.100000 IGS_075 igs rps11|rpl36 rps11-rpl36 81966 82066 0 101 LSC 0.000000 0 0 80 118 no 0.000000 1 0.000000 NA 1.000000 24.800000 rpl36 gene rpl36 rpl36 82067 82180 -1 114 LSC 0.000000 0 0 181 4 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_076 igs rpl36|rps8 rpl36-rps8 82181 82629 0 449 LSC 0.008909 4 0 295 243 no 1.000000 2 1.000000 NA 1.000000 60.700000 rps8 gene rps8 rps8 82630 83034 -1 405 LSC 0.007407 3 0 20 200 no 1.000000 2 1.000000 NA 1.000000 45.400000 IGS_077 igs rps8|rpl14 rps8-rpl14 83035 83201 0 167 LSC 0.000000 0 0 125 33 no 0.000000 1 0.000000 NA 1.000000 21.200000 rpl14 gene rpl14 rpl14 83202 83570 -1 369 LSC 0.013550 5 0 292 112 no 1.000000 2 1.000000 NA 1.000000 55.100000 IGS_078 igs rpl14|rpl16 rpl14-rpl16 83571 83700 0 130 LSC 0.007874 1 3 173 81 no 1.000000 2 1.000000 NA 0.976923 50.300000 rpl16 gene rpl16 rpl16 83701 85122 -1 1422 LSC 0.009181 13 6 17 45 no 1.000000 2 1.000000 NA 0.995781 50.700000 IGS_079 igs rpl16|rps3 rpl16-rps3 85123 85268 0 146 LSC 0.006849 1 0 58 14 no 1.000000 2 1.000000 NA 1.000000 42.500000 rps3 gene rps3 rps3 85269 85925 -1 657 LSC 0.007610 5 0 100 300 no 1.000000 2 1.000000 NA 1.000000 55.600000 rpl22 gene rpl22 rpl22 85910 86377 -1 468 LSC 0.004274 2 0 56 8 no 1.000000 2 1.000000 NA 1.000000 44.100000 IGS_081 igs rpl22|rps19 rpl22-rps19 86378 86430 0 53 LSC 0.018868 1 0 20 300 no 1.000000 2 1.000000 NA 1.000000 49.800000 rps19 gene rps19 rps19 86431 86709 -1 279 LSC 0.000000 0 0 44 300 no 0.000000 1 0.000000 NA 1.000000 22.100000 IGS_082 igs rps19|rpl2 rps19-rpl2 86710 86790 0 81 LSC 0.000000 0 10 300 300 no 1.000000 2 1.000000 NA 0.876543 55.300000 rpl2 gene rpl2 rpl2 86791 88281 -1 1491 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 40.000000 IGS_083 igs rpl2|rpl23 rpl2-rpl23 88282 88299 0 18 IRb 0.000000 0 0 300 287 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 88300 88581 -1 282 IRb 0.000000 0 0 300 5 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_084 igs rpl23|trnM(CAU) rpl23-trnM(CAU) 88582 88746 0 165 IRb 0.012121 2 0 300 128 no 1.000000 2 1.000000 NA 1.000000 54.100000 trnM(CAU) tRNA trnM(CAU) trnM(CAU) 88747 88820 -1 74 IRb 0.000000 0 0 106 54 no 0.000000 1 0.000000 NA 1.000000 22.800000 IGS_085 igs trnM(CAU)|ycf2 trnM(CAU)-ycf2 88821 88908 0 88 IRb 0.011364 1 0 180 32 no 1.000000 2 1.000000 NA 1.000000 46.400000 ycf2 gene ycf2 ycf2 88909 95802 1 6894 IRb 0.000725 5 0 33 300 no 1.000000 2 1.000000 NA 1.000000 40.400000 IGS_086 igs ycf2|trnL(CAA) ycf2-trnL(CAA) 95803 96504 0 702 IRb 0.001425 1 0 35 256 no 1.000000 2 1.000000 NA 1.000000 47.200000 trnL(CAA) tRNA trnL(CAA) trnL(CAA) 96505 96585 -1 81 IRb 0.000000 0 0 300 175 no 0.000000 1 0.000000 NA 1.000000 31.900000 IGS_087 igs trnL(CAA)|ndhB trnL(CAA)-ndhB 96586 97120 0 535 IRb 0.001869 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 58.500000 ndhB gene ndhB ndhB 97121 99332 -1 2212 IRb 0.000452 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 57.500000 IGS_088 igs ndhB|rps7 ndhB-rps7 99333 99617 0 285 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rps7 gene rps7 rps7 99618 100085 -1 468 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 37.300000 IGS_089 igs rps7|rps12 rps7-rps12 100086 100138 0 53 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rps12_part2 gene rps12 rps12 100139 100932 -1 794 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 40.000000 IGS_090 igs rps12|trnV(GAC) rps12-trnV(GAC) 100933 102541 0 1609 IRb 0.000627 1 13 300 300 no 1.000000 2 1.000000 NA 0.991920 59.700000 trnV(GAC) tRNA trnV(GAC) trnV(GAC) 102542 102613 1 72 IRb 0.000000 0 0 111 300 no 0.000000 1 0.000000 NA 1.000000 27.100000 IGS_091 igs trnV(GAC)|rrn16 trnV(GAC)-rrn16 102614 102842 0 229 IRb 0.000000 0 0 183 300 no 0.000000 1 0.000000 NA 1.000000 32.500000 rrn16 rRNA rrn16 rrn16 102843 104342 1 1500 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 40.000000 IGS_092 igs rrn16|trnI(GAU) rrn16-trnI(GAU) 104343 104642 0 300 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI(GAU)_part1 tRNA trnI(GAU) trnI(GAU) 104643 104679 1 37 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI(GAU)_part2 tRNA trnI(GAU) trnI(GAU) 105395 105429 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_095 igs trnI(GAU)|trnA(UGC) trnI(GAU)-trnA(UGC) 105430 105493 0 64 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA(UGC)_part1 tRNA trnA(UGC) trnA(UGC) 105494 105531 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA(UGC)_part2 tRNA trnA(UGC) trnA(UGC) 106218 106252 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_098 igs trnA(UGC)|rrn23 trnA(UGC)-rrn23 106253 106405 0 153 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn23 rRNA rrn23 rrn23 106406 109215 1 2810 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 37.300000 IGS_099 igs rrn23|rrn4.5 rrn23-rrn4.5 109216 109316 0 101 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn4.5 rRNA rrn4.5 rrn4.5 109317 109419 1 103 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_100 igs rrn4.5|rrn5 rrn4.5-rrn5 109420 109675 0 256 IRb 0.000000 0 0 300 184 no 0.000000 1 0.000000 NA 1.000000 32.600000 rrn5 rRNA rrn5 rrn5 109676 109796 1 121 IRb 0.000000 0 0 300 63 no 0.000000 1 0.000000 NA 1.000000 23.500000 IGS_101 igs rrn5|trnR(ACG) rrn5-trnR(ACG) 109797 110046 0 250 IRb 0.008032 2 1 300 259 no 1.000000 2 1.000000 NA 0.996000 57.500000 trnR(ACG) tRNA trnR(ACG) trnR(ACG) 110047 110125 1 79 IRb 0.000000 0 0 179 180 no 0.000000 1 0.000000 NA 1.000000 32.200000 IGS_102 igs trnR(ACG)|trnN(GUU) trnR(ACG)-trnN(GUU) 110126 110706 0 581 IRb 0.001721 1 0 258 300 no 1.000000 2 1.000000 NA 1.000000 59.300000 trnN(GUU) tRNA trnN(GUU) trnN(GUU) 110707 110778 -1 72 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_103 igs trnN(GUU)|ycf1 trnN(GUU)-ycf1 110779 111106 0 328 IRb 0.000000 0 0 300 160 no 0.000000 1 0.000000 NA 1.000000 31.300000 ycf1 gene ycf1 ycf1 111107 116776 1 5670 SSC 0.329962 1631 727 300 0 yes 1.000000 2 1.000000 NA 0.871781 75.100000 IGS_104 igs ycf1|rps15 ycf1-rps15 116777 117172 0 396 SSC 0.425150 142 62 0 0 yes 1.000000 2 1.000000 NA 0.843434 76.300000 rps15 gene rps15 rps15 117173 117436 1 264 SSC 0.465686 95 60 2 2 no 1.000000 2 1.000000 NA 0.772727 72.500000 IGS_105 igs rps15|ndhH rps15-ndhH 117437 117555 0 119 SSC 0.445545 45 18 0 1 no 1.000000 2 1.000000 NA 0.848739 74.500000 ndhH gene ndhH ndhH 117556 118737 1 1182 SSC 0.505355 519 155 2 0 yes 1.000000 2 1.000000 NA 0.868866 81.300000 IGS_106 igs ndhH|ndhA ndhH-ndhA 118738 118738 0 1 SSC 1.000000 1 0 1 1 no 1.000000 2 1.000000 NA 1.000000 72.600000 ndhA gene ndhA ndhA 118739 120953 1 2215 SSC 0.479879 954 227 0 0 yes 1.000000 2 1.000000 NA 0.897517 80.600000 IGS_107 igs ndhA|ndhI ndhA-ndhI 120954 121037 0 84 SSC 0.426471 29 16 0 0 no 1.000000 2 1.000000 NA 0.809524 73.400000 ndhI gene ndhI ndhI 121038 121541 1 504 SSC 0.452656 196 71 2 2 yes 1.000000 2 1.000000 NA 0.859127 79.200000 IGS_108 igs ndhI|ndhG ndhI-ndhG 121542 121954 0 413 SSC 0.440476 148 77 0 21 yes 1.000000 2 1.000000 NA 0.813559 75.900000 ndhG gene ndhG ndhG 121955 122485 1 531 SSC 0.441270 139 216 15 3 no 1.000000 2 1.000000 NA 0.593220 72.500000 IGS_109 igs ndhG|ndhE ndhG-ndhE 122486 122644 0 159 SSC 0.465753 68 13 1 0 yes 1.000000 2 1.000000 NA 0.918239 76.500000 ndhE gene ndhE ndhE 122645 122950 1 306 SSC 0.474638 131 30 0 5 yes 1.000000 2 1.000000 NA 0.901961 76.100000 IGS_110 igs ndhE|psaC ndhE-psaC 122951 123201 0 251 SSC 0.430556 93 35 27 35 yes 1.000000 2 1.000000 NA 0.860558 76.900000 psaC gene psaC psaC 123202 123447 1 246 SSC 0.528409 93 70 4 0 yes 1.000000 2 1.000000 NA 0.715447 70.700000 IGS_111 igs psaC|ndhD psaC-ndhD 123448 123565 0 118 SSC 0.510000 51 18 0 1 no 1.000000 2 1.000000 NA 0.847458 74.500000 ndhD gene ndhD ndhD 123566 125068 1 1503 SSC 0.466505 578 264 1 1 yes 1.000000 2 1.000000 NA 0.824351 80.100000 IGS_112 igs ndhD|ccsA ndhD-ccsA 125069 125299 0 231 SSC 0.514151 109 19 2 1 yes 1.000000 2 1.000000 NA 0.917749 76.500000 ccsA gene ccsA ccsA 125300 126241 -1 942 SSC 0.435036 298 257 0 0 yes 1.000000 2 1.000000 NA 0.727176 77.300000 IGS_113 igs ccsA|trnL(UAG) ccsA-trnL(UAG) 126242 126344 0 103 SSC 0.417476 43 0 0 1 no 1.000000 2 1.000000 NA 1.000000 72.500000 trnL(UAG) tRNA trnL(UAG) trnL(UAG) 126345 126424 -1 80 SSC 0.515152 34 14 0 0 no 1.000000 2 1.000000 NA 0.825000 73.800000 IGS_114 igs trnL(UAG)|rpl32 trnL(UAG)-rpl32 126425 127304 0 880 SSC 0.449468 338 128 0 0 yes 1.000000 2 1.000000 NA 0.854545 80.900000 rpl32 gene rpl32 rpl32 127305 127472 -1 168 SSC 0.456790 74 6 0 4 yes 1.000000 2 1.000000 NA 0.964286 76.000000 IGS_115 igs rpl32|ndhF rpl32-ndhF 127473 128238 0 766 SSC 0.443077 288 116 0 10 yes 1.000000 2 1.000000 NA 0.848564 80.700000 ndhF gene ndhF ndhF 128239 130461 1 2223 SSC 0.464635 854 385 27 2 yes 1.000000 2 1.000000 NA 0.826811 78.800000 IGS_116 igs ndhF|ycf1 ndhF-ycf1 130462 130471 0 10 SSC 0.400000 4 0 0 0 no 1.000000 2 1.000000 NA 1.000000 72.500000 ycf1 gene ycf1 ycf1 130472 131929 -1 1458 IRa 0.009602 14 0 2 300 no 1.000000 2 1.000000 NA 1.000000 49.400000 IGS_117 igs ycf1|trnN(GUU) ycf1-trnN(GUU) 131930 132257 0 328 IRa 0.000000 0 0 160 300 no 0.000000 1 0.000000 NA 1.000000 31.300000 trnN(GUU) tRNA trnN(GUU) trnN(GUU) 132258 132329 1 72 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_118 igs trnN(GUU)|trnR(ACG) trnN(GUU)-trnR(ACG) 132330 132910 0 581 IRa 0.001721 1 0 300 258 no 1.000000 2 1.000000 NA 1.000000 59.300000 trnR(ACG) tRNA trnR(ACG) trnR(ACG) 132911 132989 -1 79 IRa 0.000000 0 0 180 179 no 0.000000 1 0.000000 NA 1.000000 32.200000 IGS_119 igs trnR(ACG)|rrn5 trnR(ACG)-rrn5 132990 133239 0 250 IRa 0.008032 2 1 259 300 no 1.000000 2 1.000000 NA 0.996000 57.500000 rrn5 rRNA rrn5 rrn5 133240 133360 -1 121 IRa 0.000000 0 0 63 300 no 0.000000 1 0.000000 NA 1.000000 23.500000 IGS_120 igs rrn5|rrn4.5 rrn5-rrn4.5 133361 133616 0 256 IRa 0.000000 0 0 184 300 no 0.000000 1 0.000000 NA 1.000000 32.600000 rrn4.5 rRNA rrn4.5 rrn4.5 133617 133719 -1 103 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_121 igs rrn4.5|rrn23 rrn4.5-rrn23 133720 133820 0 101 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn23 rRNA rrn23 rrn23 133821 136630 -1 2810 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 37.300000 IGS_122 igs rrn23|trnA(UGC) rrn23-trnA(UGC) 136631 136783 0 153 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA(UGC)_part2 tRNA trnA(UGC) trnA(UGC) 136784 136818 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA(UGC)_part1 tRNA trnA(UGC) trnA(UGC) 137505 137542 -1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_125 igs trnA(UGC)|trnI(GAU) trnA(UGC)-trnI(GAU) 137543 137606 0 64 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI(GAU)_part2 tRNA trnI(GAU) trnI(GAU) 137607 137641 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI(GAU)_part1 tRNA trnI(GAU) trnI(GAU) 138357 138393 -1 37 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_128 igs trnI(GAU)|rrn16 trnI(GAU)-rrn16 138394 138693 0 300 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn16 rRNA rrn16 rrn16 138694 140193 -1 1500 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 40.000000 IGS_129 igs rrn16|trnV(GAC) rrn16-trnV(GAC) 140194 140422 0 229 IRa 0.000000 0 0 300 183 no 0.000000 1 0.000000 NA 1.000000 32.500000 trnV(GAC) tRNA trnV(GAC) trnV(GAC) 140423 140494 -1 72 IRa 0.000000 0 0 300 111 no 0.000000 1 0.000000 NA 1.000000 27.100000 IGS_130 igs trnV(GAC)|rps7 trnV(GAC)-rps7 140495 142950 0 2456 IRa 0.000409 1 13 300 300 no 1.000000 2 1.000000 NA 0.994707 57.500000 rps7 gene rps7 rps7 142951 143418 1 468 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 37.300000 IGS_131 igs rps7|ndhB rps7-ndhB 143419 143703 0 285 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 ndhB gene ndhB ndhB 143704 145915 1 2212 IRa 0.000452 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 57.500000 IGS_132 igs ndhB|trnL(CAA) ndhB-trnL(CAA) 145916 146450 0 535 IRa 0.001869 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 58.500000 trnL(CAA) tRNA trnL(CAA) trnL(CAA) 146451 146531 1 81 IRa 0.000000 0 0 175 300 no 0.000000 1 0.000000 NA 1.000000 31.900000 IGS_133 igs trnL(CAA)|ycf2 trnL(CAA)-ycf2 146532 147233 0 702 IRa 0.001425 1 0 256 35 no 1.000000 2 1.000000 NA 1.000000 47.200000 ycf2 gene ycf2 ycf2 147234 154127 -1 6894 IRa 0.000725 5 0 300 33 no 1.000000 2 1.000000 NA 1.000000 40.400000 IGS_134 igs ycf2|trnM(CAU) ycf2-trnM(CAU) 154128 154215 0 88 IRa 0.011364 1 0 32 180 no 1.000000 2 1.000000 NA 1.000000 46.400000 trnM(CAU) tRNA trnM(CAU) trnM(CAU) 154216 154289 1 74 IRa 0.000000 0 0 54 106 no 0.000000 1 0.000000 NA 1.000000 22.800000 IGS_135 igs trnM(CAU)|rpl23 trnM(CAU)-rpl23 154290 154454 0 165 IRa 0.012121 2 0 128 300 no 1.000000 2 1.000000 NA 1.000000 54.100000 rpl23 gene rpl23 rpl23 154455 154736 1 282 IRa 0.000000 0 0 5 300 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_136 igs rpl23|rpl2 rpl23-rpl2 154737 154754 0 18 IRa 0.000000 0 0 287 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl2 gene rpl2 rpl2 154755 156245 1 1491 IRa 0.000000 0 0 300 117 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_137 igs rpl2|trnH(GUG) rpl2-trnH(GUG) 156246 96 0 122 LSC 0.090909 3 89 300 77 no 1.000000 2 1.000000 NA 0.270492 59.700000