feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score matK gene matK matK 1191 2231 -1 1041 LSC 0.053518 153 0 2 12 no 1.000000 12 1.000000 0.053518 1.000000 78.900000 IGS_001 igs matK|rps16 matK-rps16 2232 3426 0 1195 LSC 0.058292 200 16 28 20 yes 1.000000 12 1.000000 0.058240 1.000000 81.900000 rps16 gene rps16 rps16 3427 4525 -1 1099 LSC 0.043495 149 49 22 11 yes 1.000000 12 1.000000 0.044281 0.977252 81.400000 IGS_002 igs rps16|trnQ-UUG rps16-trnQ-UUG 4526 6461 0 1936 LSC 0.024155 128 11 35 88 no 1.000000 12 1.000000 0.023813 0.997934 65.200000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 6462 6533 -1 72 LSC 0.002315 1 0 2 16 no 0.083333 2 0.500000 0.002315 1.000000 23.200000 IGS_003 igs trnQ-UUG|psbK trnQ-UUG-psbK 6534 6871 0 338 LSC 0.049068 47 16 74 7 yes 1.000000 12 1.000000 0.049545 1.000000 79.100000 psbK gene psbK psbK 6872 7048 1 177 LSC 0.035011 19 0 21 17 no 0.666667 10 0.800000 0.035011 1.000000 60.800000 IGS_004 igs psbK|psbI psbK-psbI 7049 7638 0 590 LSC 0.061869 101 11 30 18 yes 1.000000 12 1.000000 0.060556 0.991525 81.900000 psbI gene psbI psbI 7639 7749 1 111 LSC 0.016517 6 0 20 5 no 0.250000 6 0.500000 0.016517 1.000000 38.000000 IGS_005 igs psbI|trnS-GCU psbI-trnS-GCU 7750 7842 0 93 LSC 0.044151 12 0 12 60 no 0.583333 9 0.777778 0.044151 1.000000 63.000000 trnS-GCU tRNA trnS-GCU trnS-GCU 7843 7930 -1 88 LSC 0.003444 1 0 9 0 no 0.000000 2 0.000000 0.003444 1.000000 21.700000 IGS_006 igs trnS-GCU|ycf12 trnS-GCU-ycf12 7931 8441 0 511 LSC 0.065006 83 15 27 32 yes 1.000000 12 1.000000 0.064236 0.988258 82.200000 ycf12 gene ycf12 ycf12 8442 8543 1 102 LSC 0.013963 5 0 0 11 no 0.250000 6 0.500000 0.013963 1.000000 35.800000 IGS_007 igs ycf12|trnG-UCC ycf12-trnG-UCC 8544 8748 0 205 LSC 0.128475 68 18 26 29 no 0.833333 11 0.909091 0.118040 0.985366 76.800000 trnG-UCC_part1 tRNA trnG-UCC trnG-UCC 8749 8771 1 23 LSC 0.000000 0 0 0 6 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 trnG-UCC_part2 tRNA trnG-UCC trnG-UCC 9668 9715 1 48 LSC 0.000000 0 0 33 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_010 igs trnG-UCC|trnR-UCU trnG-UCC-trnR-UCU 9716 9873 0 158 LSC 0.068374 31 0 81 3 no 0.833333 11 0.909091 0.068374 1.000000 69.600000 trnR-UCU tRNA trnR-UCU trnR-UCU 9874 9945 1 72 LSC 0.022727 4 0 19 13 no 0.333333 6 0.666667 0.022727 1.000000 43.100000 IGS_011 igs trnR-UCU|atpA trnR-UCU-atpA 9946 10030 0 85 LSC 0.052050 13 0 4 18 no 0.583333 9 0.777778 0.052050 1.000000 65.000000 atpA gene atpA atpA 10031 11407 -1 1377 LSC 0.018133 77 0 30 21 no 0.833333 11 0.909091 0.018133 1.000000 57.300000 IGS_012 igs atpA|atpI atpA-atpI 11408 14291 0 2884 LSC 0.035141 289 28 48 67 no 1.000000 12 1.000000 0.034292 0.997573 73.900000 atpI gene atpI atpI 14292 14735 -1 444 LSC 0.023103 28 0 14 12 no 0.666667 10 0.800000 0.023103 1.000000 53.400000 IGS_013 igs atpI|rpoC2 atpI-rpoC2 14736 16059 0 1324 LSC 0.020574 86 5 6 21 no 0.833333 11 0.909091 0.020508 1.000000 58.900000 rpoC2 gene rpoC2 rpoC2 16060 20007 -1 3948 LSC 0.030622 351 6 0 60 no 1.000000 12 1.000000 0.030614 1.000000 64.200000 IGS_014 igs rpoC2|rpoC1 rpoC2-rpoC1 20008 20470 0 463 LSC 0.022089 29 0 26 23 no 0.833333 11 0.909091 0.022089 1.000000 57.300000 rpoC1 gene rpoC1 rpoC1 20471 22971 -1 2501 LSC 0.022354 160 6 0 36 no 1.000000 12 1.000000 0.022281 0.999200 60.000000 IGS_015 igs rpoC1|trnD-GUC rpoC1-trnD-GUC 22972 27389 0 4418 LSC 0.028799 372 24 11 84 yes 1.000000 12 1.000000 0.028573 0.997963 63.300000 trnD-GUC tRNA trnD-GUC trnD-GUC 27390 27463 1 74 LSC 0.000000 0 0 1 10 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_016 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 27464 27520 0 57 LSC 0.045189 9 0 75 84 no 0.416667 8 0.625000 0.045189 1.000000 65.000000 trnY-GUA tRNA trnY-GUA trnY-GUA 27521 27602 -1 82 LSC 0.000000 0 0 0 2 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_017 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 27603 27762 0 160 LSC 0.042140 19 0 82 84 no 0.583333 9 0.777778 0.042140 1.000000 67.300000 trnE-UUC tRNA trnE-UUC trnE-UUC 27763 27835 -1 73 LSC 0.000000 0 0 9 11 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_018 igs trnE-UUC|petN trnE-UUC-petN 27836 29160 0 1325 LSC 0.062266 224 59 82 42 yes 1.000000 12 1.000000 0.062897 0.995472 87.000000 petN gene petN petN 29161 29355 -1 195 LSC 0.022533 11 0 0 5 no 0.333333 8 0.500000 0.022533 1.000000 42.200000 IGS_019 igs petN|trnC-GCA petN-trnC-GCA 29356 29845 0 490 LSC 0.054372 78 23 31 26 yes 1.000000 12 1.000000 0.053064 0.997959 84.000000 trnC-GCA tRNA trnC-GCA trnC-GCA 29846 29917 -1 72 LSC 0.006524 2 0 1 14 no 0.083333 3 0.333333 0.006524 1.000000 26.800000 IGS_020 igs trnC-GCA|trnG-GCC trnC-GCA-trnG-GCC 29918 30358 0 441 LSC 0.065404 82 20 45 73 yes 0.833333 11 0.909091 0.066259 0.997732 80.800000 trnG-GCC tRNA trnG-GCC trnG-GCC 30359 30429 -1 71 LSC 0.002347 1 0 8 2 no 0.083333 2 0.500000 0.002347 1.000000 23.300000 IGS_021 igs trnG-GCC|psbZ trnG-GCC-psbZ 30430 30608 0 179 LSC 0.050787 29 0 79 15 no 0.666667 10 0.800000 0.050787 1.000000 67.400000 psbZ gene psbZ psbZ 30609 30797 -1 189 LSC 0.024691 10 0 1 67 no 0.166667 6 0.333333 0.024691 1.000000 39.700000 IGS_022 igs psbZ|trnS-UGA psbZ-trnS-UGA 30798 31209 0 412 LSC 0.039092 44 0 1 99 no 0.833333 11 0.909091 0.039092 1.000000 66.900000 trnS-UGA tRNA trnS-UGA trnS-UGA 31210 31298 1 89 LSC 0.003745 2 0 7 10 no 0.166667 3 0.666667 0.003745 1.000000 26.900000 IGS_023 igs trnS-UGA|psbD trnS-UGA-psbD 31299 32897 0 1599 LSC 0.021151 98 8 96 81 no 1.000000 12 1.000000 0.021098 0.997498 67.300000 psbD gene psbD psbD 32898 33959 -1 1062 LSC 0.014524 52 0 45 1 no 0.666667 10 0.800000 0.014524 1.000000 50.200000 IGS_024 igs psbD|trnT-GGU psbD-trnT-GGU 33960 35171 0 1212 LSC 0.057179 200 55 1 53 yes 1.000000 12 1.000000 0.057830 0.990099 83.800000 trnT-GGU tRNA trnT-GGU trnT-GGU 35172 35243 -1 72 LSC 0.013258 3 0 3 8 no 0.083333 4 0.250000 0.013258 1.000000 31.700000 IGS_025 igs trnT-GGU|trnfM-CAU trnT-GGU-trnfM-CAU 35244 35730 0 487 LSC 0.057651 76 7 4 73 no 0.833333 11 0.909091 0.057733 0.991786 75.000000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 35731 35803 -1 73 LSC 0.002283 1 0 5 0 no 0.083333 2 0.500000 0.002283 1.000000 23.100000 IGS_026 igs trnfM-CAU|rps14 trnfM-CAU-rps14 35804 35928 0 125 LSC 0.043636 15 0 78 9 no 0.666667 10 0.800000 0.043636 1.000000 64.100000 rps14 gene rps14 rps14 35929 35976 -1 48 LSC 0.037563 5 0 2 27 no 0.250000 6 0.500000 0.037563 1.000000 53.000000 IGS_027 igs rps14|psaA rps14-psaA 35977 38678 0 2702 LSC 0.021708 185 1 20 45 no 1.000000 12 1.000000 0.021622 1.000000 61.100000 psaA gene psaA psaA 38679 40931 -1 2253 LSC 0.013820 96 0 126 53 no 0.833333 11 0.909091 0.013820 1.000000 54.600000 IGS_028 igs psaA|trnS-GGA psaA-trnS-GGA 40932 43414 0 2483 LSC 0.025587 186 34 7 2 no 1.000000 12 1.000000 0.025642 0.993959 64.200000 trnS-GGA tRNA trnS-GGA trnS-GGA 43415 43501 1 87 LSC 0.031522 7 0 16 41 no 0.166667 6 0.333333 0.031522 1.000000 47.300000 IGS_029 igs trnS-GGA|trnL-UAA trnS-GGA-trnL-UAA 43502 46162 0 2661 LSC 0.031229 241 119 26 49 no 1.000000 12 1.000000 0.030411 0.982337 73.500000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 46163 46196 1 34 LSC 0.000000 0 0 31 15 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 46909 46959 1 51 LSC 0.016637 2 0 35 23 no 0.000000 3 0.000000 0.016637 1.000000 32.900000 IGS_032 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 46960 47291 0 332 LSC 0.027602 28 6 1 80 no 0.833333 11 0.909091 0.027662 0.996988 60.200000 trnF-GAA tRNA trnF-GAA trnF-GAA 47292 47364 1 73 LSC 0.000000 0 0 0 7 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_033 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 47365 47610 0 246 LSC 0.057328 41 4 73 24 no 1.000000 12 1.000000 0.057589 0.991870 76.000000 ndhJ gene ndhJ ndhJ 47611 48123 -1 513 LSC 0.017573 27 0 13 17 no 0.833333 11 0.909091 0.017573 1.000000 54.300000 IGS_034 igs ndhJ|ndhK ndhJ-ndhK 48124 48198 0 75 LSC 0.030505 9 0 10 23 no 0.333333 7 0.571429 0.030505 1.000000 52.000000 ndhK gene ndhK ndhK 48199 48930 -1 732 LSC 0.019374 43 0 1 11 no 0.666667 10 0.800000 0.019374 1.000000 53.600000 ndhC gene ndhC ndhC 48867 49283 -1 417 LSC 0.024635 28 0 29 11 no 0.833333 11 0.909091 0.024635 1.000000 57.100000 IGS_036 igs ndhC|trnM-CAU ndhC-trnM-CAU 49284 50486 0 1203 LSC 0.056067 190 65 29 8 yes 1.000000 12 1.000000 0.055241 0.986700 84.900000 trnM-CAU tRNA trnM-CAU trnM-CAU 50487 50559 1 73 LSC 0.004151 1 0 14 23 no 0.000000 2 0.000000 0.004151 1.000000 23.400000 IGS_037 igs trnM-CAU|atpE trnM-CAU-atpE 50560 50745 0 186 LSC 0.055067 29 0 64 21 no 0.666667 10 0.800000 0.055067 1.000000 67.800000 atpE gene atpE atpE 50746 51144 -1 399 LSC 0.016101 19 0 0 8 no 0.666667 10 0.800000 0.016101 1.000000 46.500000 IGS_038 igs atpE|atpB atpE-atpB 51145 51149 0 5 LSC 0.000000 0 0 79 3 no 0.000000 1 0.000000 NA 1.000000 19.000000 atpB gene atpB atpB 51150 52655 -1 1506 LSC 0.019800 81 0 84 2 no 0.833333 11 0.909091 0.019800 1.000000 56.400000 IGS_039 igs atpB|rbcL atpB-rbcL 52656 53269 0 614 LSC 0.033733 59 0 2 52 no 0.666667 10 0.800000 0.033733 1.000000 64.800000 rbcL gene rbcL rbcL 53270 54697 1 1428 LSC 0.015247 63 7 79 7 no 1.000000 12 1.000000 0.015258 1.000000 57.300000 IGS_040 igs rbcL|trnR-UCG rbcL-trnR-UCG 54698 54827 0 130 LSC 0.069231 22 0 4 1 no 0.583333 9 0.777778 0.069231 1.000000 64.800000 trnR-UCG tRNA trnR-UCG trnR-UCG 54828 54908 1 81 LSC 0.034044 8 0 0 1 no 0.250000 7 0.428571 0.034044 1.000000 51.100000 IGS_041 igs trnR-UCG|accD trnR-UCG-accD 54909 55245 0 337 LSC 0.078975 66 57 1 8 no 0.666667 10 0.800000 0.078852 0.922849 70.300000 accD gene accD accD 55246 56052 1 807 LSC 0.023244 48 0 9 11 no 0.583333 9 0.777778 0.023244 1.000000 54.500000 IGS_042 igs accD|psaI accD-psaI 56053 56554 0 502 LSC 0.033884 47 15 25 73 no 0.833333 11 0.909091 0.032688 0.998008 70.900000 psaI gene psaI psaI 56555 56665 1 111 LSC 0.007644 2 0 35 6 no 0.000000 3 0.000000 0.007644 1.000000 24.900000 IGS_043 igs psaI|ycf4 psaI-ycf4 56666 57053 0 388 LSC 0.043072 46 0 29 8 no 0.666667 10 0.800000 0.043072 1.000000 65.600000 ycf4 gene ycf4 ycf4 57054 57635 1 582 LSC 0.029236 46 0 23 3 no 0.833333 11 0.909091 0.029236 1.000000 63.500000 IGS_044 igs ycf4|cemA ycf4-cemA 57636 57799 0 164 LSC 0.062885 28 3 4 39 no 0.833333 11 0.909091 0.062633 0.987805 71.600000 cemA gene cemA cemA 57800 59317 1 1518 LSC 0.028337 128 3 16 6 no 0.833333 11 0.909091 0.028326 1.000000 64.600000 IGS_045 igs cemA|psbJ cemA-psbJ 59318 61282 0 1965 LSC 0.034991 195 25 36 33 no 1.000000 12 1.000000 0.035200 0.996947 74.900000 psbJ gene psbJ psbJ 61283 61405 -1 123 LSC 0.031288 9 0 12 3 no 0.333333 8 0.500000 0.031288 1.000000 48.500000 IGS_046 igs psbJ|psbF psbJ-psbF 61406 61670 0 265 LSC 0.020126 19 0 27 6 no 0.833333 11 0.909091 0.020126 1.000000 52.800000 psbF gene psbF psbF 61671 61790 -1 120 LSC 0.008586 2 0 43 13 no 0.000000 3 0.000000 0.008586 1.000000 25.700000 IGS_047 igs psbF|ccsA psbF-ccsA 61791 61852 0 62 LSC 0.016373 3 0 7 6 no 0.250000 5 0.600000 0.016373 1.000000 37.300000 ccsA gene ccsA ccsA 61853 61918 -1 66 LSC 0.018825 5 0 45 19 no 0.250000 6 0.500000 0.018825 1.000000 42.800000 IGS_048 igs ccsA|petG ccsA-petG 61919 63091 0 1173 LSC 0.040362 131 51 34 30 yes 1.000000 12 1.000000 0.039686 0.993180 81.600000 petG gene petG petG 63092 63208 1 117 LSC 0.023699 6 0 52 15 no 0.166667 5 0.400000 0.023699 1.000000 40.100000 IGS_049 igs petG|trnW-CCA petG-trnW-CCA 63209 63481 0 273 LSC 0.065219 49 7 12 79 no 1.000000 12 1.000000 0.065093 0.981685 75.800000 trnW-CCA tRNA trnW-CCA trnW-CCA 63482 63555 -1 74 LSC 0.000000 0 0 19 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_050 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 63556 63716 0 161 LSC 0.077357 34 0 93 65 no 0.500000 9 0.666667 0.077357 1.000000 68.000000 trnP-UGG tRNA trnP-UGG trnP-UGG 63717 63790 -1 74 LSC 0.008804 2 0 15 22 no 0.083333 3 0.333333 0.008804 1.000000 28.800000 IGS_051 igs trnP-UGG|psaJ trnP-UGG-psaJ 63791 64147 0 357 LSC 0.073958 76 11 8 23 no 0.833333 11 0.909091 0.074552 1.000000 74.700000 psaJ gene psaJ psaJ 64148 64276 1 129 LSC 0.030303 10 0 14 3 no 0.250000 6 0.500000 0.030303 1.000000 47.000000 IGS_052 igs psaJ|rpl33 psaJ-rpl33 64277 64505 0 229 LSC 0.064009 37 2 17 20 no 0.833333 11 0.909091 0.062870 1.000000 71.700000 rpl33 gene rpl33 rpl33 64506 64706 1 201 LSC 0.051259 30 0 12 0 no 0.833333 11 0.909091 0.051259 1.000000 69.400000 IGS_053 igs rpl33|rpl20 rpl33-rpl20 64707 65259 0 553 LSC 0.046410 68 27 9 23 yes 0.833333 11 0.909091 0.046764 1.000000 79.300000 rpl20 gene rpl20 rpl20 65260 65616 -1 357 LSC 0.021857 27 0 38 30 no 0.833333 11 0.909091 0.021857 1.000000 57.100000 IGS_054 igs rpl20|rps12 rpl20-rps12 65617 66594 0 978 LSC 0.040569 123 2 43 9 no 1.000000 12 1.000000 0.040594 0.998978 75.400000 rps12_part1 gene rps12 rps12 66595 66708 -1 114 LSC 0.010633 5 0 21 12 no 0.250000 6 0.500000 0.010633 1.000000 34.600000 IGS_055 igs rps12|clpP rps12-clpP 66709 66971 0 263 LSC 0.052713 41 8 32 38 no 0.583333 9 0.777778 0.052807 0.977186 70.200000 clpP gene clpP clpP 66972 68902 -1 1931 LSC 0.033511 186 30 5 8 no 1.000000 12 1.000000 0.033006 0.991196 71.900000 IGS_056 igs clpP|psbB clpP-psbB 68903 70117 0 1215 LSC 0.023796 85 19 83 50 no 0.833333 11 0.909091 0.023503 0.988477 65.400000 psbB gene psbB psbB 70118 70972 1 855 LSC 0.021974 61 0 12 18 no 0.833333 11 0.909091 0.021974 1.000000 60.300000 IGS_057 igs psbB|psbN psbB-psbN 70973 71469 0 497 LSC 0.037612 58 21 0 52 no 1.000000 12 1.000000 0.037858 0.991952 75.900000 psbN gene psbN psbN 71470 71601 -1 132 LSC 0.011019 6 0 22 13 no 0.416667 7 0.714286 0.011019 1.000000 38.200000 IGS_058 igs psbN|psbH psbN-psbH 71602 71753 0 152 LSC 0.029007 13 0 31 7 no 0.333333 7 0.571429 0.029007 1.000000 49.300000 psbH gene psbH psbH 71754 71918 1 165 LSC 0.014509 10 0 32 7 no 0.416667 7 0.714286 0.014509 1.000000 41.200000 IGS_059 igs psbH|petB psbH-petB 71919 72055 0 137 LSC 0.068569 26 10 12 19 no 1.000000 12 1.000000 0.064976 0.956204 78.300000 petB gene petB petB 72056 73506 1 1451 LSC 0.035480 142 23 6 3 no 1.000000 12 1.000000 0.035534 0.987595 73.700000 IGS_060 igs petB|petD petB-petD 73507 73711 0 205 LSC 0.052476 30 6 1 16 no 0.583333 9 0.777778 0.052750 1.000000 68.300000 petD gene petD petD 73712 74826 1 1115 LSC 0.028278 90 4 11 0 no 1.000000 12 1.000000 0.028305 1.000000 67.000000 IGS_061 igs petD|rps8 petD-rps8 74827 77216 0 2390 LSC 0.031588 213 24 13 32 no 0.833333 11 0.909091 0.031536 0.999582 66.300000 rps8 gene rps8 rps8 77217 77615 -1 399 LSC 0.038202 47 0 10 4 no 0.833333 11 0.909091 0.038202 1.000000 66.400000 IGS_062 igs rps8|rpl14 rps8-rpl14 77616 77791 0 176 LSC 0.047968 23 6 1 6 no 0.666667 10 0.800000 0.048478 0.994318 69.300000 rpl14 gene rpl14 rpl14 77792 78127 -1 336 LSC 0.033009 31 0 7 0 no 0.833333 11 0.909091 0.033009 1.000000 61.500000 IGS_063 igs rpl14|rpl16 rpl14-rpl16 78128 78440 0 313 LSC 0.024487 24 19 54 20 no 0.583333 9 0.777778 0.022524 0.939297 56.300000 rpl16 gene rpl16 rpl16 78441 79628 -1 1188 LSC 0.035911 125 18 27 3 no 1.000000 12 1.000000 0.035881 0.986532 74.100000 IGS_064 igs rpl16|rps3 rpl16-rps3 79629 79741 0 113 LSC 0.054733 16 15 20 42 no 0.333333 8 0.500000 0.052423 1.000000 67.400000 rps3 gene rps3 rps3 79742 80425 -1 684 LSC 0.026493 55 0 2 3 no 0.833333 11 0.909091 0.026493 1.000000 62.700000 IGS_065 igs rps3|rps19 rps3-rps19 80426 80919 0 494 LSC 0.049273 67 11 83 15 no 0.833333 11 0.909091 0.048569 0.985830 76.400000 rps19 gene rps19 rps19 80920 81198 -1 279 LSC 0.021451 15 0 14 4 no 0.500000 9 0.666667 0.021451 1.000000 44.800000 IGS_066 igs rps19|trnI-CAU rps19-trnI-CAU 81199 83340 0 2142 LSC 0.046368 288 36 5 79 no 1.000000 12 1.000000 0.046103 0.990196 77.800000 trnI-CAU tRNA trnI-CAU trnI-CAU 83341 83414 -1 74 LSC 0.000000 0 0 11 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_067 igs trnI-CAU|trnT-UGU trnI-CAU-trnT-UGU 83415 84240 0 826 IRb 0.016761 44 14 85 53 no 0.750000 10 0.900000 0.015505 0.992736 59.000000 trnT-UGU_part1 tRNA trnT-UGU trnT-UGU 84241 84274 1 34 IRb 0.000000 0 0 6 19 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 trnT-UGU_part2 tRNA trnT-UGU trnT-UGU 84763 84797 1 35 IRb 0.000000 0 0 13 69 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_070 igs trnT-UGU|trnR-ACG trnT-UGU-trnR-ACG 84798 85581 0 784 IRb 0.026435 55 33 48 92 no 0.833333 11 0.909091 0.026741 0.969388 69.000000 trnR-ACG tRNA trnR-ACG trnR-ACG 85582 85656 -1 75 IRb 0.000000 0 0 33 17 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_071 igs trnR-ACG|rrn5S trnR-ACG-rrn5S 85657 85905 0 249 IRb 0.019875 17 8 108 146 no 0.750000 10 0.900000 0.020157 0.979920 61.600000 rrn5S rRNA rrn5S rrn5S 85906 86028 -1 123 IRb 0.004065 3 0 10 23 no 0.166667 3 0.666667 0.004065 1.000000 27.500000 IGS_072 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 86029 86292 0 264 IRb 0.019800 15 0 133 158 no 0.500000 9 0.666667 0.019800 1.000000 54.100000 rrn4.5S rRNA rrn4.5S rrn4.5S 86293 86395 -1 103 IRb 0.000000 0 0 24 55 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_073 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 86396 86518 0 123 IRb 0.016425 6 4 127 300 no 0.333333 7 0.571429 0.016425 0.967480 50.700000 rrn23S rRNA rrn23S rrn23S 86519 89336 -1 2818 IRb 0.001199 12 0 36 15 no 0.416667 8 0.625000 0.001199 1.000000 32.300000 IGS_074 igs rrn23S|trnA-UGC rrn23S-trnA-UGC 89337 89538 0 202 IRb 0.017342 11 12 130 26 no 0.416667 8 0.625000 0.017283 1.000000 49.100000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 89539 89574 -1 36 IRb 0.008418 1 0 71 11 no 0.000000 2 0.000000 0.008418 1.000000 26.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 90374 90410 -1 37 IRb 0.000000 0 0 34 57 no 0.000000 1 0.000000 0.000000 1.000000 21.300000 IGS_077 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 90411 90491 0 81 IRb 0.015526 3 0 71 48 no 0.083333 3 0.333333 0.015526 1.000000 35.500000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 90492 90527 -1 36 IRb 0.000000 0 0 1 12 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 91550 91585 -1 36 IRb 0.000000 0 0 51 15 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_080 igs trnI-GAU|rrn16S trnI-GAU-rrn16S 91586 91893 0 308 IRb 0.068005 48 15 87 74 yes 0.833333 11 0.909091 0.059509 0.974026 80.300000 rrn16S rRNA rrn16S rrn16S 91894 93392 -1 1499 IRb 0.002203 10 0 13 40 no 0.583333 9 0.777778 0.002203 1.000000 38.700000 IGS_081 igs rrn16S|rps12 rrn16S-rps12 93393 95728 0 2336 IRb 0.016389 108 68 5 89 no 1.000000 12 1.000000 0.016365 0.994863 58.900000 rps12_part2 gene rps12 rps12 95729 96584 1 856 IRb 0.008884 19 17 8 87 no 0.666667 10 0.800000 0.008970 0.994159 47.000000 IGS_082 igs rps12|psbA rps12-psbA 96585 97665 0 1081 IRb 0.015936 52 3 133 3 no 0.833333 11 0.909091 0.015971 0.998150 54.300000 psbA gene psbA psbA 97666 98727 1 1062 IRb 0.003709 13 0 17 78 no 0.583333 9 0.777778 0.003709 1.000000 40.400000 IGS_083 igs psbA|trnH-GUG psbA-trnH-GUG 98728 99151 0 424 IRb 0.015187 21 0 123 97 no 0.583333 9 0.777778 0.015187 1.000000 52.600000 trnH-GUG tRNA trnH-GUG trnH-GUG 99152 99225 1 74 IRb 0.000000 0 0 24 23 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 IGS_084 igs trnH-GUG|trnN-GUU trnH-GUG-trnN-GUU 99226 106482 0 7257 IRb 0.014548 316 86 98 92 no 1.000000 12 1.000000 0.014568 0.997520 57.700000 trnN-GUU tRNA trnN-GUU trnN-GUU 106483 106554 -1 72 IRb 0.002315 1 0 45 20 no 0.083333 2 0.500000 0.002315 1.000000 24.600000 IGS_085 igs trnN-GUU|rpl21 trnN-GUU-rpl21 106555 109552 0 2998 SSC 0.044844 390 57 117 14 yes 1.000000 12 1.000000 0.044920 0.993996 76.500000 rpl21 gene rpl21 rpl21 109553 109909 1 357 SSC 0.044343 43 6 2 8 no 0.666667 10 0.800000 0.044281 1.000000 67.100000 IGS_086 igs rpl21|rpl32 rpl21-rpl32 109910 110032 0 123 SSC 0.081794 27 0 3 35 no 0.666667 10 0.800000 0.081794 1.000000 66.500000 rpl32 gene rpl32 rpl32 110033 110212 1 180 SSC 0.044024 23 0 4 6 no 0.333333 7 0.571429 0.044024 1.000000 57.600000 IGS_087 igs rpl32|trnP-GGG rpl32-trnP-GGG 110213 110640 0 428 SSC 0.111043 122 51 1 75 yes 1.000000 12 1.000000 0.108380 0.918224 78.200000 trnP-GGG tRNA trnP-GGG trnP-GGG 110641 110714 -1 74 SSC 0.009009 4 0 3 1 no 0.333333 5 0.800000 0.009009 1.000000 35.900000 IGS_088 igs trnP-GGG|trnL-UAG trnP-GGG-trnL-UAG 110715 110973 0 259 SSC 0.115365 81 18 77 13 no 0.833333 11 0.909091 0.114821 0.976834 75.500000 trnL-UAG tRNA trnL-UAG trnL-UAG 110974 111052 1 79 SSC 0.014193 3 0 1 11 no 0.083333 4 0.250000 0.014193 1.000000 31.500000 IGS_089 igs trnL-UAG|ccsA trnL-UAG-ccsA 111053 111265 0 213 SSC 0.119775 64 7 62 1 no 0.833333 11 0.909091 0.116366 0.971831 72.700000 ccsA gene ccsA ccsA 111266 112204 1 939 SSC 0.037677 100 0 39 2 no 1.000000 12 1.000000 0.037677 1.000000 73.400000 IGS_090 igs ccsA|ndhD ccsA-ndhD 112205 112608 0 404 SSC 0.086266 99 29 30 5 yes 1.000000 12 1.000000 0.086048 0.955446 79.700000 ndhD gene ndhD ndhD 112609 114117 -1 1509 SSC 0.028174 138 0 36 5 no 1.000000 12 1.000000 0.028174 1.000000 68.200000 IGS_091 igs ndhD|psaC ndhD-psaC 114118 114256 0 139 SSC 0.051559 20 4 14 45 no 0.666667 10 0.800000 0.050397 1.000000 70.700000 psaC gene psaC psaC 114257 114502 -1 246 SSC 0.015090 12 0 11 22 no 0.500000 8 0.750000 0.015090 1.000000 41.800000 IGS_092 igs psaC|ndhE psaC-ndhE 114503 114847 0 345 SSC 0.069917 74 6 56 51 yes 1.000000 12 1.000000 0.070368 0.997101 79.300000 ndhE gene ndhE ndhE 114848 115150 -1 303 SSC 0.018402 20 0 13 7 no 0.666667 10 0.800000 0.018402 1.000000 48.400000 IGS_093 igs ndhE|ndhA ndhE-ndhA 115151 116659 0 1509 SSC 0.038657 161 7 15 9 no 0.833333 11 0.909091 0.038760 1.000000 71.700000 ndhA gene ndhA ndhA 116660 118707 -1 2048 SSC 0.038350 216 7 5 7 no 0.833333 11 0.909091 0.038355 0.997070 69.900000 IGS_094 igs ndhA|ndhH ndhA-ndhH 118708 118708 0 1 SSC 0.000000 0 0 32 6 no 0.000000 1 0.000000 NA 1.000000 19.200000 ndhH gene ndhH ndhH 118709 119887 -1 1179 SSC 0.025368 81 0 33 21 no 0.833333 11 0.909091 0.025368 1.000000 62.200000 IGS_095 igs ndhH|rps15 ndhH-rps15 119888 119996 0 109 SSC 0.036419 12 0 9 1 no 0.500000 9 0.666667 0.036419 1.000000 57.100000 rps15 gene rps15 rps15 119997 120266 -1 270 SSC 0.038608 29 0 7 1 no 0.833333 11 0.909091 0.038608 1.000000 64.300000 IGS_096 igs rps15|ycf1 rps15-ycf1 120267 120591 0 325 SSC 0.081538 68 13 1 13 no 0.666667 10 0.800000 0.083902 0.963077 70.600000 ycf1 gene ycf1 ycf1 120592 124530 -1 3939 SSC 0.044846 526 27 9 0 yes 1.000000 12 1.000000 0.044784 1.000000 72.700000 IGS_097 igs ycf1|chlN ycf1-chlN 124531 126071 0 1541 SSC 0.059810 259 0 42 3 yes 1.000000 12 1.000000 0.059810 1.000000 78.900000 chlN gene chlN chlN 126072 127457 -1 1386 SSC 0.036031 141 0 6 58 no 1.000000 12 1.000000 0.036031 1.000000 72.900000 IGS_098 igs chlN|trnN-GUU chlN-trnN-GUU 127458 128880 0 1423 SSC 0.026166 102 9 10 117 no 1.000000 12 1.000000 0.026243 0.996486 65.900000 trnN-GUU tRNA trnN-GUU trnN-GUU 128881 128952 1 72 IRa 0.002315 1 0 20 45 no 0.083333 2 0.500000 0.002315 1.000000 24.600000 IGS_099 igs trnN-GUU|trnH-GUG trnN-GUU-trnH-GUG 128953 136209 0 7257 IRa 0.014632 318 87 92 98 no 1.000000 12 1.000000 0.014643 0.997520 57.800000 trnH-GUG tRNA trnH-GUG trnH-GUG 136210 136283 -1 74 IRa 0.000000 0 0 23 24 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 IGS_100 igs trnH-GUG|psbA trnH-GUG-psbA 136284 136707 0 424 IRa 0.015187 21 0 97 123 no 0.583333 9 0.777778 0.015187 1.000000 52.600000 psbA gene psbA psbA 136708 137769 -1 1062 IRa 0.003709 13 0 78 17 no 0.583333 9 0.777778 0.003709 1.000000 40.400000 IGS_101 igs psbA|rps12 psbA-rps12 137770 138850 0 1081 IRa 0.016273 52 3 3 133 no 0.833333 11 0.909091 0.016308 0.998150 54.500000 rps12_part2 gene rps12 rps12 138851 139706 -1 856 IRa 0.009033 19 17 87 8 no 0.666667 10 0.800000 0.008753 0.994159 47.000000 IGS_102 igs rps12|rrn16S rps12-rrn16S 139707 142042 0 2336 IRa 0.016414 108 67 89 5 no 1.000000 12 1.000000 0.016325 0.994863 58.800000 rrn16S rRNA rrn16S rrn16S 142043 143541 1 1499 IRa 0.002203 10 0 40 13 no 0.583333 9 0.777778 0.002203 1.000000 38.700000 IGS_103 igs rrn16S|trnI-GAU rrn16S-trnI-GAU 143542 143849 0 308 IRa 0.062097 45 19 74 87 yes 0.833333 11 0.909091 0.060500 0.977273 80.500000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 143850 143885 1 36 IRa 0.000000 0 0 15 51 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 144908 144943 1 36 IRa 0.000000 0 0 12 23 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_106 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 144944 145024 0 81 IRa 0.008792 2 0 48 71 no 0.083333 3 0.333333 0.008792 1.000000 31.000000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 145025 145061 1 37 IRa 0.000000 0 0 57 34 no 0.000000 1 0.000000 0.000000 1.000000 21.300000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 145861 145896 1 36 IRa 0.008418 1 0 11 71 no 0.000000 2 0.000000 0.008418 1.000000 26.800000 IGS_109 igs trnA-UGC|rrn23S trnA-UGC-rrn23S 145897 146098 0 202 IRa 0.017507 11 10 26 130 no 0.416667 8 0.625000 0.017117 1.000000 49.200000 rrn23S rRNA rrn23S rrn23S 146099 148916 1 2818 IRa 0.001199 12 0 15 36 no 0.416667 8 0.625000 0.001199 1.000000 32.300000 IGS_110 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 148917 149039 0 123 IRa 0.016425 6 4 300 127 no 0.333333 7 0.571429 0.016425 0.967480 50.700000 rrn4.5S rRNA rrn4.5S rrn4.5S 149040 149142 1 103 IRa 0.000000 0 0 55 24 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_111 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 149143 149406 0 264 IRa 0.019800 15 0 158 133 no 0.500000 9 0.666667 0.019800 1.000000 54.100000 rrn5S rRNA rrn5S rrn5S 149407 149529 1 123 IRa 0.004065 3 0 23 10 no 0.166667 3 0.666667 0.004065 1.000000 27.500000 IGS_112 igs rrn5S|trnR-ACG rrn5S-trnR-ACG 149530 149778 0 249 IRa 0.022083 18 7 146 108 no 0.750000 10 0.900000 0.022397 0.979920 62.600000 trnR-ACG tRNA trnR-ACG trnR-ACG 149779 149853 1 75 IRa 0.000000 0 0 17 33 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_113 igs trnR-ACG|trnT-UGU trnR-ACG-trnT-UGU 149854 150637 0 784 IRa 0.025175 54 34 92 48 no 0.833333 11 0.909091 0.025142 0.969388 68.400000 trnT-UGU_part2 tRNA trnT-UGU trnT-UGU 150638 150672 -1 35 IRa 0.000000 0 0 69 13 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 trnT-UGU_part1 tRNA trnT-UGU trnT-UGU 151161 151194 -1 34 IRa 0.000000 0 0 19 6 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_116 igs trnT-UGU|matK trnT-UGU-matK 151195 1190 0 1926 LSC 0.041052 225 28 53 21 no 1.000000 12 1.000000 0.040728 0.999481 77.100000